-
1
-
-
19544383635
-
Identification and measurement of neighbor-dependent nucleotide substitution processes
-
DOI 10.1093/bioinformatics/bti376
-
Arndt PF, Hwa T. 2005. Identification and measurement of neighbor-dependent nucleotide substitution processes. Bioinformatics 21:2322-2328. (Pubitemid 40731586)
-
(2005)
Bioinformatics
, vol.21
, Issue.10
, pp. 2322-2328
-
-
Arndt, P.F.1
Hwa, T.2
-
2
-
-
71749094924
-
Transposable elements in gene regulation and in the evolution of vertebrate genomes
-
Bourque G. 2009. Transposable elements in gene regulation and in the evolution of vertebrate genomes. Curr Opin Genet Dev. 19:607-612.
-
(2009)
Curr Opin Genet Dev.
, vol.19
, pp. 607-612
-
-
Bourque, G.1
-
3
-
-
67649292737
-
Unlocking the secrets of the genome
-
Celniker SE, et al. 2009. Unlocking the secrets of the genome. Nature 459:927-930.
-
(2009)
Nature
, vol.459
, pp. 927-930
-
-
Celniker, S.E.1
-
4
-
-
65349131322
-
The transcription factor c-Myc enhances KIR gene transcription through direct binding to an upstream distal promoter element
-
Cichocki F, et al. 2009. The transcription factor c-Myc enhances KIR gene transcription through direct binding to an upstream distal promoter element. Blood 113:3245-3253.
-
(2009)
Blood
, vol.113
, pp. 3245-3253
-
-
Cichocki, F.1
-
5
-
-
77950523023
-
Analysis of the IGF2/H19 imprinting control region uncovers new genetic defects, including mutations of OCT-binding sequences, in patients with 11p15 fetal growth disorders
-
Demars J, et al. 2010. Analysis of the IGF2/H19 imprinting control region uncovers new genetic defects, including mutations of OCT-binding sequences, in patients with 11p15 fetal growth disorders. Hum Mol Genet. 19:803-814.
-
(2010)
Hum Mol Genet.
, vol.19
, pp. 803-814
-
-
Demars, J.1
-
6
-
-
0035986888
-
Evolution of transcription factor binding sites in mammalian gene regulatory regions: Conservation and turnover
-
Dermitzakis ET, Clark AG. 2002. Evolution of transcription factor binding sites in mammalian gene regulatory regions: conservation and turnover. Mol Biol Evol. 19:1114-1121. (Pubitemid 34743235)
-
(2002)
Molecular Biology and Evolution
, vol.19
, Issue.7
, pp. 1114-1121
-
-
Dermitzakis, E.T.1
Clark, A.G.2
-
7
-
-
44949198268
-
The impact of recombination on nucleotide substitutions in the human genome
-
Duret L, Arndt PF. 2008. The impact of recombination on nucleotide substitutions in the human genome. PLoS Genet. 4:e1000071.
-
(2008)
PLoS Genet.
, vol.4
-
-
Duret, L.1
Arndt, P.F.2
-
8
-
-
76549135113
-
Evolution in health and medicine Sackler colloquium: Stochastic epigenetic variation as a driving force of development, evolutionary adaptation, and disease
-
Feinberg AP, Irizarry RA. 2010. Evolution in health and medicine Sackler colloquium: stochastic epigenetic variation as a driving force of development, evolutionary adaptation, and disease. Proc Natl Acad Sci U S A. 107(Suppl 1):1757-1764.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, Issue.SUPPL. 1
, pp. 1757-1764
-
-
Feinberg, A.P.1
Irizarry, R.A.2
-
9
-
-
0029779280
-
Cdc25 cell-cycle phosphatase as a target of c-myc
-
DOI 10.1038/382511a0
-
Galaktionov K, Chen X, Beach D. 1996. Cdc25 cell-cycle phosphatase as a target of c-myc. Nature 382:511-517. (Pubitemid 26260686)
-
(1996)
Nature
, vol.382
, Issue.6591
, pp. 511-517
-
-
Galaktionov, K.1
Chen, X.2
Beach, D.3
-
10
-
-
34547620563
-
Divergent evolution of human p53 binding sites: Cell cycle versus apoptosis
-
Horvath MM, Wang X, Resnick MA, Bell DA. 2007. Divergent evolution of human p53 binding sites: cell cycle versus apoptosis. PLoS Genet. 3:e127.
-
(2007)
PLoS Genet.
, vol.3
-
-
Horvath, M.M.1
Wang, X.2
Resnick, M.A.3
Bell, D.A.4
-
11
-
-
77950833803
-
Variation in transcription factor binding among humans
-
Kasowski M, et al. 2010. Variation in transcription factor binding among humans. Science 328:232-235.
-
(2010)
Science
, vol.328
, pp. 232-235
-
-
Kasowski, M.1
-
12
-
-
46249117780
-
Genomic surveys by methylation-sensitive SNP analysis identify sequence-dependent allele-specific DNA methyla-tion
-
Kerkel K, et al. 2008. Genomic surveys by methylation-sensitive SNP analysis identify sequence-dependent allele-specific DNA methyla-tion. Nat Genet. 40:904-908.
-
(2008)
Nat Genet.
, vol.40
, pp. 904-908
-
-
Kerkel, K.1
-
13
-
-
33947201809
-
Analysis of the Vertebrate Insulator Protein CTCF-Binding Sites in the Human Genome
-
DOI 10.1016/j.cell.2006.12.048, PII S009286740700205X
-
Kim TH, et al. 2007. Analysis of the vertebrate insulator protein Ctcf-binding sites in the human genome. Cell 128:1231-1245. (Pubitemid 46427876)
-
(2007)
Cell
, vol.128
, Issue.6
, pp. 1231-1245
-
-
Kim, T.H.1
Abdullaev, Z.K.2
Smith, A.D.3
Ching, K.A.4
Loukinov, D.I.5
Green, RolandD.6
Zhang, M.Q.7
Lobanenkov, V.V.8
Ren, B.9
-
14
-
-
77954100084
-
Transposable elements have rewired the core regulatory network of human embryonic stem cells
-
Kunarso G, et al. 2010. Transposable elements have rewired the core regulatory network of human embryonic stem cells. Nat Genet. 42:631-634.
-
(2010)
Nat Genet.
, vol.42
, pp. 631-634
-
-
Kunarso, G.1
-
15
-
-
34249818182
-
Tissue-specific transcriptional regulation has diverged significantly between human and mouse
-
DOI 10.1038/ng2047, PII NG2047
-
Odom DT, et al. 2007. Tissue-specific transcriptional regulation has diverged significantly between human and mouse. Nat Genet. 39:730-732. (Pubitemid 46848594)
-
(2007)
Nature Genetics
, vol.39
, Issue.6
, pp. 730-732
-
-
Odom, D.T.1
Dowell, R.D.2
Jacobsen, E.S.3
Gordon, W.4
Danford, T.W.5
MacIsaac, K.D.6
Rolfe, P.A.7
Conboy, C.M.8
Gifford, D.K.9
Fraenkel, E.10
-
16
-
-
24744470281
-
In vivo transcriptional regulation of N-Myc target genes is controlled by E-box methylation
-
DOI 10.1073/pnas.0409097102
-
Perini G, Diolaiti D, Porro A, Della Valle G. 2005. In vivo transcriptional regulation of N-Myc target genes is controlled by E-box methylation. Proc Natl Acad Sci U S A. 102:12117-12122. (Pubitemid 41291138)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.34
, pp. 12117-12122
-
-
Perini, G.1
Diolaiti, D.2
Porro, A.3
Della Valle, G.4
-
17
-
-
0025829169
-
Association of Myn, the murine homolog of max, with c-Myc stimulates methylation-sensitive DNA binding and ras cotransformation
-
Prendergast GC, Lawe D, Ziff EB. 1991. Association of Myn, the murine homolog of max, with c-Myc stimulates methylation-sensitive DNA binding and ras cotransformation. Cell 65:395-407. (Pubitemid 121002049)
-
(1991)
Cell
, vol.65
, Issue.3
, pp. 395-407
-
-
Prendergast, G.C.1
Lawe, D.2
Ziff, E.B.3
-
18
-
-
2942558697
-
On the power of profiles for transcription factor binding site detection
-
Article7
-
Rahmann S, Muller T, Vingron M. 2003. On the power of profiles for transcription factor binding site detection. Stat Appl Genet Mol Biol. 2: Article7.
-
(2003)
Stat Appl Genet Mol Biol.
, vol.2
-
-
Rahmann, S.1
Muller, T.2
Vingron, M.3
-
19
-
-
0019318994
-
DNA methylation and gene function
-
Razin A, Riggs AD. 1980. DNA methylation and gene function. Science 210:604-610.
-
(1980)
Science
, vol.210
, pp. 604-610
-
-
Razin, A.1
Riggs, A.D.2
-
21
-
-
72949087319
-
A c-Myc regulatory subnetwork from human transposable element sequences
-
Wang J, Bowen NJ, Mariño-Ramírez L, Jordan IK. 2009. A c-Myc regulatory subnetwork from human transposable element sequences. Mol Biosyst. 5:1831-1839.
-
(2009)
Mol Biosyst.
, vol.5
, pp. 1831-1839
-
-
Wang, J.1
Bowen, N.J.2
Mariño-Ramírez, L.3
Jordan, I.K.4
-
22
-
-
34047116826
-
Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome
-
DOI 10.1038/ng1990, PII NG1990
-
Weber M, et al. 2007. Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome. Nat Genet. 39:457-466. (Pubitemid 46514772)
-
(2007)
Nature Genetics
, vol.39
, Issue.4
, pp. 457-466
-
-
Weber, M.1
Hellmann, I.2
Stadler, M.B.3
Ramos, L.4
Paabo, S.5
Rebhan, M.6
Schubeler, D.7
-
23
-
-
0030840954
-
Cytosine methylation and the ecology of intragenomic parasites
-
DOI 10.1016/S0168-9525(97)01181-5, PII S0168952597011815
-
Yoder JA, Walsh CP, Bestor TH. 1997. Cytosine methylation and the ecology of intragenomic parasites. Trends Genet. 13:335-340. (Pubitemid 27309911)
-
(1997)
Trends in Genetics
, vol.13
, Issue.8
, pp. 335-340
-
-
Yoder, J.A.1
Walsh, C.P.2
Bestor, T.H.3
-
24
-
-
33845187907
-
Global mapping of c-Myc binding sites and target gene networks in human B cells
-
DOI 10.1073/pnas.0604129103
-
Zeller KI, et al. 2006. Global mapping of c-Myc binding sites and target gene networks in human B cells. Proc Natl Acad Sci U S A. 103:17834-17839. (Pubitemid 44852246)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.47
, pp. 17834-17839
-
-
Zeller, K.I.1
Zhao, X.2
Lee, C.W.H.3
Kuo, P.C.4
Yao, F.5
Yustein, J.T.6
Hong, S.O.7
Orlov, Y.L.8
Shahab, A.9
How, C.Y.10
Fu, Y.11
Weng, Z.12
Kuznetsov, V.A.13
Sung, W.-K.14
Ruan, Y.15
Dang, C.V.16
Wei, C.-L.17
-
25
-
-
77956504685
-
Evolution of eukaryotic DNA methylation and the pursuit of safer sex
-
Zemach A, Zilberman D. 2010. Evolution of eukaryotic DNA methylation and the pursuit of safer sex. Curr Biol. 20:R780-R785.
-
(2010)
Curr Biol.
, vol.20
-
-
Zemach, A.1
Zilberman, D.2
-
26
-
-
59349083791
-
Methylation and deamination of CpGs generate p53-binding sites on a genomic scale
-
Zemojtel T, Kielbasa SM, Arndt PF, Chung HR, Vingron M. 2009. Methylation and deamination of CpGs generate p53-binding sites on a genomic scale. Trends Genet. 25:63-66.
-
(2009)
Trends Genet.
, vol.25
, pp. 63-66
-
-
Zemojtel, T.1
Kielbasa, S.M.2
Arndt, P.F.3
Chung, H.R.4
Vingron, M.5
-
27
-
-
0036852096
-
Novel PAX6 binding sites in the human genome and the role of repetitive elements in the evolution of gene regulation
-
DOI 10.1101/gr.188302
-
Zhou YH, Zheng JB, Gu X, Saunders GF, Yung WK. 2002. Novel PAX6 binding sites in the human genome and the role of repetitive elements in the evolution of gene regulation. Genome Res. 12:1716-1722. (Pubitemid 35363675)
-
(2002)
Genome Research
, vol.12
, Issue.11
, pp. 1716-1722
-
-
Zhou, Y.-H.1
Zheng, J.B.2
Gu, X.3
Saunders, G.F.4
Alfred Yung, W.-K.5
|