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Volumn 21, Issue 10, 2005, Pages 2322-2328

Identification and measurement of neighbor-dependent nucleotide substitution processes

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CPG ISLAND; DEAMINATION; DROSOPHILA; GENETIC MODEL; HUMAN; METHYLATION; NONHUMAN; NUCLEIC ACID BASE SUBSTITUTION; NUCLEOTIDE REPEAT; PRIORITY JOURNAL; PROCESS MODEL; STATISTICAL MODEL; VERTEBRATE; ZEBRA FISH;

EID: 19544383635     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bti376     Document Type: Article
Times cited : (65)

References (17)
  • 2
    • 0242666279 scopus 로고    scopus 로고
    • Distinct changes of genomic biases in nucleotide substitution at the time of mammalian radiation
    • Arndt,P.F. et al. (2003) Distinct changes of genomic biases in nucleotide substitution at the time of mammalian radiation. Mol. Biol. Evol., 20, 1887-1896.
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 1887-1896
    • Arndt, P.F.1
  • 3
    • 0002693749 scopus 로고
    • A comparison of several current optimization methods and use of transformations in constrained problems
    • Box,M.J. (1966) A comparison of several current optimization methods and use of transformations in constrained problems. Computer Journal 9, 67-77.
    • (1966) Computer Journal , vol.9 , pp. 67-77
    • Box, M.J.1
  • 4
    • 0018185292 scopus 로고
    • Molecular basis of base substitution hotspots in Escherichia coli
    • Coulondre,C. et al. (1978) Molecular basis of base substitution hotspots in Escherichia coli. Nature, 274, 775-780.
    • (1978) Nature , vol.274 , pp. 775-780
    • Coulondre, C.1
  • 5
    • 0031196856 scopus 로고    scopus 로고
    • Far-UV-induced dimeric, photoproducts in short oligonucleotides: Sequence effects
    • Douki,T. et al. (1997) Far-UV-induced dimeric, photoproducts in short oligonucleotides: sequence effects. Photochem. Photobiol., 66, 171-179.
    • (1997) Photochem. Photobiol. , vol.66 , pp. 171-179
    • Douki, T.1
  • 7
    • 0034284437 scopus 로고    scopus 로고
    • Repbase update: A database and an electronic journal of repetitive elements
    • Jurka,J. (2000) Repbase update: a database and an electronic journal of repetitive elements. Trends Genet., 16, 418-420.
    • (2000) Trends Genet. , vol.16 , pp. 418-420
    • Jurka, J.1
  • 8
    • 0029060923 scopus 로고
    • Dinucleotide relative abundance extremes: A genomic signature
    • Karlin,S. and Burge,C. (1995) Dinucleotide relative abundance extremes: a genomic signature. Trends Genet., 11, 283-290.
    • (1995) Trends Genet. , vol.11 , pp. 283-290
    • Karlin, S.1    Burge, C.2
  • 9
    • 0030923586 scopus 로고    scopus 로고
    • Compositional differences within and between eukaryotic genomes
    • Karlin,S. and Mrázek,J. (1997) Compositional differences within and between eukaryotic genomes. Proc. Natl Acad. Sci. USA, 94, 10227-10232.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 10227-10232
    • Karlin, S.1    Mrázek, J.2
  • 10
    • 1842332701 scopus 로고    scopus 로고
    • Compositional biases of bacterial genomes and evolutionary implications
    • Karlin,S. et al. (1997) Compositional biases of bacterial genomes and evolutionary implications. J. Bacteriol., 179, 3899-3913.
    • (1997) J. Bacteriol. , vol.179 , pp. 3899-3913
    • Karlin, S.1
  • 11
    • 0032416149 scopus 로고    scopus 로고
    • Models of molecular evolution and phylogery
    • Lio,P. and Goldman,N. (1998) Models of molecular evolution and phylogery. Genome Res., 8, 1233-1244.
    • (1998) Genome Res. , vol.8 , pp. 1233-1244
    • Lio, P.1    Goldman, N.2
  • 12
    • 13244276706 scopus 로고    scopus 로고
    • A nucleotide substitution model with nearest-neighbour interactions
    • Lunter,G. and Hein,J. (2004) A nucleotide substitution model with nearest-neighbour interactions. Bioinformatics, 20 (Suppl 1), 1216-1223.
    • (2004) Bioinformatics , vol.20 , Issue.SUPPL. 1 , pp. 1216-1223
    • Lunter, G.1    Hein, J.2
  • 14
    • 0019318994 scopus 로고
    • DNA methylation and gene function
    • Razin,A. and Riggs,A.D. (1980) DNA methylation and gene function. Science, 210, 604-610.
    • (1980) Science , vol.210 , pp. 604-610
    • Razin, A.1    Riggs, A.D.2
  • 15
    • 0017182081 scopus 로고
    • Doublet frequency analysis of fractionated vertebrate nuclear DNA
    • Russell,G.J. et al. (1976) Doublet frequency analysis of fractionated vertebrate nuclear DNA. J. Mol. Biol., 108, 1-23.
    • (1976) J. Mol. Biol. , vol.108 , pp. 1-23
    • Russell, G.J.1
  • 16
    • 0017334283 scopus 로고
    • Similarity of the general designs of protochordates and invertebrates
    • Russell,G.J. and Subak-Sharpe,J.H. (1977). Similarity of the general designs of protochordates and invertebrates. Nature, 266, 533-536.
    • (1977) Nature , vol.266 , pp. 533-536
    • Russell, G.J.1    Subak-Sharpe, J.H.2
  • 17
    • 1542510106 scopus 로고    scopus 로고
    • Phylogenetic estimation of context-dependent substitution rates by maximum likelihood
    • Siepel,A. and Haussler,D. (2004). Phylogenetic estimation of context-dependent substitution rates by maximum likelihood. Mol. Biol. Evol., 21, 468-488.
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 468-488
    • Siepel, A.1    Haussler, D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.