메뉴 건너뛰기




Volumn 11, Issue , 2012, Pages

Comparative genomics and transcriptional profiles of Saccharopolyspora erythraea NRRL 2338 and a classically improved erythromycin over-producing strain

Author keywords

Antibiotic fermentation; Comparative genomics; Saccharopolyspora erythraea; Secondary metabolism; Strain improvement

Indexed keywords

AMIDASE; AMINOPEPTIDASE; CARBON; CYTOCHROME P450; CYTOSINE DEAMINASE; ERYTHROMYCIN; ESTERASE; GLYCOSYLTRANSFERASE; NITROGEN; PHOSPHOLIPASE D; TRANSCRIPTION ELONGATION FACTOR; TRANSCRIPTION ELONGATION FACTOR EFP; TRANSLATION TERMINATION FACTOR; TRANSLATION TERMINATION FACTOR NUSB; UNCLASSIFIED DRUG; ANTIINFECTIVE AGENT; BACTERIAL PROTEIN;

EID: 84857950749     PISSN: None     EISSN: 14752859     Source Type: Journal    
DOI: 10.1186/1475-2859-11-32     Document Type: Article
Times cited : (37)

References (65)
  • 2
    • 33644942482 scopus 로고    scopus 로고
    • Genetic improvement of processes yielding microbial products
    • 10.1111/j.1574-6976.2005.00009.x, 16472304
    • Adrio JL, Demain AL. Genetic improvement of processes yielding microbial products. FEMS Microbiol Rev 2006, 30(2):187-214. 10.1111/j.1574-6976.2005.00009.x, 16472304.
    • (2006) FEMS Microbiol Rev , vol.30 , Issue.2 , pp. 187-214
    • Adrio, J.L.1    Demain, A.L.2
  • 3
    • 0035149952 scopus 로고    scopus 로고
    • Genetic methods and strategies for secondary metabolite yield improvement in actinomycetes
    • Baltz RH. Genetic methods and strategies for secondary metabolite yield improvement in actinomycetes. Antonie Van Leeuwenhoek 2001, 79(3-4):251-259.
    • (2001) Antonie Van Leeuwenhoek , vol.79 , Issue.3-4 , pp. 251-259
    • Baltz, R.H.1
  • 4
    • 0004060268 scopus 로고    scopus 로고
    • Washington, DC: American Society for Microbiology, Demain AL, Davies JE, Atlas RM, Cohen G, Hershberger CL, Hu W-S, Sherman DH, Willson RC, Wu JHD, 2
    • Vinci VA, Byng G. Manual of Industrial Microbiology and Biotechnology 1999, 103-113. Washington, DC: American Society for Microbiology, Demain AL, Davies JE, Atlas RM, Cohen G, Hershberger CL, Hu W-S, Sherman DH, Willson RC, Wu JHD, 2.
    • (1999) Manual of Industrial Microbiology and Biotechnology , pp. 103-113
    • Vinci, V.A.1    Byng, G.2
  • 5
    • 0007658020 scopus 로고    scopus 로고
    • Sequence to array: probing the genome's secrets
    • 10.1038/nbt1296-1649, 9634840
    • Blanchard AP, Hood L. Sequence to array: probing the genome's secrets. Nat Biotechnol 1996, 14(13):1649. 10.1038/nbt1296-1649, 9634840.
    • (1996) Nat Biotechnol , vol.14 , Issue.13 , pp. 1649
    • Blanchard, A.P.1    Hood, L.2
  • 6
    • 3242726864 scopus 로고    scopus 로고
    • Impact of 'ome' analyses on inverse metabolic engineering
    • 10.1016/j.ymben.2003.11.005, 15256210
    • Bro C, Nielsen J. Impact of 'ome' analyses on inverse metabolic engineering. Metab Eng 2004, 6(3):204-211. 10.1016/j.ymben.2003.11.005, 15256210.
    • (2004) Metab Eng , vol.6 , Issue.3 , pp. 204-211
    • Bro, C.1    Nielsen, J.2
  • 7
    • 0029805706 scopus 로고    scopus 로고
    • The new genomics: global views of biology
    • 10.1126/science.274.5287.536, 8928008
    • Lander ES. The new genomics: global views of biology. Science 1996, 274(5287):536-539. 10.1126/science.274.5287.536, 8928008.
    • (1996) Science , vol.274 , Issue.5287 , pp. 536-539
    • Lander, E.S.1
  • 8
    • 84984932880 scopus 로고    scopus 로고
    • Array of hope
    • Lander ES. Array of hope. Nat Genet 1999, 21(1 Suppl):3-4.
    • (1999) Nat Genet , vol.21 , Issue.1 SUPPL , pp. 3-4
    • Lander, E.S.1
  • 9
    • 20644467467 scopus 로고    scopus 로고
    • Systems biotechnology for strain improvement
    • 10.1016/j.tibtech.2005.05.003, 15923052
    • Lee SY, Lee DY, Kim TY. Systems biotechnology for strain improvement. Trends Biotechnol 2005, 23(7):349-358. 10.1016/j.tibtech.2005.05.003, 15923052.
    • (2005) Trends Biotechnol , vol.23 , Issue.7 , pp. 349-358
    • Lee, S.Y.1    Lee, D.Y.2    Kim, T.Y.3
  • 10
    • 0034992791 scopus 로고    scopus 로고
    • Metabolic engineering as an integrating platform for strain development
    • 10.1016/S1369-5274(00)00214-9, 11378489
    • Stafford DE, Stephanopoulos G. Metabolic engineering as an integrating platform for strain development. Curr Opin Microbiol 2001, 4(3):336-340. 10.1016/S1369-5274(00)00214-9, 11378489.
    • (2001) Curr Opin Microbiol , vol.4 , Issue.3 , pp. 336-340
    • Stafford, D.E.1    Stephanopoulos, G.2
  • 11
    • 20944448468 scopus 로고    scopus 로고
    • Microbial metabolomics: replacing trial-and-error by the unbiased selection and ranking of targets
    • 10.1007/s10295-005-0231-4, 15895265
    • van der Werf MJ, Jellema RH, Hankemeier T. Microbial metabolomics: replacing trial-and-error by the unbiased selection and ranking of targets. J Ind Microbiol Biotechnol 2005, 32(6):234-252. 10.1007/s10295-005-0231-4, 15895265.
    • (2005) J Ind Microbiol Biotechnol , vol.32 , Issue.6 , pp. 234-252
    • van der Werf, M.J.1    Jellema, R.H.2    Hankemeier, T.3
  • 12
    • 34848911303 scopus 로고    scopus 로고
    • Polyketide synthases and nonribosomal peptide synthetases: the emerging view from bacterial genomics
    • 10.1039/b514050c, 17898898
    • Donadio S, Monciardini P, Sosio M. Polyketide synthases and nonribosomal peptide synthetases: the emerging view from bacterial genomics. Nat Prod Rep 2007, 24(5):1073-1109. 10.1039/b514050c, 17898898.
    • (2007) Nat Prod Rep , vol.24 , Issue.5 , pp. 1073-1109
    • Donadio, S.1    Monciardini, P.2    Sosio, M.3
  • 14
    • 0031197020 scopus 로고    scopus 로고
    • Combinatorial approaches to polyketide biosynthesis
    • 10.1016/S1367-5931(97)80005-1, 9734993
    • Leadlay PF. Combinatorial approaches to polyketide biosynthesis. Curr Opin Chem Biol 1997, 1(2):162-168. 10.1016/S1367-5931(97)80005-1, 9734993.
    • (1997) Curr Opin Chem Biol , vol.1 , Issue.2 , pp. 162-168
    • Leadlay, P.F.1
  • 16
    • 0035230281 scopus 로고    scopus 로고
    • Process development and metabolic engineering for the overproduction of natural and unnatural polyketides
    • McDaniel R, Licari P, Khosla C. Process development and metabolic engineering for the overproduction of natural and unnatural polyketides. Adv Biochem Eng Biotechnol 2001, 73:31-52.
    • (2001) Adv Biochem Eng Biotechnol , vol.73 , pp. 31-52
    • McDaniel, R.1    Licari, P.2    Khosla, C.3
  • 17
    • 9444245766 scopus 로고
    • Biochemical mechanisms in the biosynthesis of the erythromycins
    • New York: Springer-Verlag edn, Corcoran JW
    • Corcoran JW. Biochemical mechanisms in the biosynthesis of the erythromycins. Antibiotics IV Biosynthesis 1981, 132-174. New York: Springer-Verlag edn, Corcoran JW.
    • (1981) Antibiotics IV Biosynthesis , pp. 132-174
    • Corcoran, J.W.1
  • 18
    • 0025081416 scopus 로고
    • An unusually large multifunctional polypeptide in the erythromycin-producing polyketide synthase of Saccharopolyspora erythraea
    • 10.1038/348176a0, 2234082
    • Cortes J, Haydock SF, Roberts GA, Bevitt DJ, Leadlay PF. An unusually large multifunctional polypeptide in the erythromycin-producing polyketide synthase of Saccharopolyspora erythraea. Nature 1990, 348(6297):176-178. 10.1038/348176a0, 2234082.
    • (1990) Nature , vol.348 , Issue.6297 , pp. 176-178
    • Cortes, J.1    Haydock, S.F.2    Roberts, G.A.3    Bevitt, D.J.4    Leadlay, P.F.5
  • 19
    • 0026415106 scopus 로고
    • Modular organization of genes required for complex polyketide biosynthesis
    • 10.1126/science.2024119, 2024119
    • Donadio S, Staver MJ, McAlpine JB, Swanson SJ, Katz L. Modular organization of genes required for complex polyketide biosynthesis. Science 1991, 252(5006):675-679. 10.1126/science.2024119, 2024119.
    • (1991) Science , vol.252 , Issue.5006 , pp. 675-679
    • Donadio, S.1    Staver, M.J.2    McAlpine, J.B.3    Swanson, S.J.4    Katz, L.5
  • 20
    • 0027503491 scopus 로고
    • IS1136, an insertion element in the erythromycin gene cluster of Saccharopolyspora erythraea
    • 10.1016/0378-1119(93)90604-2, 8386127
    • Donadio S, Staver MJ. IS1136, an insertion element in the erythromycin gene cluster of Saccharopolyspora erythraea. Gene 1993, 126(1):147-151. 10.1016/0378-1119(93)90604-2, 8386127.
    • (1993) Gene , vol.126 , Issue.1 , pp. 147-151
    • Donadio, S.1    Staver, M.J.2
  • 21
    • 0025275007 scopus 로고
    • Organization of a cluster of erythromycin genes in Saccharopolyspora erythraea
    • 208872, 2185216
    • Weber JM, Leung JO, Maine GT, Potenz RH, Paulus TJ, DeWitt JP. Organization of a cluster of erythromycin genes in Saccharopolyspora erythraea. J Bacteriol 1990, 172(5):2372-2383. 208872, 2185216.
    • (1990) J Bacteriol , vol.172 , Issue.5 , pp. 2372-2383
    • Weber, J.M.1    Leung, J.O.2    Maine, G.T.3    Potenz, R.H.4    Paulus, T.J.5    DeWitt, J.P.6
  • 22
    • 0345440123 scopus 로고    scopus 로고
    • Transcriptional organization of the erythromycin biosynthetic gene cluster of Saccharopolyspora erythraea
    • 94186, 10559177
    • Reeves AR, English RS, Lampel JS, Post DA, Vanden Boom TJ. Transcriptional organization of the erythromycin biosynthetic gene cluster of Saccharopolyspora erythraea. J Bacteriol 1999, 181(22):7098-7106. 94186, 10559177.
    • (1999) J Bacteriol , vol.181 , Issue.22 , pp. 7098-7106
    • Reeves, A.R.1    English, R.S.2    Lampel, J.S.3    Post, D.A.4    Vanden Boom, T.J.5
  • 23
    • 34147183821 scopus 로고    scopus 로고
    • Complete genome sequence of the erythromycin-producing bacterium Saccharopolyspora erythraea NRRL23338
    • 10.1038/nbt1297, 17369815
    • Oliynyk M, Samborskyy M, Lester JB, Mironenko T, Scott N, Dickens S, Haydock SF, Leadlay PF. Complete genome sequence of the erythromycin-producing bacterium Saccharopolyspora erythraea NRRL23338. Nat Biotechnol 2007, 25(4):447-453. 10.1038/nbt1297, 17369815.
    • (2007) Nat Biotechnol , vol.25 , Issue.4 , pp. 447-453
    • Oliynyk, M.1    Samborskyy, M.2    Lester, J.B.3    Mironenko, T.4    Scott, N.5    Dickens, S.6    Haydock, S.F.7    Leadlay, P.F.8
  • 25
    • 77957901506 scopus 로고    scopus 로고
    • Identifying modules of coexpressed transcript units and their organization of Saccharopolyspora erythraea from time series gene expression profiles
    • Chang X, Liu S, Yu YT, Li YX, Li YY. Identifying modules of coexpressed transcript units and their organization of Saccharopolyspora erythraea from time series gene expression profiles. PLoS One 8 5:e12126.
    • PLoS One 8 , vol.5
    • Chang, X.1    Liu, S.2    Yu, Y.T.3    Li, Y.X.4    Li, Y.Y.5
  • 26
    • 0031917743 scopus 로고    scopus 로고
    • The bldD gene of Streptomyces coelicolor A3(2): a regulatory gene involved in morphogenesis and antibiotic production
    • 107056, 9515925
    • Elliot M, Damji F, Passantino R, Chater K, Leskiw B. The bldD gene of Streptomyces coelicolor A3(2): a regulatory gene involved in morphogenesis and antibiotic production. J Bacteriol 1998, 180(6):1549-1555. 107056, 9515925.
    • (1998) J Bacteriol , vol.180 , Issue.6 , pp. 1549-1555
    • Elliot, M.1    Damji, F.2    Passantino, R.3    Chater, K.4    Leskiw, B.5
  • 27
    • 0035044086 scopus 로고    scopus 로고
    • BldD is a direct regulator of key developmental genes in Streptomyces coelicolor A3(2)
    • 10.1046/j.1365-2958.2001.02387.x, 11298292
    • Elliot MA, Bibb MJ, Buttner MJ, Leskiw BK. BldD is a direct regulator of key developmental genes in Streptomyces coelicolor A3(2). Mol Microbiol 2001, 40(1):257-269. 10.1046/j.1365-2958.2001.02387.x, 11298292.
    • (2001) Mol Microbiol , vol.40 , Issue.1 , pp. 257-269
    • Elliot, M.A.1    Bibb, M.J.2    Buttner, M.J.3    Leskiw, B.K.4
  • 28
    • 49649123572 scopus 로고    scopus 로고
    • A key developmental regulator controls the synthesis of the antibiotic erythromycin in Saccharopolyspora erythraea
    • 10.1073/pnas.0803622105, 2516264, 18685110
    • Chng C, Lum AM, Vroom JA, Kao CM. A key developmental regulator controls the synthesis of the antibiotic erythromycin in Saccharopolyspora erythraea. Proc Natl Acad Sci USA 2008, 105(32):11346-11351. 10.1073/pnas.0803622105, 2516264, 18685110.
    • (2008) Proc Natl Acad Sci USA , vol.105 , Issue.32 , pp. 11346-11351
    • Chng, C.1    Lum, A.M.2    Vroom, J.A.3    Kao, C.M.4
  • 29
    • 4544297816 scopus 로고    scopus 로고
    • Engineering precursor flow for increased erythromycin production in Aeromicrobium erythreum
    • 10.1016/j.ymben.2004.03.003, 15491860
    • Reeves AR, Cernota WH, Brikun IA, Wesley RK, Weber JM. Engineering precursor flow for increased erythromycin production in Aeromicrobium erythreum. Metab Eng 2004, 6(4):300-312. 10.1016/j.ymben.2004.03.003, 15491860.
    • (2004) Metab Eng , vol.6 , Issue.4 , pp. 300-312
    • Reeves, A.R.1    Cernota, W.H.2    Brikun, I.A.3    Wesley, R.K.4    Weber, J.M.5
  • 30
    • 33745036968 scopus 로고    scopus 로고
    • Effects of methylmalonyl-CoA mutase gene knockouts on erythromycin production in carbohydrate-based and oil-based fermentations of Saccharopolyspora erythraea
    • 10.1007/s10295-006-0094-3, 16491356
    • Reeves AR, Brikun IA, Cernota WH, Leach BI, Gonzalez MC, Weber JM. Effects of methylmalonyl-CoA mutase gene knockouts on erythromycin production in carbohydrate-based and oil-based fermentations of Saccharopolyspora erythraea. J Ind Microbiol Biotechnol 2006, 33(7):600-609. 10.1007/s10295-006-0094-3, 16491356.
    • (2006) J Ind Microbiol Biotechnol , vol.33 , Issue.7 , pp. 600-609
    • Reeves, A.R.1    Brikun, I.A.2    Cernota, W.H.3    Leach, B.I.4    Gonzalez, M.C.5    Weber, J.M.6
  • 31
    • 67650469476 scopus 로고    scopus 로고
    • Antibiotic overproduction by rpsL and rsmG mutants of various actinomycetes
    • 10.1128/AEM.00681-09, 2708438, 19447953
    • Tanaka Y, Komatsu M, Okamoto S, Tokuyama S, Kaji A, Ikeda H, Ochi K. Antibiotic overproduction by rpsL and rsmG mutants of various actinomycetes. Appl Environ Microbiol 2009, 75(14):4919-4922. 10.1128/AEM.00681-09, 2708438, 19447953.
    • (2009) Appl Environ Microbiol , vol.75 , Issue.14 , pp. 4919-4922
    • Tanaka, Y.1    Komatsu, M.2    Okamoto, S.3    Tokuyama, S.4    Kaji, A.5    Ikeda, H.6    Ochi, K.7
  • 32
    • 64949203863 scopus 로고    scopus 로고
    • Phenotypes and gene expression profiles of Saccharopolyspora erythraea rifampicin-resistant (rif) mutants affected in erythromycin production
    • 10.1186/1475-2859-8-18, 2667423, 19331655
    • Carata E, Peano C, Tredici SM, Ferrari F, Tala A, Corti G, Bicciato S, De Bellis G, Alifano P. Phenotypes and gene expression profiles of Saccharopolyspora erythraea rifampicin-resistant (rif) mutants affected in erythromycin production. Microb Cell Fact 2009, 8:18. 10.1186/1475-2859-8-18, 2667423, 19331655.
    • (2009) Microb Cell Fact , vol.8 , pp. 18
    • Carata, E.1    Peano, C.2    Tredici, S.M.3    Ferrari, F.4    Tala, A.5    Corti, G.6    Bicciato, S.7    De Bellis, G.8    Alifano, P.9
  • 33
    • 78649386219 scopus 로고    scopus 로고
    • Complete biosynthesis of erythromycin A and designed analogs using E. coli as a heterologous host
    • 10.1016/j.chembiol.2010.09.013, 21095573
    • Zhang H, Wang Y, Wu J, Skalina K, Pfeifer BA. Complete biosynthesis of erythromycin A and designed analogs using E. coli as a heterologous host. Chem Biol 2010, 17(11):1232-1240. 10.1016/j.chembiol.2010.09.013, 21095573.
    • (2010) Chem Biol , vol.17 , Issue.11 , pp. 1232-1240
    • Zhang, H.1    Wang, Y.2    Wu, J.3    Skalina, K.4    Pfeifer, B.A.5
  • 34
    • 3242727731 scopus 로고    scopus 로고
    • Reverse engineering of industrial pharmaceutical-producing actinomycete strains using DNA microarrays
    • 10.1016/j.ymben.2003.12.001, 15256208
    • Lum AM, Huang J, Hutchinson CR, Kao CM. Reverse engineering of industrial pharmaceutical-producing actinomycete strains using DNA microarrays. Metab Eng 2004, 6(3):186-196. 10.1016/j.ymben.2003.12.001, 15256208.
    • (2004) Metab Eng , vol.6 , Issue.3 , pp. 186-196
    • Lum, A.M.1    Huang, J.2    Hutchinson, C.R.3    Kao, C.M.4
  • 35
    • 33750407286 scopus 로고    scopus 로고
    • A locally adaptive statistical procedure (LAP) to identify differentially expressed chromosomal regions
    • 10.1093/bioinformatics/btl455, 16951291
    • Callegaro A, Basso D, Bicciato S. A locally adaptive statistical procedure (LAP) to identify differentially expressed chromosomal regions. Bioinformatics 2006, 22(21):2658-2666. 10.1093/bioinformatics/btl455, 16951291.
    • (2006) Bioinformatics , vol.22 , Issue.21 , pp. 2658-2666
    • Callegaro, A.1    Basso, D.2    Bicciato, S.3
  • 36
    • 34147156774 scopus 로고    scopus 로고
    • Antibiotic production from the ground up
    • 10.1038/nbt0407-428, 17420748
    • Katz L, Khosla C. Antibiotic production from the ground up. Nat Biotechnol 2007, 25(4):428-429. 10.1038/nbt0407-428, 17420748.
    • (2007) Nat Biotechnol , vol.25 , Issue.4 , pp. 428-429
    • Katz, L.1    Khosla, C.2
  • 38
    • 33744752145 scopus 로고    scopus 로고
    • Subcellular partitioning of transcription factors in Bacillus subtilis
    • 10.1128/JB.01934-05, 1482919, 16707701
    • Doherty GP, Meredith DH, Lewis PJ. Subcellular partitioning of transcription factors in Bacillus subtilis. J Bacteriol 2006, 188(11):4101-4110. 10.1128/JB.01934-05, 1482919, 16707701.
    • (2006) J Bacteriol , vol.188 , Issue.11 , pp. 4101-4110
    • Doherty, G.P.1    Meredith, D.H.2    Lewis, P.J.3
  • 39
    • 57749115164 scopus 로고    scopus 로고
    • Structural and functional analysis of the E. coli NusB-S10 transcription antitermination complex
    • 10.1016/j.molcel.2008.10.028, 2627990, 19111659
    • Luo X, Hsiao HH, Bubunenko M, Weber G, Court DL, Gottesman ME, Urlaub H, Wahl MC. Structural and functional analysis of the E. coli NusB-S10 transcription antitermination complex. Mol Cell 2008, 32(6):791-802. 10.1016/j.molcel.2008.10.028, 2627990, 19111659.
    • (2008) Mol Cell , vol.32 , Issue.6 , pp. 791-802
    • Luo, X.1    Hsiao, H.H.2    Bubunenko, M.3    Weber, G.4    Court, D.L.5    Gottesman, M.E.6    Urlaub, H.7    Wahl, M.C.8
  • 40
    • 57749097722 scopus 로고    scopus 로고
    • Transcription by moonlight: structural basis of an extraribosomal activity of ribosomal protein S10
    • 10.1016/j.molcel.2008.12.010, 19111651
    • Weisberg RA. Transcription by moonlight: structural basis of an extraribosomal activity of ribosomal protein S10. Mol Cell 2008, 32(6):747-748. 10.1016/j.molcel.2008.12.010, 19111651.
    • (2008) Mol Cell , vol.32 , Issue.6 , pp. 747-748
    • Weisberg, R.A.1
  • 41
    • 14244264774 scopus 로고    scopus 로고
    • Transcriptional polarity in rRNA operons of Escherichia coli nusA and nusB mutant strains
    • 10.1128/JB.187.5.1632-1638.2005, 1063997, 15716433
    • Quan S, Zhang N, French S, Squires CL. Transcriptional polarity in rRNA operons of Escherichia coli nusA and nusB mutant strains. J Bacteriol 2005, 187(5):1632-1638. 10.1128/JB.187.5.1632-1638.2005, 1063997, 15716433.
    • (2005) J Bacteriol , vol.187 , Issue.5 , pp. 1632-1638
    • Quan, S.1    Zhang, N.2    French, S.3    Squires, C.L.4
  • 42
    • 0030922782 scopus 로고    scopus 로고
    • The ppGpp synthetase gene (relA) of Streptomyces coelicolor A3(2) plays a conditional role in antibiotic production and morphological differentiation
    • 179477, 9294445
    • Chakraburtty R, Bibb M. The ppGpp synthetase gene (relA) of Streptomyces coelicolor A3(2) plays a conditional role in antibiotic production and morphological differentiation. J Bacteriol 1997, 179(18):5854-5861. 179477, 9294445.
    • (1997) J Bacteriol , vol.179 , Issue.18 , pp. 5854-5861
    • Chakraburtty, R.1    Bibb, M.2
  • 43
    • 17544367082 scopus 로고    scopus 로고
    • A relA/spoT homologous gene from Streptomyces coelicolor A3(2) controls antibiotic biosynthetic genes
    • 10.1074/jbc.271.18.10627, 8631867
    • Martinez-Costa OH, Arias P, Romero NM, Parro V, Mellado RP, Malpartida F. A relA/spoT homologous gene from Streptomyces coelicolor A3(2) controls antibiotic biosynthetic genes. J Biol Chem 1996, 271(18):10627-10634. 10.1074/jbc.271.18.10627, 8631867.
    • (1996) J Biol Chem , vol.271 , Issue.18 , pp. 10627-10634
    • Martinez-Costa, O.H.1    Arias, P.2    Romero, N.M.3    Parro, V.4    Mellado, R.P.5    Malpartida, F.6
  • 44
    • 0023626550 scopus 로고
    • Metabolic initiation of differentiation and secondary metabolism by Streptomyces griseus: significance of the stringent response (ppGpp) and GTP content in relation to A factor
    • 212439, 3112126
    • Ochi K. Metabolic initiation of differentiation and secondary metabolism by Streptomyces griseus: significance of the stringent response (ppGpp) and GTP content in relation to A factor. J Bacteriol 1987, 169(8):3608-3616. 212439, 3112126.
    • (1987) J Bacteriol , vol.169 , Issue.8 , pp. 3608-3616
    • Ochi, K.1
  • 45
    • 34347344063 scopus 로고    scopus 로고
    • From microbial differentiation to ribosome engineering
    • 10.1271/bbb.70007, 17587668
    • Ochi K. From microbial differentiation to ribosome engineering. Biosci Biotechnol Biochem 2007, 71(6):1373-1386. 10.1271/bbb.70007, 17587668.
    • (2007) Biosci Biotechnol Biochem , vol.71 , Issue.6 , pp. 1373-1386
    • Ochi, K.1
  • 46
    • 0026030777 scopus 로고
    • The stringent response in Streptomyces coelicolor A3(2)
    • 10.1111/j.1365-2958.1991.tb02109.x, 1710311
    • Strauch E, Takano E, Baylis HA, Bibb MJ. The stringent response in Streptomyces coelicolor A3(2). Mol Microbiol 1991, 5(2):289-298. 10.1111/j.1365-2958.1991.tb02109.x, 1710311.
    • (1991) Mol Microbiol , vol.5 , Issue.2 , pp. 289-298
    • Strauch, E.1    Takano, E.2    Baylis, H.A.3    Bibb, M.J.4
  • 47
    • 63449126395 scopus 로고    scopus 로고
    • Activation of dormant bacterial genes by Nonomuraea sp. strain ATCC 39727 mutant-type RNA polymerase
    • 10.1128/JB.01311-08, 2632078, 19047343
    • Tala A, Wang G, Zemanova M, Okamoto S, Ochi K, Alifano P. Activation of dormant bacterial genes by Nonomuraea sp. strain ATCC 39727 mutant-type RNA polymerase. J Bacteriol 2009, 191(3):805-814. 10.1128/JB.01311-08, 2632078, 19047343.
    • (2009) J Bacteriol , vol.191 , Issue.3 , pp. 805-814
    • Tala, A.1    Wang, G.2    Zemanova, M.3    Okamoto, S.4    Ochi, K.5    Alifano, P.6
  • 48
    • 77954837414 scopus 로고    scopus 로고
    • Guanosine 5'-diphosphate 3'-diphosphate (ppGpp) as a negative modulator of polynucleotide phosphorylase activity in a 'rare' actinomycete
    • 10.1111/j.1365-2958.2010.07240.x, 20545843
    • Siculella L, Damiano F, di Summa R, Tredici SM, Alduina R, Gnoni GV, Alifano P. Guanosine 5'-diphosphate 3'-diphosphate (ppGpp) as a negative modulator of polynucleotide phosphorylase activity in a 'rare' actinomycete. Mol Microbiol 2010, 77(3):716-729. 10.1111/j.1365-2958.2010.07240.x, 20545843.
    • (2010) Mol Microbiol , vol.77 , Issue.3 , pp. 716-729
    • Siculella, L.1    Damiano, F.2    di Summa, R.3    Tredici, S.M.4    Alduina, R.5    Gnoni, G.V.6    Alifano, P.7
  • 49
    • 0031450392 scopus 로고    scopus 로고
    • The gene encoding the elongation factor P protein is essential for viability and is required for protein synthesis
    • 10.1074/jbc.272.51.32254, 9405429
    • Aoki H, Dekany K, Adams SL, Ganoza MC. The gene encoding the elongation factor P protein is essential for viability and is required for protein synthesis. J Biol Chem 1997, 272(51):32254-32259. 10.1074/jbc.272.51.32254, 9405429.
    • (1997) J Biol Chem , vol.272 , Issue.51 , pp. 32254-32259
    • Aoki, H.1    Dekany, K.2    Adams, S.L.3    Ganoza, M.C.4
  • 50
    • 38549118801 scopus 로고    scopus 로고
    • Interactions of elongation factor EF-P with the Escherichia coli ribosome
    • 10.1111/j.1742-4658.2007.06228.x, 18201202
    • Aoki H, Xu J, Emili A, Chosay JG, Golshani A, Ganoza MC. Interactions of elongation factor EF-P with the Escherichia coli ribosome. FEBS J 2008, 275(4):671-681. 10.1111/j.1742-4658.2007.06228.x, 18201202.
    • (2008) FEBS J , vol.275 , Issue.4 , pp. 671-681
    • Aoki, H.1    Xu, J.2    Emili, A.3    Chosay, J.G.4    Golshani, A.5    Ganoza, M.C.6
  • 51
    • 69249118597 scopus 로고    scopus 로고
    • Formation of the first peptide bond: the structure of EF-P bound to the 70S ribosome
    • 10.1126/science.1175800, 3296453, 19696344
    • Blaha G, Stanley RE, Steitz TA. Formation of the first peptide bond: the structure of EF-P bound to the 70S ribosome. Science 2009, 325(5943):966-970. 10.1126/science.1175800, 3296453, 19696344.
    • (2009) Science , vol.325 , Issue.5943 , pp. 966-970
    • Blaha, G.1    Stanley, R.E.2    Steitz, T.A.3
  • 52
    • 3142657600 scopus 로고    scopus 로고
    • Expression profiling of translation-associated genes in sporulating Bacillus subtilis and consequence of sporulation by gene inactivation
    • 10.1271/bbb.67.2245, 14586115
    • Ohashi Y, Inaoka T, Kasai K, Ito Y, Okamoto S, Satsu H, Tozawa Y, Kawamura F, Ochi K. Expression profiling of translation-associated genes in sporulating Bacillus subtilis and consequence of sporulation by gene inactivation. Biosci Biotechnol Biochem 2003, 67(10):2245-2253. 10.1271/bbb.67.2245, 14586115.
    • (2003) Biosci Biotechnol Biochem , vol.67 , Issue.10 , pp. 2245-2253
    • Ohashi, Y.1    Inaoka, T.2    Kasai, K.3    Ito, Y.4    Okamoto, S.5    Satsu, H.6    Tozawa, Y.7    Kawamura, F.8    Ochi, K.9
  • 54
    • 84903541137 scopus 로고    scopus 로고
    • Determination of erythromycins in fermentation broth using liquid phase extraction with back extraction combined with high performance liquid chromatography
    • doi:10.1016/j.arabjc.2010.10.033
    • Kamareia F, Attara H, Nikjahb S, Goodarzi M. Determination of erythromycins in fermentation broth using liquid phase extraction with back extraction combined with high performance liquid chromatography. Arabian Journal of Chemisty 2010, doi:10.1016/j.arabjc.2010.10.033.
    • (2010) Arabian Journal of Chemisty
    • Kamareia, F.1    Attara, H.2    Nikjahb, S.3    Goodarzi, M.4
  • 55
    • 0017897545 scopus 로고
    • HPLC as a rapid means of monitoring erythromycin and tetracycline fermentation processes
    • Tokyo, 10.7164/antibiotics.31.302, 659328
    • Tsuji K, Goetz JF. HPLC as a rapid means of monitoring erythromycin and tetracycline fermentation processes. J Antibiot 1978, 31(4):302-308. Tokyo, 10.7164/antibiotics.31.302, 659328.
    • (1978) J Antibiot , vol.31 , Issue.4 , pp. 302-308
    • Tsuji, K.1    Goetz, J.F.2
  • 59
    • 84861345672 scopus 로고    scopus 로고
    • MUMMER
    • MUMMER. , http://mummer.sourceforge.net
  • 60
    • 0142121516 scopus 로고    scopus 로고
    • Exploration, normalization, and summaries of high density oligonucleotide array probe level data
    • 10.1093/biostatistics/4.2.249, 12925520
    • Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U, Speed TP. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 2003, 4(2):249-264. 10.1093/biostatistics/4.2.249, 12925520.
    • (2003) Biostatistics , vol.4 , Issue.2 , pp. 249-264
    • Irizarry, R.A.1    Hobbs, B.2    Collin, F.3    Beazer-Barclay, Y.D.4    Antonellis, K.J.5    Scherf, U.6    Speed, T.P.7
  • 61
    • 34147123145 scopus 로고    scopus 로고
    • The optimal discovery procedure for large-scale significance testing, with applications to comparative microarray experiments
    • Storey JD, Dai JY, Leek JT. The optimal discovery procedure for large-scale significance testing, with applications to comparative microarray experiments. Biostatistics 2007, 8(2):414-432.
    • (2007) Biostatistics , vol.8 , Issue.2 , pp. 414-432
    • Storey, J.D.1    Dai, J.Y.2    Leek, J.T.3
  • 62
    • 24644519314 scopus 로고    scopus 로고
    • Significance analysis of time course microarray experiments
    • 10.1073/pnas.0504609102, 1201697, 16141318
    • Storey JD, Xiao W, Leek JT, Tompkins RG, Davis RW. Significance analysis of time course microarray experiments. Proc Natl Acad Sci USA 2005, 102(36):12837-12842. 10.1073/pnas.0504609102, 1201697, 16141318.
    • (2005) Proc Natl Acad Sci USA , vol.102 , Issue.36 , pp. 12837-12842
    • Storey, J.D.1    Xiao, W.2    Leek, J.T.3    Tompkins, R.G.4    Davis, R.W.5
  • 63
    • 80051948790 scopus 로고    scopus 로고
    • PREDA: an R-package to identify regional variations in genomic data
    • 10.1093/bioinformatics/btr404, 21742634
    • Ferrari F, Solari A, Battaglia C, Bicciato S. PREDA: an R-package to identify regional variations in genomic data. Bioinformatics 2011, 27(17):2446-2447. 10.1093/bioinformatics/btr404, 21742634.
    • (2011) Bioinformatics , vol.27 , Issue.17 , pp. 2446-2447
    • Ferrari, F.1    Solari, A.2    Battaglia, C.3    Bicciato, S.4
  • 64
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • 10.1073/pnas.1530509100, 170937, 12883005
    • Storey JD, Tibshirani R. Statistical significance for genomewide studies. Proc Natl Acad Sci USA 2003, 100(16):9440-9445. 10.1073/pnas.1530509100, 170937, 12883005.
    • (2003) Proc Natl Acad Sci USA , vol.100 , Issue.16 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 65
    • 0035793042 scopus 로고    scopus 로고
    • Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection
    • 10.1073/pnas.011404098, 14539, 11134512
    • Li C, Wong WH. Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection. Proc Natl Acad Sci USA 2001, 98(1):31-36. 10.1073/pnas.011404098, 14539, 11134512.
    • (2001) Proc Natl Acad Sci USA , vol.98 , Issue.1 , pp. 31-36
    • Li, C.1    Wong, W.H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.