메뉴 건너뛰기




Volumn 22, Issue 21, 2006, Pages 2658-2666

A locally adaptive statistical procedure (LAP) to identify differentially expressed chromosomal regions

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ACUTE GRANULOCYTIC LEUKEMIA; ACUTE LYMPHOBLASTIC LEUKEMIA; ARTICLE; BRAIN TUMOR; CALCULATION; CANCER SURVIVAL; CHROMOSOME ABERRATION; CHROMOSOME ANALYSIS; CHROMOSOME STRUCTURE; CHROMOSOME TRANSLOCATION 12; CHROMOSOME TRANSLOCATION 21; CHROMOSOME TRANSLOCATION 22; CHROMOSOME TRANSLOCATION 9; CONTROLLED STUDY; GENE EXPRESSION PROFILING; GENE LOCATION; GENE STRUCTURE; GENETIC DISTANCE; GENETIC TRANSCRIPTION; HUMAN; INFORMATION PROCESSING; PRIORITY JOURNAL; STATISTICAL ANALYSIS; STATISTICAL PARAMETERS; STATISTICAL SIGNIFICANCE; TUMOR;

EID: 33750407286     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btl455     Document Type: Article
Times cited : (32)

References (30)
  • 1
    • 0035895502 scopus 로고    scopus 로고
    • The human transcriptome map: Clustering of highly expressed genes in chromosomal domains
    • Caron,H. et al. (2001) The human transcriptome map: Clustering of highly expressed genes in chromosomal domains. Science, 291, 1289-1292.
    • (2001) Science , vol.291 , pp. 1289-1292
    • Caron, H.1
  • 2
    • 33750416390 scopus 로고    scopus 로고
    • Integration of whole-genome SNP mapping and transcriptional data in the human metastatic renal carcinoma Caki-1 cell line
    • (submitted)
    • Cifola,I. et al. (2006) Integration of whole-genome SNP mapping and transcriptional data in the human metastatic renal carcinoma Caki-1 cell line. BMC Genomics, (submitted).
    • (2006) BMC Genomics
    • Cifola, I.1
  • 3
    • 0038581906 scopus 로고    scopus 로고
    • Identification of frequent cytogenetic aberrations in hepatocellular carcinoma using gene-expression microarray data
    • RESEARCH0075
    • Crawley,J.J. and Furge,KA. (2002) Identification of frequent cytogenetic aberrations in hepatocellular carcinoma using gene-expression microarray data. Genome Biol., 3, RESEARCH0075.
    • (2002) Genome Biol. , pp. 3
    • Crawley, J.J.1    Furge, K.A.2
  • 4
    • 11144354901 scopus 로고    scopus 로고
    • Identification of genes associated with tumorigenesis and metastatic potential of hypopharyngeal cancer by microarray analysis
    • Cromer,A. et al. (2004) Identification of genes associated with tumorigenesis and metastatic potential of hypopharyngeal cancer by microarray analysis. Oncogene, 23, 2484-2498.
    • (2004) Oncogene , vol.23 , pp. 2484-2498
    • Cromer, A.1
  • 5
    • 3042667856 scopus 로고    scopus 로고
    • Robust classification of renal cell carcinoma based on gene expression data and predicted cytogenetic profiles
    • Furge,K.A. et al. (2004) Robust classification of renal cell carcinoma based on gene expression data and predicted cytogenetic profiles. Cancer Res., 64, 4117-4121.
    • (2004) Cancer Res. , vol.64 , pp. 4117-4121
    • Furge, K.A.1
  • 6
    • 0031286812 scopus 로고    scopus 로고
    • Local bandwidth choice in kernel regression estimation
    • Herrmann,E. (1997) Local bandwidth choice in kernel regression estimation. J. Graphic. Comput. Statist., 6, 35-54.
    • (1997) J. Graphic. Comput. Statist. , vol.6 , pp. 35-54
    • Herrmann, E.1
  • 7
    • 14944343419 scopus 로고    scopus 로고
    • Microarray analyses reveal strong influence of DNA copy number alterations on the transcriptional patterns in pancreatic cancer: Implications for the interpretation of genomic amplifications
    • Heidenblad,M. et al. (2005) Microarray analyses reveal strong influence of DNA copy number alterations on the transcriptional patterns in pancreatic cancer: Implications for the interpretation of genomic amplifications. Oncogene, 24, 1794-1801.
    • (2005) Oncogene , vol.24 , pp. 1794-1801
    • Heidenblad, M.1
  • 8
    • 0348143197 scopus 로고    scopus 로고
    • Combining DNA expression with positional information to detect functional silencing of chromosomal regions
    • Husing,J. et al. (2003) Combining DNA expression with positional information to detect functional silencing of chromosomal regions. Bioinformatics, 19, 2335-2342.
    • (2003) Bioinformatics , vol.19 , pp. 2335-2342
    • Husing, J.1
  • 9
    • 0036829790 scopus 로고    scopus 로고
    • Impact of DNA amplification on gene expression patterns in breast cancer
    • Hyman,E. et al. (2002) Impact of DNA amplification on gene expression patterns in breast cancer. Cancer Res., 62, 6240-6245.
    • (2002) Cancer Res. , vol.62 , pp. 6240-6245
    • Hyman, E.1
  • 10
    • 24644519817 scopus 로고    scopus 로고
    • Two types of chromosome 1p losses with opposite significance in gliomas
    • Idbaih,A. et al. (2005) Two types of chromosome 1p losses with opposite significance in gliomas. Ann. Neurol., 58, 483-487.
    • (2005) Ann. Neurol. , vol.58 , pp. 483-487
    • Idbaih, A.1
  • 11
    • 0030305457 scopus 로고    scopus 로고
    • R: A language for data analysis and graphics
    • Ihaka,R. and Gentleman,R. (1996) R: A language for data analysis and graphics. J. Comput. Graphic. Statist., 5, 299-314.
    • (1996) J. Comput. Graphic. Statist. , vol.5 , pp. 299-314
    • Ihaka, R.1    Gentleman, R.2
  • 12
    • 0141591466 scopus 로고    scopus 로고
    • Expression imbalance map: A new visualization method for detection of mRNA expression imbalance regions
    • Kano,M. et al. (2003) Expression imbalance map: A new visualization method for detection of mRNA expression imbalance regions. Physiol. Genomics, 13, 31-46.
    • (2003) Physiol. Genomics , vol.13 , pp. 31-46
    • Kano, M.1
  • 13
    • 0141506898 scopus 로고    scopus 로고
    • A unification of mosaic structures in the human genome
    • Lercher,M.J. et al. (2003) A unification of mosaic structures in the human genome. Hum. Mol. Genet., 12, 2411-2415.
    • (2003) Hum. Mol. Genet. , vol.12 , pp. 2411-2415
    • Lercher, M.J.1
  • 14
    • 20844454367 scopus 로고    scopus 로고
    • A model-based scan statistic for identifying extreme chromosomal regions of gene expression in human tumors
    • Levin,A.M. et al. (2005) A model-based scan statistic for identifying extreme chromosomal regions of gene expression in human tumors. Bioinformatics, 21, 2867-2874.
    • (2005) Bioinformatics , vol.21 , pp. 2867-2874
    • Levin, A.M.1
  • 15
    • 0035979187 scopus 로고    scopus 로고
    • Comparative expressed sequence hybridization to chromosomes for tumor classification and identification of genomic regions of differential gene expression
    • Lu,Y.J. et al. (2001) Comparative expressed sequence hybridization to chromosomes for tumor classification and identification of genomic regions of differential gene expression. Proc. Natl Acad. Sci. USA, 98, 9197-9202.
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 9197-9202
    • Lu, Y.J.1
  • 16
    • 2942588529 scopus 로고    scopus 로고
    • Gene expression alterations over large chromosomal regions in cancers include multiple genes unrelated to malignant progression
    • Masayesva,B.G. et al. (2004) Gene expression alterations over large chromosomal regions in cancers include multiple genes unrelated to malignant progression. Proc. Natl Acad. Sci. USA, 101, 8715-8720.
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 8715-8720
    • Masayesva, B.G.1
  • 17
    • 5644258323 scopus 로고    scopus 로고
    • Distinct chromosomal bias of gene expression signatures in the progression of hepatocellular carcinoma
    • Midorikawa,Y. et al. (2004) Distinct chromosomal bias of gene expression signatures in the progression of hepatocellular carcinoma. Cancer Res., 64, 7263-7270.
    • (2004) Cancer Res. , vol.64 , pp. 7263-7270
    • Midorikawa, Y.1
  • 18
    • 0037381008 scopus 로고    scopus 로고
    • Gene expression-based classification of malignant gliomas correlates better with survival than histological classification
    • Nutt,C.L. et al. (2003) Gene expression-based classification of malignant gliomas correlates better with survival than histological classification. Cancer Res., 63, 1602-1607.
    • (2003) Cancer Res. , vol.63 , pp. 1602-1607
    • Nutt, C.L.1
  • 19
    • 11844252527 scopus 로고    scopus 로고
    • Formation of der(19)t(1;19)(q23;p13) in acute lymphoblastic leukemia
    • Paulsson,K. et al. (2005) Formation of der(19)t(1;19)(q23;p13) in acute lymphoblastic leukemia. Genes Chromosomes Cancer, 42, 144-148.
    • (2005) Genes Chromosomes Cancer , vol.42 , pp. 144-148
    • Paulsson, K.1
  • 20
    • 13844250828 scopus 로고    scopus 로고
    • Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors
    • Pollack,J.R. et al. (2002) Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors. Proc. Natl Acad. Sci. USA, 99, 12963-12968.
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 12963-12968
    • Pollack, J.R.1
  • 21
    • 13944263929 scopus 로고    scopus 로고
    • Visualizing chromosomes as transcriptome correlation maps: Evidence of chromosomal domains containing co-expressed genes - A study of 130 invasive ductal breast carcinomas
    • Reyal,F. et al. (2005) Visualizing chromosomes as transcriptome correlation maps: Evidence of chromosomal domains containing co-expressed genes - a study of 130 invasive ductal breast carcinomas. Cancer Res., 65, 1376-1383.
    • (2005) Cancer Res. , vol.65 , pp. 1376-1383
    • Reyal, F.1
  • 22
    • 0141993002 scopus 로고    scopus 로고
    • Classification of pediatric acute lymphoblastic leukemia by gene expression profiling
    • Ross,M.E. et al. (2003) Classification of pediatric acute lymphoblastic leukemia by gene expression profiling. Blood, 102, 2951-2959.
    • (2003) Blood , vol.102 , pp. 2951-2959
    • Ross, M.E.1
  • 23
    • 0036136919 scopus 로고    scopus 로고
    • Histopathological-molecular genetic correlations in referral pathologist-diagnosed low-grade 'oligodendroglioma'
    • Sasaki,H. et al. (2002) Histopathological-molecular genetic correlations in referral pathologist-diagnosed low-grade 'oligodendroglioma'. J. Neuropathol. Exp. Neurol., 61, 58-63.
    • (2002) J. Neuropathol. Exp. Neurol. , vol.61 , pp. 58-63
    • Sasaki, H.1
  • 24
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genome-wide experiments
    • Storey,J.D. and Tibshirani,R. (2003) Statistical significance for genome-wide experiments. Proc. Natl Acad. Sci. USA, 100, 9440-9445.
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 25
    • 18744366663 scopus 로고    scopus 로고
    • MACAT - Microarray chromosome analysis tool
    • Toedling,J. et al. (2005) MACAT - microarray chromosome analysis tool. Bioinformatics, 21, 2112-2113.
    • (2005) Bioinformatics , vol.21 , pp. 2112-2113
    • Toedling, J.1
  • 26
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • Tusher,V.G. et al. (2001) Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl Acad. Sci. USA, 98, 5116-5121.
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 5116-5121
    • Tusher, V.G.1
  • 27
    • 0141854009 scopus 로고    scopus 로고
    • The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes
    • Versteeg,R. et al. (2003) The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes. Genome Res., 13, 1998-2004.
    • (2003) Genome Res. , vol.13 , pp. 1998-2004
    • Versteeg, R.1
  • 28
    • 0035970039 scopus 로고    scopus 로고
    • Expression profiling reveals fundamental biological differences in acute myeloid leukemia with isolated trisomy 8 and normal cytogenetics
    • Virtaneva,K. et al. (2001) Expression profiling reveals fundamental biological differences in acute myeloid leukemia with isolated trisomy 8 and normal cytogenetics. Proc. Natl Acad. Sci. USA, 98, 1124-1129.
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 1124-1129
    • Virtaneva, K.1
  • 29
    • 0141619346 scopus 로고    scopus 로고
    • Genome-wide identification of chromosomal regions of increased tumor expression by transcriptome analysis
    • Zhou,Y. et al. (2003) Genome-wide identification of chromosomal regions of increased tumor expression by transcriptome analysis. Cancer Res., 63, 5781-5784.
    • (2003) Cancer Res. , vol.63 , pp. 5781-5784
    • Zhou, Y.1
  • 30
    • 18844385432 scopus 로고    scopus 로고
    • Identification of discrete chromosomal deletion by binary recursive partitioning of microarray differential expression data
    • Zhou,X. et al. (2005) Identification of discrete chromosomal deletion by binary recursive partitioning of microarray differential expression data. J. Med. Genet., 42, 416-419.
    • (2005) J. Med. Genet. , vol.42 , pp. 416-419
    • Zhou, X.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.