Expression profiling of translation-associated genes in sporulating Bacillus subtilis and consequence of sporulation by gene inactivation

Bioscience, Biotechnology and Biochemistry

Volumn 67, Issue 10, 2003, Pages 2245-2253

  Ohashi, Yoshiaki ^a,c   Inaoka, Takashi ^a   Kasai, Koji ^a   Ito, Yasuhiro ^a   Okamoto, Susumu ^a   Satsu, Hideo ^a   Tozawa, Yuzuru ^a   Kawamura, Fujio ^b   Ochi, Kozo ^a  

^a NATIONAL FOOD RESEARCH INSTITUTE   (Japan)

^b RIKKYO UNIVERSITY   (Japan)

^c KEIO UNIVERSITY   (Japan)

Author keywords

DNA microarray; Gene expression; Ribosome; Sporulation; Translation

Indexed keywords

BACILLUS SUBTILIS;

RIBOSOME PROTEIN;

ARTICLE; BACILLUS SUBTILIS; BACTERIAL SPORE; DNA MICROARRAY; GENE EXPRESSION PROFILING; GENE SILENCING; GENETICS; MUTATION; PHYSIOLOGY; PROTEIN SYNTHESIS; SITE DIRECTED MUTAGENESIS;

BACILLUS SUBTILIS; GENE EXPRESSION PROFILING; GENE SILENCING; MUTAGENESIS, SITE-DIRECTED; MUTATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PROTEIN BIOSYNTHESIS; RIBOSOMAL PROTEINS; SPORES, BACTERIAL;

EID: 3142657600     PISSN: 09168451     EISSN: None     Source Type: Journal    
DOI: 10.1271/bbb.67.2245     Document Type: Article

References (37)

1. Kraal, B., Lippmann, C., and Kleanthous, C., Translational regulation by modifications of the elongation factor Tu. Folia Microbiol. (Praha), 44, 131-141 (1999).
2. Grossman, A. D., Genetic networks controlling the initiation of sporulation and the development of genetic competence in Bacillus subtilis. Annu. Rev. Genet., 29, 477-508 (1995).
3. Losick, R., and Pero, J., Cascades of sigma factors. Cell, 25, 582-584 (1981).
4. Tipper, D. J., Johnson, C. W., Ginther, C. L., Leighton, T., and Wittmann, H. G., Erythromycin-resistant mutations in Bacillus subtilis cause temperature-sensitive sporulation. Mol. Gen. Genet., 150, 147-159 (1977).
5. Campbell, K. M., and Chambliss, G. H., Streptomycin-resistant, asporogenous mutant of Bacillus subtilis. Mol. Gen. Genet., 158, 193-200 (1977).
6. Chambliss, G. H., and Legault-Demare, L., Functional modifications of the translational system in Bacillus subtilis during sporulation. J. Bacteriol., 132, 13-22 (1977).
7. Kobayashi, H., Kobayashi, K., and Kobayashi, Y., Isolation and characterization of fusidic acid-resistant, sporulation-defective mutants of Bacillus subtilis. J. Bacteriol., 132, 262-269 (1977).
8. Fortnagel, P., and Freese, E. B., Morphological stages of Bacillus subtilis sporulation and resistance to fusidic acid. J. Gen. Microbiol., 101, 299-306 (1977).
9. Fawcett, P., Eichenberger, P., Losick, R., and Youngman, P., The transcriptional profile of early to middle sporulation in Bacillus subtilis. Proc. Natl. Acad. Sci. USA, 97, 8063-8068 (2000).
10. Kunst, F., Ogasawara, N., Moszer, I., Albertini, A. M., Alloni, G., Azevedo, V., Bertero, M. G., Bessieres, P., Bolotin, A., Borchert, S., Borriss, R., Boursier, L., Brans, A., Braun, M., Brignell, S. C., Bron, S., Brouillet, S., Bruschi, C. V., Caldwell, B., Capuano, V., Carter, N. M., Choi, S.-K., Codani, J.-J., Connerton, I. F., Cummings, N. J., Daniel, R. A., Denizot, F., Devine, K. M., Dusterhoft, A., Ehrlich, S. D., Emmerson, P. T., Entian, K. D., Errington, J., Fabret, C., Ferrari, E., Foulger, D., Fritz, C., Fujita, M., Fujita, Y., Fuma, S., Galizzi, A., Galleron, N., Ghim, S.-Y., Glaser, P., Goffeau, A., Golightly, E. J., Grandi, G., Guiseppi, G., Guy, B. J., Haga, K., Haiech, J., Harwood, C. R., Henaut, A., Hilbert, H., Holsappel, S., Hosono, S., Hullo, M.-F., Itaya, M., Jones, L., Joris, B., Karamata, D., Kasahara, Y., Klaerr-Blanchard, M., Klein, C., Kobayashi, Y., Koetter, P., Koningstein, G., Krogh, S., Kumano, M., Kurita, K., Lapidus, A., Lardinois, S., Lauber, J., Lazarevic, V., Lee, S.-M., Levine, A., Liu, H., Masuda, S., Mauel, C., Medigue, C., Medina, N., Mellado, R. P., Mizuno, M., Moestl, D., Nakai, S., Noback, M., Noone, D., O'Reilly, M., Ogawa, K., Ogiwara, A., Oudega, B., Park, S.-H., Parro, V., Pohl, T. M., Portetelle, D., Porwollik, S., Prescott, A. M., Presecan, E., Pujic, P., Purnelle, B., Rapoport, G., Rey, M., Reynolds, S., Rieger, M., Rivolta, C., Rocha, E., Roche, B., Rose, M., Sadaie, Y., Sato, T., Scanlan, E., Schleich, S., Schroeter, R., Scoffone, F., Sekiguchi, J., Sekowska, A., Seror, S. J., Serror, P., Shin, B.-S., Soldo, B., Sorokin, A., Tacconi, E., Takagi, T., Takahashi, H., Takemaru, K., Takeuchi, M., Tamakoshi, A., Tanaka, T., Terpstra, P., Tognoni, A., Tosato, V., Uchiyama, S., Vandenbol, M., Vannier, F., Vassarotti, A., Viari, A., Wambutt, R., Wedler, E., Wedler, H., Weitzenegger, T., Winters, P., Wipat, A., Yamamoto, H., Yamane, K., Yasumoto, K., Yata, K., Yoshida, K., Yoshikawa, H.-F., Zumstein, E., Yoshikawa, H., and Danchin, A., The complete genome sequence of the Gram-positive bacterium Bacillus subtilis. Nature (London), 390, 249-256 (1997).
11. Kanaya, S., Yamada, Y., Kudo, Y., and Ikemura, T., Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis. Gene, 238, 143-155 (1999).
12. Aoki, H., Dekany, K., Adams, S. L., and Ganoza, M. C., The gene encoding the elongation factor P protein is essential for viability and is required for protein synthesis. J. Biol. Chem., 272, 32254-32259 (1997).
13. Hirashima, A., and Kaji, A., Role of elongation factor G and a protein factor on the release of ribosomes from messenger ribonucleic acid. J. Biol. Chem., 248, 7580-7587 (1973).
14. Moriya, S., Tsujikawa, E., Hassan, A. K., Asai, K., Kodama, T., and Ogasawara, N., A Bacillus subtilis gene-encoding protein homologous to eukaryotic SMC motor protein is necessary for chromosome partition. Mol. Microbiol., 29, 179-187 (1998).
15. Leighton, T. J., and Doi, R. H., The stability of messenger ribonucleic acid during sporulation in Bacillus subtilis. J. Biol. Chem., 246, 3189-3195 (1971).
16. H protein, in Bacillus subtilis at elevated temperatures. Mol. Microbiol., 29, 505-513 (1998).
17. Ohashi, Y., Chijiiwa, Y., Suzuki, K., Takahashi, K., Nanamiya, H., Hosoya, Y., Ochi, K., and Kawamura, F., The lethal effect of a benzamide derivative, 3-methoxybenzamide, can be suppressed by mutations within a cell division gene, ftsZ, in Bacillus subtilis. J. Bacteriol., 181, 1348-1351 (1999).
18. H at the onset of sporulation in Bacillus subtilis. J. Bacteriol., 177, 6679-6683 (1995).
19. Li, X., Lindahl, L., Sha, Y., and Zengel, J. M., Analysis of the Bacillus subtilis S10 ribosomal protein gene cluster identifies two promoters that may be responsible for transcription of the entire 15-kilobase S10-spc-α cluster. J. Bacteriol., 179, 7046-7054 (1997).
20. Hussey, C., Losick, R., and Sonenshein, A. L., Ribosomal RNA synthesis is turned off during sporulation of Bacillus subtilis. J. Mol. Biol., 57, 59-70 (1971).
21. Hussey, C., Pero, J., Shorenstein, R. G., and Losick, R., In vitro synthesis of ribosomal RNA by Bacillus subtilis RNA polymerase. Proc. Natl. Acad. Sci. USA, 69, 407-411 (1972).
22. Huang, J., Lih, C. J., Pan, K. H., and Cohen, S. N., Global analysis of growth phase responsive gene expression and regulation of antibiotic biosynthetic pathways in Streptomyces coelicolor using DNA microarrays. Genes. Dev., 15, 3183-3192 (2001).
23. Ohashi, Y., Ohshima, H., Tsuge, K., and Itaya, M., Far different levels of gene expression provided by an oriented cloning ststem in Bacillus subtilis and Escherichia coli. FEMS Microbiol. Lett., 221, 125-130 (2003).
24. Hirochika, H., and Kobayashi, Y., Suppression of temperature-sensitive sporulation of a Bacillus subtilis elongation factor G mutant by RNA polymerase mutations. J. Bacteriol., 136, 883-893 (1978).
25. 32). Mol. Gen. Genet., 212, 166-171 (1988).
26. Wower, I. K., Wower, J., and Zimmermann, R. A., Ribosomal protein L27 participates in both 50S subunit assembly and the peptidyl transferase reaction. J. Biol. Chem., 273, 19847-19852 (1998).
27. Maguire, B. A., and Wild, D. G., Mutations in the rpmBG operon of Escherichia coli that affect ribosome assembly. J. Bacteriol., 179, 2486-2493 (1997).
28. Jeong, S. M., Yoshikawa, H., and Takahashi, H., Isolation and characterization of the secE homologue gene of Bacillus subtilis. Mol. Microbiol., 10, 133-142 (1993).
29. H factor. J. Bacteriol., 173, 521-529 (1991).
30. Freese, E., and Heinz, J., Metabolic and genetic control of bacterial sporulation. In "The Bacterial Spores" vol. 2, eds. Hurst, A., Gould, G. W., and Dring, J., Academic Press, London, pp. 101-172 (1984).
31. Farwell, M. A., Roberts, M. W., and Rabinowitz, J. C., The effect of ribosomal protein S1 from Escherichia coli and Micrococcus luteus on protein synthesis in vitro by E. coli and Bacillus subtilis. Mol. Microbiol., 6, 3375-3383 (1992).
32. Isono, K., and Isono, S., Lack of ribosomal protein S1 in Bacillus stearothermophilus. Proc. Natl. Acad. Sci. USA, 73, 767-770 (1976).
33. Sorokin, A., Serror, P., Pujic, P., Azevedo, V., and Ehrlich, S. D., The Bacillus subtilis chromosome region encoding homologues of the Escherichia coli mssA and rpsA gene products. Microbiology, 141, 311-319 (1995).
34. Grentzmann, G., Kelly, P. J., Laalami, S., Shuda, M., Firpo, M. A., Cenatiempo, Y., and Kaji, A., Release factor RF-3 GTPase activity acts in disassembly of the ribosome termination complex. RNA, 4, 973-983 (1998).
35. Pavlov, M. Y., Freistroffer, D. V., MacDougall, J., Buckingham, R. H., and Ehrenberg, M., Fast recycling of Escherichia coli ribosomes requires both ribosome recycling factor (RRF) and release factor RF3. EMBO J., 16, 4134-4141 (1997).
36. Kobayashi, K., Ehrlich, S. D., Albertini, A., Amati, G., Andersen, K. K., Arnaud, M., Asai, K., Ahikaga, S., Aymerich, S., Bessieres, P., Boland, F., Brignell, S. C., Bron, S., Bunai, K., Chapuis, J., Christiansen, L. C., Danchin, A., Debarbouille, M., Dervyn, E., Deuerling, E., Devine, K., Devine, S. K., Dreesen, O., Errington, J., Fillinger, S., Foster, S. J., Fujita, Y., Galizzi, A., Gardan, R., Eschevins, C., Fukushima, T., Haga, K., Harwood, C. R., Hecker, M., Hosoya, D., Hullo, M. F., Kakeshita, H., Karamata, D., Kasahara, Y., Kawamura, F., Koga, K., Koski, P., Kuwana, R., Imamura, D., Ishimaru, M., Ishikawa, S., Ishio, I., LeCoq, D., Masson, A., Mauel, C., Meima, R., Mellado, R. P., Moir, A., Moriya, S., Nagakawa, E., Nanamiya, H., Nakai, S., Nygaard, P., Ogura, M., Ohanan, T., O'Reilly, M., O'Rourke, M., Pragai, Z., Pooley, H. M., Rapoport, G., Rawlins, J. P., Rivas, L. A., Rivolta, C., Sadaie, A., Sadaie, Y., Sarvas, M., Sato, T., Saxild, H. H., Scanlan, E., Schumann, W., Seegers, J. F. M. L., Sekiguchi, J., Sekowska, A., Seror, S. J., Simon, M., Stragier, P., Studer, R., Takamatsu, H., Tanaka, T., Takeuchi, M., Thomaides, H. B., Vagner, V., van Dijl, J. M., Watabe, K., Wipat, A., Yamamoto, H., Yamamoto, M., Yamamoto, Y., Yamane, K., Yata, K., Yoshida, K., Yoshikawa, H., Zuber, U., and Ogasawara, N., Essential Bacillus subtilis genes. Proc. Natl. Acad. Sci. USA, 100, 4678-4683 (2003).
37. Janosi, L., Ricker, R., and Kaji, A., Dual functions of ribosome recycling factor in protein biosynthesis: disassembling the termination complex and preventing translational errors. Biochimie, 78, 959-969 (1996).