-
1
-
-
62649161589
-
Biologically inspired synthetic enzymes made from DNA
-
Schlosser, K. and Li, Y. (2009) Biologically inspired synthetic enzymes made from DNA. Chem. Biol., 16, 311-322.
-
(2009)
Chem. Biol.
, vol.16
, pp. 311-322
-
-
Schlosser, K.1
Li, Y.2
-
2
-
-
77957362844
-
DNA as a versatile chemical component for catalysis, encoding, and stereocontrol
-
Silverman, S. K. (2010) DNA as a versatile chemical component for catalysis, encoding, and stereocontrol. Angew. Chem. Int. Ed., 49, 7180-7201.
-
(2010)
Angew. Chem. Int. Ed.
, vol.49
, pp. 7180-7201
-
-
Silverman, S.K.1
-
3
-
-
0028675028
-
A DNA enzyme that cleaves RNA
-
Breaker, R. R. and Joyce, G. F. (1994) A DNA enzyme that cleaves RNA. Chem. Biol., 1, 223-229. (Pubitemid 124002020)
-
(1994)
Chemistry and Biology
, vol.1
, Issue.4
, pp. 223-229
-
-
Breaker, R.R.1
Joyce, G.F.2
-
4
-
-
28544448500
-
In vitro selection, characterization, and application of deoxyribozymes that cleave RNA
-
DOI 10.1093/nar/gki930
-
Silverman, S. K. (2005) In vitro selection, characterization, and application of deoxyribozymes that cleave RNA. Nucleic Acids Res., 33, 6151-6163. (Pubitemid 41742553)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.19
, pp. 6151-6163
-
-
Silverman, S.K.1
-
5
-
-
77951713609
-
A versatile endoribonuclease mimic made of DNA: Characteristics and applications of the 8-17 RNA-cleaving DNAzyme
-
Schlosser, K. and Li, Y. (2010) A versatile endoribonuclease mimic made of DNA: characteristics and applications of the 8-17 RNA-cleaving DNAzyme. ChemBioChem, 11, 866-879.
-
(2010)
ChemBioChem
, vol.11
, pp. 866-879
-
-
Schlosser, K.1
Li, Y.2
-
6
-
-
3042732096
-
Directed evolution of nucleic acid enzymes
-
DOI 10.1146/annurev.biochem.73.011303.073717
-
Joyce, G. F. (2004) Directed evolution of nucleic acid enzymes. Annu. Rev. Biochem., 73, 791-836. (Pubitemid 39050386)
-
(2004)
Annual Review of Biochemistry
, vol.73
, pp. 791-836
-
-
Joyce, G.F.1
-
7
-
-
34548311711
-
Forty years of in vitro evolution
-
DOI 10.1002/anie.200701369
-
Joyce, G. F. (2007) Forty years of in vitro evolution. Angew. Chem. Int. Ed., 46, 6420-6436. (Pubitemid 47340165)
-
(2007)
Angewandte Chemie - International Edition
, vol.46
, Issue.34
, pp. 6420-6436
-
-
Joyce, G.F.1
-
8
-
-
47949085051
-
Catalytic DNA (deoxyribozymes) for synthetic applications-current abilities and future prospects
-
Silverman, S. K. (2008) Catalytic DNA (deoxyribozymes) for synthetic applications-current abilities and future prospects. Chem. Commun., 3467-3485.
-
(2008)
Chem. Commun.
, pp. 3467-3485
-
-
Silverman, S.K.1
-
9
-
-
70349327390
-
DNA-catalyzed sequence-specific hydrolysis of DNA
-
Chandra, M., Sachdeva, A. and Silverman, S. K. (2009) DNA-catalyzed sequence-specific hydrolysis of DNA. Nat. Chem. Biol., 5, 718-720.
-
(2009)
Nat. Chem. Biol.
, vol.5
, pp. 718-720
-
-
Chandra, M.1
Sachdeva, A.2
Silverman, S.K.3
-
10
-
-
70349330989
-
DNA-catalyzed hydrolysis of DNA phosphodiesters
-
Fekry, M. I. and Gates, K. S. (2009) DNA-catalyzed hydrolysis of DNA phosphodiesters. Nat. Chem. Biol., 5, 710-711.
-
(2009)
Nat. Chem. Biol.
, vol.5
, pp. 710-711
-
-
Fekry, M.I.1
Gates, K.S.2
-
11
-
-
0030482173
-
In vitro selection of self-cleaving DNAs
-
Carmi, N., Shultz, L. A. and Breaker, R. R. (1996) In vitro selection of self-cleaving DNAs. Chem. Biol., 3, 1039-1046. (Pubitemid 27058827)
-
(1996)
Chemistry and Biology
, vol.3
, Issue.12
, pp. 1039-1046
-
-
Carmi, N.1
Shultz, L.A.2
Breaker, R.R.3
-
12
-
-
0032478096
-
Cleaving DNA with DNA
-
DOI 10.1073/pnas.95.5.2233
-
Carmi, N., Balkhi, S. R. and Breaker, R. R. (1998) Cleaving DNA with DNA. Proc. Natl. Acad. Sci. USA, 95, 2233-2237. (Pubitemid 28145924)
-
(1998)
Proceedings of the National Academy of Sciences of the United States of America
, vol.95
, Issue.5
, pp. 2233-2237
-
-
Carmi, N.1
Balkhi, S.R.2
Breaker, R.R.3
-
13
-
-
0034847558
-
Characterization of a DNA-cleaving deoxyribozyme
-
DOI 10.1016/S0968-0896(01)00035-9, PII S0968089601000359
-
Carmi, N. and Breaker, R. R. (2001) Characterization of a DNA-cleaving deoxyribozyme. Bioorg. Med. Chem., 9, 2589-2600. (Pubitemid 32824162)
-
(2001)
Bioorganic and Medicinal Chemistry
, vol.9
, Issue.10
, pp. 2589-2600
-
-
Carmi, N.1
Breaker, R.R.2
-
14
-
-
78149332105
-
Functional compromises among pH tolerance, site specificity, and sequence tolerance for a DNA-hydrolyzing deoxyribozyme
-
Xiao, Y., Chandra, M. and Silverman, S. K. (2010) Functional compromises among pH tolerance, site specificity, and sequence tolerance for a DNA-hydrolyzing deoxyribozyme. Biochemistry, 49, 9630-9637.
-
(2010)
Biochemistry
, vol.49
, pp. 9630-9637
-
-
Xiao, Y.1
Chandra, M.2
Silverman, S.K.3
-
15
-
-
79251530794
-
Merely two mutations switch a DNA-hydrolyzing deoxyribozyme from heterobimetallic (Zn2 +Mn2+) to monometallic (Zn2+-only) behavior
-
Xiao, Y., Allen, E. C. and Silverman, S. K. (2011) Merely two mutations switch a DNA-hydrolyzing deoxyribozyme from heterobimetallic (Zn2 +Mn2+) to monometallic (Zn2+-only) behavior. Chem. Commun., 47, 1749-1751.
-
(2011)
Chem. Commun.
, vol.47
, pp. 1749-1751
-
-
Xiao, Y.1
Allen, E.C.2
Silverman, S.K.3
-
16
-
-
0000699427
-
Metalactivated hydrolytic cleavage of DNA
-
Basile, L. A., Raphael, A. L. and Barton, J. K. (1987) Metalactivated hydrolytic cleavage of DNA. J. Am. Chem. Soc., 109, 7550-7551.
-
(1987)
J. Am. Chem. Soc.
, vol.109
, pp. 7550-7551
-
-
Basile, L.A.1
Raphael, A.L.2
Barton, J.K.3
-
17
-
-
0030809044
-
Cobalt(III) polyamine complexes as catalysts for the hydrolysis of phosphate esters and of DNA. A measurable 10 million-fold rate increase
-
DOI 10.1021/ja964319o
-
Hettich, R. and Schneider, H.-J. (1997) Cobalt(III) polyamine complexes as catalysts for the hydrolysis of phosphate esters and of DNA. A measurable 10 million-fold rate increase. J. Am. Chem. Soc., 119, 5638-5647. (Pubitemid 27321423)
-
(1997)
Journal of the American Chemical Society
, vol.119
, Issue.24
, pp. 5638-5647
-
-
Hettich, R.1
Schneider, H.-J.2
-
18
-
-
0034852790
-
Catalytic hydrolysis of DNA by metal ions and complexes
-
DOI 10.1007/s007750100209
-
Sreedhara, A. and Cowan, J. A. (2001) Catalytic hydrolysis of DNA by metal ions and complexes. J. Biol. Inorg. Chem., 6, 337-347. (Pubitemid 32822126)
-
(2001)
Journal of Biological Inorganic Chemistry
, vol.6
, Issue.4
, pp. 337-347
-
-
Sreedhara, A.1
Cowan, J.A.2
-
19
-
-
0035820014
-
Double-strand hydrolysis of plasmid DNA by dicerium complexes at 37°C
-
DOI 10.1021/ja0010103
-
Branum, M. E., Tipton, A. K., Zhu, S. and Que, L. Jr (2001) Double-strand hydrolysis of plasmid DNA by dicerium complexes at 37°C. J. Am. Chem. Soc., 123, 1898-1904. (Pubitemid 32200008)
-
(2001)
Journal of the American Chemical Society
, vol.123
, Issue.9
, pp. 1898-1904
-
-
Branum, M.E.1
Tipton, A.K.2
Zhu, S.3
Que Jr., L.4
-
20
-
-
34548204760
-
Zinc(II) complexes as hydrolytic catalysts of phosphate diester cleavage: From model substrates to nucleic acids
-
DOI 10.1039/b703556j
-
Mancin, F. and Tecilla, P. (2007) Zinc(II) complexes as hydrolytic catalysts of phosphate diester cleavage: from model substrates to nucleic acids. New J. Chem., 31, 800-817. (Pubitemid 47324765)
-
(2007)
New Journal of Chemistry
, vol.31
, Issue.6
, pp. 800-817
-
-
Mancin, F.1
Tecilla, P.2
-
21
-
-
38749116584
-
Hydrolytic DNA cleavage by non-lanthanide metal complexes
-
Shell, T. A. and Mohler, D. L. (2007) Hydrolytic DNA cleavage by non-lanthanide metal complexes. Curr. Org. Chem., 11, 1525-1542.
-
(2007)
Curr. Org. Chem.
, vol.11
, pp. 1525-1542
-
-
Shell, T.A.1
Mohler, D.L.2
-
22
-
-
64349108750
-
Mononuclear Cu(II)-phenolate bioinspired complex is catalytically promiscuous: Phosphodiester and peptide amide bond cleavage
-
Bof Oliveira, M. C., Mazera, D., Scarpellini, M., Cardoso Severino, P., Neves, A. and Terenzi, H. (2009) Mononuclear Cu(II)-phenolate bioinspired complex is catalytically promiscuous: phosphodiester and peptide amide bond cleavage. Inorg Chem, 48, 2711-2713.
-
(2009)
Inorg Chem
, vol.48
, pp. 2711-2713
-
-
Bof Oliveira, M.C.1
Mazera, D.2
Scarpellini, M.3
Cardoso Severino, P.4
Neves, A.5
Terenzi, H.6
-
23
-
-
79955960575
-
Cleavage of phosphodiesters and of DNA by a bis(guanidinium)naphthol acting as a metal-free anion receptor
-
Ullrich, S., Nazir, Z., Busing, A., Scheffer, U., Wirth, D., Bats, J. W., Durner, G. and Gobel, M. W. (2011) Cleavage of phosphodiesters and of DNA by a bis(guanidinium)naphthol acting as a metal-free anion receptor. ChemBioChem, 12, 1223-1229.
-
(2011)
ChemBioChem
, vol.12
, pp. 1223-1229
-
-
Ullrich, S.1
Nazir, Z.2
Busing, A.3
Scheffer, U.4
Wirth, D.5
Bats, J.W.6
Durner, G.7
Gobel, M.W.8
-
25
-
-
1142281951
-
Dinucleotide junction cleavage versatility of 8-17 deoxyribozyme
-
DOI 10.1016/S1074-5521(03)00284-9
-
Cruz, R. P. G., Withers, J. B. and Li, Y. (2004) Dinucleotide junction cleavage versatility of 8-17 deoxyribozyme. Chem. Biol., 11, 57-67. (Pubitemid 38203990)
-
(2004)
Chemistry and Biology
, vol.11
, Issue.1
, pp. 57-67
-
-
Cruz, R.P.G.1
Withers, J.B.2
Li, Y.3
-
26
-
-
77957376895
-
Use of deoxyribozymes in RNA research
-
Silverman, S. K. and Baum, D. A. (2009) Use of deoxyribozymes in RNA research. Methods Enzymol., 469, 95-117.
-
(2009)
Methods Enzymol.
, vol.469
, pp. 95-117
-
-
Silverman, S.K.1
Baum, D.A.2
-
27
-
-
33645212804
-
The time required for water attack at the phosphorus atom of simple phosphodiesters and of DNA
-
Schroeder, G. K., Lad, C., Wyman, P., Williams, N. H. and Wolfenden, R. (2006) The time required for water attack at the phosphorus atom of simple phosphodiesters and of DNA. Proc. Natl Acad. Sci. USA, 103, 4052-4055.
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 4052-4055
-
-
Schroeder, G.K.1
Lad, C.2
Wyman, P.3
Williams, N.H.4
Wolfenden, R.5
-
28
-
-
0033575087
-
Kinetics of RNA degradation by specific base catalysis of transesterification involving the 20-hydroxyl group
-
Li, Y. and Breaker, R. R. (1999) Kinetics of RNA degradation by specific base catalysis of transesterification involving the 20-hydroxyl group. J. Am. Chem. Soc., 121, 5364-5372.
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 5364-5372
-
-
Li, Y.1
Breaker, R.R.2
-
29
-
-
0037420377
-
Deoxyribozymes with 2′-5′ RNA ligase activity
-
DOI 10.1021/ja028774y
-
Flynn-Charlebois, A., Wang, Y., Prior, T. K., Rashid, I., Hoadley, K. A., Coppins, R. L., Wolf, A. C. and Silverman, S. K. (2003) Deoxyribozymes with 20-50 RNA ligase activity. J. Am. Chem. Soc., 125, 2444-2454. (Pubitemid 36512231)
-
(2003)
Journal of the American Chemical Society
, vol.125
, Issue.9
, pp. 2444-2454
-
-
Flynn-Charlebois, A.1
Wang, Y.2
Prior, T.K.3
Rashid, I.4
Hoadley, K.A.5
Coppins, R.L.6
Wolf, A.C.7
Silverman, S.K.8
-
30
-
-
56349102235
-
Controlling regioselectivity and site-selectivity in RNA ligation by Zn2+-dependent deoxyribozymes that use 2' 3'-cyclic phosphate RNA substrates
-
Kost, D. M., Gerdt, J. P., Pradeepkumar, P. I. and Silverman, S. K. (2008) Controlling regioselectivity and site-selectivity in RNA ligation by Zn2+-dependent deoxyribozymes that use 2', 3'-cyclic phosphate RNA substrates. Org. Biomol. Chem., 6, 4391-4398.
-
(2008)
Org. Biomol. Chem.
, vol.6
, pp. 4391-4398
-
-
Kost, D.M.1
Gerdt, J.P.2
Pradeepkumar, P.I.3
Silverman, S.K.4
-
31
-
-
0037617490
-
In vitro evolution of an RNA-cleaving DNA enzyme into an RNA ligase switches the selectivity from 3′-5′ to 2′-5′
-
DOI 10.1021/ja0340331
-
Flynn-Charlebois, A., Prior, T. K., Hoadley, K. A. and Silverman, S. K. (2003) In vitro evolution of an RNA-cleaving DNA enzyme into an RNA ligase switches the selectivity from 30-50 to 20-50. J. Am. Chem. Soc., 125, 5346-5350. (Pubitemid 36582743)
-
(2003)
Journal of the American Chemical Society
, vol.125
, Issue.18
, pp. 5346-5350
-
-
Flynn-Charlebois, A.1
Prior, T.K.2
Hoadley, K.A.3
Silverman, S.K.4
-
32
-
-
77951731728
-
Deoxyribozymes: Selection design and serendipity in the development of DNA catalysts
-
Silverman, S. K. (2009) Deoxyribozymes: selection design and serendipity in the development of DNA catalysts. Acc. Chem. Res., 42, 1521-1531.
-
(2009)
Acc. Chem. Res.
, vol.42
, pp. 1521-1531
-
-
Silverman, S.K.1
-
33
-
-
0034608808
-
A DNA enzyme with N-glycosylase activity
-
DOI 10.1073/pnas.97.14.7802
-
Sheppard, T. L., Ordoukhanian, P. and Joyce, G. F. (2000) A DNA enzyme with N-glycosylase activity. Proc. Natl Acad. Sci. USA, 97, 7802-7807. (Pubitemid 30460728)
-
(2000)
Proceedings of the National Academy of Sciences of the United States of America
, vol.97
, Issue.14
, pp. 7802-7807
-
-
Sheppard, T.L.1
Ordoukhanian, P.2
Joyce, G.F.3
-
34
-
-
77957884451
-
Template-directed ligation of tethered mononucleotides by T4 DNA ligase for kinase ribozyme selection
-
Nickens, D. G., Bardiya, N., Patterson, J. T. and Burke, D. H. (2010) Template-directed ligation of tethered mononucleotides by T4 DNA ligase for kinase ribozyme selection. PLoS ONE, 5, e12368.
-
(2010)
PLoS ONE
, vol.5
-
-
Nickens, D.G.1
Bardiya, N.2
Patterson, J.T.3
Burke, D.H.4
-
35
-
-
0032952507
-
Crystal structure of an 82-nucleotide RNA-DNA complex formed by the 10- 23 DNA enzyme
-
DOI 10.1038/5839
-
Nowakowski, J., Shim, P. J., Prasad, G. S., Stout, C. D. and Joyce, G. F. (1999) Crystal structure of an 82-nucleotide RNA-DNA complex formed by the 10-23 DNA enzyme. Nat. Struct. Biol., 6, 151-156. (Pubitemid 29069778)
-
(1999)
Nature Structural Biology
, vol.6
, Issue.2
, pp. 151-156
-
-
Nowakowski, J.1
Shim, P.J.2
Prasad, G.S.3
Stout, C.D.4
Joyce, G.F.5
-
36
-
-
69349104918
-
Strand invasion of extended mixed-sequence B-DNA by gPNAs
-
He, G., Rapireddy, S., Bahal, R., Sahu, B. and Ly, D. H. (2009) Strand invasion of extended, mixed-sequence B-DNA by gPNAs. J. Am. Chem. Soc., 131, 12088-12090.
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 12088-12090
-
-
He, G.1
Rapireddy, S.2
Bahal, R.3
Sahu, B.4
Ly, D.H.5
-
37
-
-
60849110279
-
Strand invasion of conventional PNA to arbitrary sequence in DNA assisted by single-stranded DNA binding protein
-
Ishizuka, T., Otani, K., Sumaoka, J. and Komiyama, M. (2009) Strand invasion of conventional PNA to arbitrary sequence in DNA assisted by single-stranded DNA binding protein. Chem. Commun., 1225-1227.
-
(2009)
Chem. Commun.
, pp. 1225-1227
-
-
Ishizuka, T.1
Otani, K.2
Sumaoka, J.3
Komiyama, M.4
-
38
-
-
70350535027
-
SSB-assisted duplex invasion of preorganized PNA into double-stranded DNA
-
Ishizuka, T., Tedeschi, T., Corradini, R., Komiyama, M., Sforza, S. and Marchelli, R. (2009) SSB-assisted duplex invasion of preorganized PNA into double-stranded DNA. ChemBioChem, 10, 2607-2612.
-
(2009)
ChemBioChem
, vol.10
, pp. 2607-2612
-
-
Ishizuka, T.1
Tedeschi, T.2
Corradini, R.3
Komiyama, M.4
Sforza, S.5
Marchelli, R.6
-
39
-
-
57149107379
-
RecA-mediated strand invasion of DNA by oligonucleotides substituted with 2-aminoadenine and 2-thiothymine
-
Lahoud, G., Arar, K., Hou, Y. M. and Gamper, H. (2008) RecA-mediated strand invasion of DNA by oligonucleotides substituted with 2-aminoadenine and 2-thiothymine. Nucleic Acids Res., 36, 6806-6815.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 6806-6815
-
-
Lahoud, G.1
Arar, K.2
Hou, Y.M.3
Gamper, H.4
|