-
1
-
-
77957866241
-
-
In: Ribas de Pouplana L, ed. The Genetic Code and the Origin of Life
-
Burke DH (2004) RNA-catalyzed genetics. In: Ribas de Pouplana L, ed. The Genetic Code and the Origin of Life.
-
(2004)
RNA-catalyzed Genetics
-
-
Burke, D.H.1
-
2
-
-
3042732096
-
Directed evolution of nucleic acid enzymes
-
Joyce GF (2004) Directed evolution of nucleic acid enzymes. Annu Rev Biochem 73: 791-836.
-
(2004)
Annu Rev Biochem
, vol.73
, pp. 791-836
-
-
Joyce, G.F.1
-
3
-
-
0035368080
-
Artificial ribozymes and deoxyribozymes
-
Jaschke A (2001) Artificial ribozymes and deoxyribozymes. Curr Opin Struct Biol 11: 321-326.
-
(2001)
Curr Opin Struct Biol
, vol.11
, pp. 321-326
-
-
Jaschke, A.1
-
4
-
-
34249672905
-
Ribozyme catalysis of metabolism in the RNA world
-
Chen X, Li N, Ellington A (2007) Ribozyme catalysis of metabolism in the RNA world. Chem Biodivers 4: 633-655.
-
(2007)
Chem Biodivers
, vol.4
, pp. 633-655
-
-
Chen, X.1
Li, N.2
Ellington, A.3
-
5
-
-
0033102314
-
A small catalytic RNA motif with Diels-Alderase activity
-
Seelig B, Jäschke A (1999) A small catalytic RNA motif with Diels-Alderase activity. Chem Biol 6: 167-176.
-
(1999)
Chem Biol
, vol.6
, pp. 167-176
-
-
Seelig, B.1
Jäschke, A.2
-
6
-
-
77957886822
-
Convergent donor and acceptor substrate utilization among kinase ribozymes
-
in press
-
Biondi E, Nickens DG, Warren S, Saran D, Burke DH (2010) Convergent donor and acceptor substrate utilization among kinase ribozymes. Nucleic Acids Research, in press.
-
(2010)
Nucleic Acids Research
-
-
Biondi, E.1
Nickens, D.G.2
Warren, S.3
Saran, D.4
Burke, D.H.5
-
7
-
-
27744513650
-
A trans acting ribozyme that phosphorylates exogenous RNA
-
Saran D, Nickens D, Burke D (2005) A trans acting ribozyme that phosphorylates exogenous RNA. Biochemistry 44: 15007-15016.
-
(2005)
Biochemistry
, vol.44
, pp. 15007-15016
-
-
Saran, D.1
Nickens, D.2
Burke, D.3
-
8
-
-
4143134146
-
A kinetic study of the growth of fatty acid vesicles
-
Chen I, Szostak J (2004) A kinetic study of the growth of fatty acid vesicles. Biophys J 87: 988-998.
-
(2004)
Biophys J
, vol.87
, pp. 988-998
-
-
Chen, I.1
Szostak, J.2
-
9
-
-
0142147270
-
Experimental models of primitive cellular compartments: Encapsulation, growth, and division
-
Hanczyc M, Fujikawa S, Szostak J (2003) Experimental models of primitive cellular compartments: encapsulation, growth, and division. Science 302: 618-622.
-
(2003)
Science
, vol.302
, pp. 618-622
-
-
Hanczyc, M.1
Fujikawa, S.2
Szostak, J.3
-
10
-
-
0346728686
-
Tris(2-carboxyethyl)phosphine stabilization of RNA: Comparison with dithiothreitol for use with nucleic acid and thiophosphoryl chemistry
-
Rhee S, Burke D (2004) Tris(2-carboxyethyl)phosphine stabilization of RNA: comparison with dithiothreitol for use with nucleic acid and thiophosphoryl chemistry. Anal Biochem 325: 137-143.
-
(2004)
Anal Biochem
, vol.325
, pp. 137-143
-
-
Rhee, S.1
Burke, D.2
-
11
-
-
33845248890
-
Topological rearrangement yields structural stabilization and interhelical distance constraints in the Kin.46 self-phosphorylating ribozyme
-
Cho B, Burke D (2006) Topological rearrangement yields structural stabilization and interhelical distance constraints in the Kin.46 self-phosphorylating ribozyme. RNA 12: 2118-2125.
-
(2006)
RNA
, vol.12
, pp. 2118-2125
-
-
Cho, B.1
Burke, D.2
-
12
-
-
34247589080
-
Proximity of both ends of stems P3 and P4 of self-kinasing RNA by ATP
-
Cho B (2007) Proximity of both ends of stems P3 and P4 of self-kinasing RNA by ATP. Bull Korean Chem Soc 28: 689-690.
-
(2007)
Bull Korean Chem Soc
, vol.28
, pp. 689-690
-
-
Cho, B.1
-
14
-
-
0028875594
-
Kinetic and thermodynamic characterization of the reaction catalyzed by a polynucleotide kinase ribozyme
-
Lorsch JR, Szostak JW (1995) Kinetic and thermodynamic characterization of the reaction catalyzed by a polynucleotide kinase ribozyme. Biochem 34: 15315-15327.
-
(1995)
Biochem
, vol.34
, pp. 15315-15327
-
-
Lorsch, J.R.1
Szostak, J.W.2
-
15
-
-
0033019927
-
Phosphorylating DNA with DNA. Proc Natl Acad Sci
-
Li Y, Breaker RR (1999) Phosphorylating DNA with DNA. Proc Natl Acad Sci, U S A 96: 2746-2751.
-
(1999)
U S A
, vol.96
, pp. 2746-2751
-
-
Li, Y.1
Breaker, R.R.2
-
16
-
-
0036235747
-
Sequence diversity, metal specificity, and catalytic proficiency of metal-dependent phosphorylating DNA enzymes
-
Wang W, Billen LP, Li Y (2002) Sequence diversity, metal specificity, and catalytic proficiency of metal-dependent phosphorylating DNA enzymes. Chem & Biol 9: 507-517.
-
(2002)
Chem & Biol
, vol.9
, pp. 507-517
-
-
Wang, W.1
Billen, L.P.2
Li, Y.3
-
17
-
-
33745316842
-
Multiple-turnover thio-ATP hydrolase and phospho-enzyme intermediate formation activities catalyzed by an RNA enzyme
-
Saran D, Held D, Burke D (2006) Multiple-turnover thio-ATP hydrolase and phospho-enzyme intermediate formation activities catalyzed by an RNA enzyme. Nuc Acids Res 34: 3201-3208.
-
(2006)
Nuc Acids Res
, vol.34
, pp. 3201-3208
-
-
Saran, D.1
Held, D.2
Burke, D.3
-
18
-
-
32644440905
-
New catalytic structures from an existing ribozyme
-
Curtis E, Bartel D (2005) New catalytic structures from an existing ribozyme. Nat Struct Mol Biol 12: 994-1000.
-
(2005)
Nat Struct Mol Biol
, vol.12
, pp. 994-1000
-
-
Curtis, E.1
Bartel, D.2
-
19
-
-
0034327406
-
Structural and mechanistic conservation in DNA ligases
-
Doherty A, Suh S (2000) Structural and mechanistic conservation in DNA ligases. Nuc Acids Res 28: 4051-4058.
-
(2000)
Nuc Acids Res
, vol.28
, pp. 4051-4058
-
-
Doherty, A.1
Suh, S.2
-
20
-
-
0016273515
-
DNA ligase: Structure, mechanism, and function
-
Lehman IR (1974) DNA ligase: structure, mechanism, and function. Science 186: 790-797.
-
(1974)
Science
, vol.186
, pp. 790-797
-
-
Lehman, I.R.1
-
21
-
-
0026680843
-
Site-specific modification of pre-mRNA: The 29-hydroxyl groups at the splice sites
-
Moore M, Sharp P (1992) Site-specific modification of pre-mRNA: the 29-hydroxyl groups at the splice sites. Science 256: 992-997.
-
(1992)
Science
, vol.256
, pp. 992-997
-
-
Moore, M.1
Sharp, P.2
-
22
-
-
0037563785
-
Canoncal nucleosides can be utilized by T4 DNA ligase as universal template bases at ligation junctions
-
Alexander RC, Johnson AK, Thorpe JA, Gevedon T, Testa SM (2003) Canoncal nucleosides can be utilized by T4 DNA ligase as universal template bases at ligation junctions. Nucleic Acids Research 31: 3208-3216.
-
(2003)
Nucleic Acids Research
, vol.31
, pp. 3208-3216
-
-
Alexander, R.C.1
Johnson, A.K.2
Thorpe, J.A.3
Gevedon, T.4
Testa, S.M.5
-
23
-
-
4344569343
-
DNA ligases ensure fidelity by interrogating minor groove contacts
-
Liu P, Burdzy A, Sowers LC (2004) DNA ligases ensure fidelity by interrogating minor groove contacts. Nucleic Acids Research 32: 4503-4511.
-
(2004)
Nucleic Acids Research
, vol.32
, pp. 4503-4511
-
-
Liu, P.1
Burdzy, A.2
Sowers, L.C.3
-
24
-
-
0031054449
-
Characterization of an ATP-dependent DNA ligase encoded by Chlorella virus PBCV-1
-
Ho C, Van Etten J, Shuman S (1997) Characterization of an ATP-dependent DNA ligase encoded by Chlorella virus PBCV-1. J Virol 71: 1931-1937.
-
(1997)
J Virol
, vol.71
, pp. 1931-1937
-
-
Ho, C.1
van Etten, J.2
Shuman, S.3
-
25
-
-
0033199455
-
Melting studies of short DNA hairpins containing the universal base 5-nitroindole
-
Vallone P, Benight A (1999) Melting studies of short DNA hairpins containing the universal base 5-nitroindole. Nuc Acids Res 27: 3589-3596.
-
(1999)
Nuc Acids Res
, vol.27
, pp. 3589-3596
-
-
Vallone, P.1
Benight, A.2
-
26
-
-
0029036729
-
3-Nitropyrrole and 5-nitroindole as universal bases in primers for DNA sequencing and PCR
-
Loakes D, Brown D, Linde S, Hill F (1995) 3-Nitropyrrole and 5-nitroindole as universal bases in primers for DNA sequencing and PCR. Nuc Acids Res 23: 2361-2366.
-
(1995)
Nuc Acids Res
, vol.23
, pp. 2361-2366
-
-
Loakes, D.1
Brown, D.2
Linde, S.3
Hill, F.4
-
27
-
-
0027984280
-
5-Nitroindole as an universal base analogue
-
Loakes D, Brown D (1994) 5-Nitroindole as an universal base analogue. Nuc Acids Res 22.
-
(1994)
Nuc Acids Res
, vol.22
-
-
Loakes, D.1
Brown, D.2
-
28
-
-
0032533787
-
The use of tailed octamer primers for cycle sequencing
-
Ball S, Reeve M, Robinson P, Hill F, Brown D, et al. (1998) The use of tailed octamer primers for cycle sequencing. Nuc Acids Res 26: 5225-5227.
-
(1998)
Nuc Acids Res
, vol.26
, pp. 5225-5227
-
-
Ball, S.1
Reeve, M.2
Robinson, P.3
Hill, F.4
Brown, D.5
-
29
-
-
0032518177
-
Chlorella virus DNA ligase: Nick recognition and mutational analysis
-
Sriskanda V, Shuman S (1998) Chlorella virus DNA ligase: nick recognition and mutational analysis. Nuc Acids Res 26: 525-531.
-
(1998)
Nuc Acids Res
, vol.26
, pp. 525-531
-
-
Sriskanda, V.1
Shuman, S.2
-
30
-
-
0032531971
-
Mutational analysis of Chlorella virus DNA ligase: Catalytic roles of domain I and motif VI
-
Sriskanda V, Shuman S (1998) Mutational analysis of Chlorella virus DNA ligase: catalytic roles of domain I and motif VI. Nuc Acids Res 26: 4618-4625.
-
(1998)
Nuc Acids Res
, vol.26
, pp. 4618-4625
-
-
Sriskanda, V.1
Shuman, S.2
-
31
-
-
0242299593
-
Kinetics and thermodynamics of nick sealing by T4 DNA ligase
-
Cherepanov AV, de Vries S (2003) Kinetics and thermodynamics of nick sealing by T4 DNA ligase. European Journal of Biochemistry 270: 4315-4325.
-
(2003)
European Journal of Biochemistry
, vol.270
, pp. 4315-4325
-
-
Cherepanov, A.V.1
de Vries, S.2
-
32
-
-
0030873236
-
Functional characterization of the T4 DNA ligase: A new insight into the mechanism of action
-
Rossi R, Montecucco A, Ciarrocchi G, Biamonti G (1997) Functional characterization of the T4 DNA ligase: a new insight into the mechanism of action. Nucleic Acids Research 25: 2106-2113.
-
(1997)
Nucleic Acids Research
, vol.25
, pp. 2106-2113
-
-
Rossi, R.1
Montecucco, A.2
Ciarrocchi, G.3
Biamonti, G.4
-
33
-
-
0036818437
-
Making AppDNA using T4 DNA ligase
-
Chiuman W, Li Y (2002) Making AppDNA using T4 DNA ligase. Bioorg Chem 30: 332-349.
-
(2002)
Bioorg Chem
, vol.30
, pp. 332-349
-
-
Chiuman, W.1
Li, Y.2
-
35
-
-
0030929525
-
Creation and removal of embedded ribonucleotides in chromosomal DNA during mammalian Okazaki fragment processing
-
Rumbaugh J, Murante R, Shi S, Bambara R (1997) Creation and removal of embedded ribonucleotides in chromosomal DNA during mammalian Okazaki fragment processing. J Biol Chem 272: 22591-22599.
-
(1997)
J Biol Chem
, vol.272
, pp. 22591-22599
-
-
Rumbaugh, J.1
Murante, R.2
Shi, S.3
Bambara, R.4
-
38
-
-
34247567490
-
Human DNA ligase IV and the ligase IV/XRCC4 complex: Analysis of nick ligation fidelity
-
Wang Y, Lamarche B, Tsai M (2007) Human DNA ligase IV and the ligase IV/XRCC4 complex: analysis of nick ligation fidelity. Biochemistry 46: 4962-4976.
-
(2007)
Biochemistry
, vol.46
, pp. 4962-4976
-
-
Wang, Y.1
Lamarche, B.2
Tsai, M.3
-
39
-
-
33751088560
-
A systematic, ligation-based approach to study RNA modifications
-
Saikia M, Dai Q, Decatur W, Fournier M, Piccirilli J, et al. (2006) A systematic, ligation-based approach to study RNA modifications. RNA 12: 2025-2033.
-
(2006)
RNA
, vol.12
, pp. 2025-2033
-
-
Saikia, M.1
Dai, Q.2
Decatur, W.3
Fournier, M.4
Piccirilli, J.5
|