메뉴 건너뛰기




Volumn 18, Issue 3, 2012, Pages 213-217

Genomics of epidemic pathogens

Author keywords

Epidemic pathogens; Gene loss; Genomics; Toxins; Virulence

Indexed keywords

ANTITOXIN; BACTERIAL TOXIN; VIRULENCE FACTOR;

EID: 84857607840     PISSN: 1198743X     EISSN: 14690691     Source Type: Journal    
DOI: 10.1111/j.1469-0691.2012.03781.x     Document Type: Review
Times cited : (20)

References (51)
  • 1
    • 40849126450 scopus 로고    scopus 로고
    • Discovery of virulence factors of pathogenic bacteria
    • Wu HJ, Wang HJ, Jennings MP. Discovery of virulence factors of pathogenic bacteria. Curr Opin Chem Biol 2008; 12: 1-9.
    • (2008) Curr Opin Chem Biol , vol.12 , pp. 1-9
    • Wu, H.J.1    Wang, H.J.2    Jennings, M.P.3
  • 4
    • 0035076222 scopus 로고    scopus 로고
    • Reductive evolution in bacteria: Buchnera sp., Rickettsia prowazekii, Mycobacterium leprae
    • Wixon J. Reductive evolution in bacteria: Buchnera sp., Rickettsia prowazekii, Mycobacterium leprae. Comp Funct Genomics 2001; 2: 44-48.
    • (2001) Comp Funct Genomics , vol.2 , pp. 44-48
    • Wixon, J.1
  • 5
    • 0035931926 scopus 로고    scopus 로고
    • Massive gene decay in the leprosy bacillus
    • Cole ST, Eiglmeier K, Parkhill J et al. Massive gene decay in the leprosy bacillus. Nature 2001; 409: 1007-1011.
    • (2001) Nature , vol.409 , pp. 1007-1011
    • Cole, S.T.1    Eiglmeier, K.2    Parkhill, J.3
  • 6
    • 9744258014 scopus 로고    scopus 로고
    • Genome reduction in prokaryotic obligatory parasites of humans: a comparative analysis
    • Sakharkar RK, Dhar KP, Chow TKV. Genome reduction in prokaryotic obligatory parasites of humans: a comparative analysis. Int J Syst Evol Microbiol 2004; 54: 1937-1941.
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 1937-1941
    • Sakharkar, R.K.1    Dhar, K.P.2    Chow, T.K.V.3
  • 7
    • 0032840799 scopus 로고    scopus 로고
    • Genome degradation is an ongoing process in Rickettsia
    • Andersson JO, Andersson SGE. Genome degradation is an ongoing process in Rickettsia. Mol Biol Evol 1999; 16: 1178-1191.
    • (1999) Mol Biol Evol , vol.16 , pp. 1178-1191
    • Andersson, J.O.1    Andersson, S.G.E.2
  • 8
    • 0035860458 scopus 로고    scopus 로고
    • Mechanisms of evolution in Rickettsia conorii and Rickettsia prowazekii
    • Ogata H, Audic S, Renesto-Audiffren P et al. Mechanisms of evolution in Rickettsia conorii and Rickettsia prowazekii. Science 2001; 293: 2093-2098.
    • (2001) Science , vol.293 , pp. 2093-2098
    • Ogata, H.1    Audic, S.2    Renesto-Audiffren, P.3
  • 9
    • 67649111863 scopus 로고    scopus 로고
    • Analysis of the Rickettsia africae genome reveals that virulence acquisition in Rickettsia species may be explained by genome reduction
    • Fournier PE, El Karkouri K, Leroy Q et al. Analysis of the Rickettsia africae genome reveals that virulence acquisition in Rickettsia species may be explained by genome reduction. BMC Genomics 2009; 10: 166-181.
    • (2009) BMC Genomics , vol.10 , pp. 166-181
    • Fournier, P.E.1    El Karkouri, K.2    Leroy, Q.3
  • 10
    • 66749136930 scopus 로고    scopus 로고
    • Massive comparative genomic analysis reveals convergent evolution of specialized bacteria
    • Merhej V, Royer-Carenzi M, Pontarotti P, Raoult D. Massive comparative genomic analysis reveals convergent evolution of specialized bacteria. Biol Direct 2009; 4: 13.
    • (2009) Biol Direct , vol.4 , pp. 13
    • Merhej, V.1    Royer-Carenzi, M.2    Pontarotti, P.3    Raoult, D.4
  • 11
    • 34548415876 scopus 로고    scopus 로고
    • Genome analysis of Minibacterium massiliensis highlights the convergent evolution of water living bacteria
    • Audic S, Robert C, Campagna B et al. Genome analysis of Minibacterium massiliensis highlights the convergent evolution of water living bacteria. Plos Genet 2007; 3: 1454-1463.
    • (2007) Plos Genet , vol.3 , pp. 1454-1463
    • Audic, S.1    Robert, C.2    Campagna, B.3
  • 12
    • 79952808907 scopus 로고    scopus 로고
    • Genomes of the most dangerous epidemic bacteria have a virulent repertoire characterized by fewer genes but more toxin-antitoxin modules
    • Georgiades K, Raoult D. Genomes of the most dangerous epidemic bacteria have a virulent repertoire characterized by fewer genes but more toxin-antitoxin modules. PLoS ONE 2011; 6: e17962.
    • (2011) PLoS ONE , vol.6
    • Georgiades, K.1    Raoult, D.2
  • 13
    • 35848958139 scopus 로고    scopus 로고
    • Extraintestinal virulence is a coincidental by-product of commensalism in B2 phylogenetic group Escherichia coli strains
    • Le Gall T, Clermont O, Gouriou S et al. Extraintestinal virulence is a coincidental by-product of commensalism in B2 phylogenetic group Escherichia coli strains. Mol Biol Evol 2007; 24: 2373-2384.
    • (2007) Mol Biol Evol , vol.24 , pp. 2373-2384
    • Le Gall, T.1    Clermont, O.2    Gouriou, S.3
  • 14
    • 0030115420 scopus 로고    scopus 로고
    • The evolution and maintenance of virulence in microparasites
    • Levin BR. The evolution and maintenance of virulence in microparasites. Emerg Infect Dis 1996; 2: 93-102.
    • (1996) Emerg Infect Dis , vol.2 , pp. 93-102
    • Levin, B.R.1
  • 15
    • 77950421915 scopus 로고    scopus 로고
    • Genome analysis of microorganisms living in amoebae reveals a melting pot of evolution
    • Moliner C, Fournier PE, Raoult D. Genome analysis of microorganisms living in amoebae reveals a melting pot of evolution. FEMS Microbiol Rev 2010; 34: 281-294.
    • (2010) FEMS Microbiol Rev , vol.34 , pp. 281-294
    • Moliner, C.1    Fournier, P.E.2    Raoult, D.3
  • 16
    • 77953708302 scopus 로고    scopus 로고
    • Amoebae as genitors and reservoirs of giant viruses
    • Raoult D, Boyer M. Amoebae as genitors and reservoirs of giant viruses. Intervirology 2010; 53: 321-329.
    • (2010) Intervirology , vol.53 , pp. 321-329
    • Raoult, D.1    Boyer, M.2
  • 17
    • 77953694345 scopus 로고    scopus 로고
    • Amoeba/amoebal symbiont genetic transfers: lessons from giant virus neighbours
    • Thomas V, Greub G. Amoeba/amoebal symbiont genetic transfers: lessons from giant virus neighbours. Intervirology 2010; 53: 254-267.
    • (2010) Intervirology , vol.53 , pp. 254-267
    • Thomas, V.1    Greub, G.2
  • 18
    • 48549097151 scopus 로고    scopus 로고
    • Metagenomics and the niche concepts
    • Marco D. Metagenomics and the niche concepts. Theory Biosci 2008; 127: 241-247.
    • (2008) Theory Biosci , vol.127 , pp. 241-247
    • Marco, D.1
  • 19
    • 0036598066 scopus 로고    scopus 로고
    • Gene transfer in bacteria: speciation without species?
    • Lawrence J. Gene transfer in bacteria: speciation without species? Theor Popul Biol 2002; 61: 449-460.
    • (2002) Theor Popul Biol , vol.61 , pp. 449-460
    • Lawrence, J.1
  • 20
    • 4644311317 scopus 로고    scopus 로고
    • Structural flexibility in the Burkholderia mallei genome
    • Nierman WC, DeShazer D, Kim HS et al. Structural flexibility in the Burkholderia mallei genome. Proc Natl Acad Sci USA 2004; 101: 14246-14251.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 14246-14251
    • Nierman, W.C.1    DeShazer, D.2    Kim, H.S.3
  • 21
    • 52949138281 scopus 로고    scopus 로고
    • The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degraded subset of tickborn Borrelia duttonii
    • Lescot M, Audic S, Robert C et al. The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degraded subset of tickborn Borrelia duttonii. PLoS Genet 2008; 4: e1000185.
    • (2008) PLoS Genet , vol.4
    • Lescot, M.1    Audic, S.2    Robert, C.3
  • 24
    • 0032512051 scopus 로고    scopus 로고
    • The genome sequence of Rickettsia prowazekii and the origin of mitochondria
    • Andersson SG, Zomorodipour A, Andersson JO et al. The genome sequence of Rickettsia prowazekii and the origin of mitochondria. Nature 1998; 396: 133-140.
    • (1998) Nature , vol.396 , pp. 133-140
    • Andersson, S.G.1    Zomorodipour, A.2    Andersson, J.O.3
  • 25
    • 77951796787 scopus 로고    scopus 로고
    • Genomic, proteomic and transcriptomic analysis of virulent and avirulent Rickettsia prowazekii reveals its adaptive mutation capabilities
    • Bechah Y, Karkouri EK, Mediannikov O et al. Genomic, proteomic and transcriptomic analysis of virulent and avirulent Rickettsia prowazekii reveals its adaptive mutation capabilities. Genome Res 2010; 20: 655-663.
    • (2010) Genome Res , vol.20 , pp. 655-663
    • Bechah, Y.1    Karkouri, E.K.2    Mediannikov, O.3
  • 26
    • 0029056825 scopus 로고
    • Shigella flexneri surface protein Icsa is sufficient to direct actin-based motility
    • Goldberg MB, Theriot JA. Shigella flexneri surface protein Icsa is sufficient to direct actin-based motility. Proc Natl Acad Sci USA 1995; 92: 6572-6576.
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 6572-6576
    • Goldberg, M.B.1    Theriot, J.A.2
  • 27
    • 0037452054 scopus 로고    scopus 로고
    • The cytoskeleton cellular motility and the reductionist agenda
    • Pollard TD. The cytoskeleton cellular motility and the reductionist agenda. Nature 2003; 422: 741-745.
    • (2003) Nature , vol.422 , pp. 741-745
    • Pollard, T.D.1
  • 28
    • 77951232931 scopus 로고    scopus 로고
    • Disruption of the Rickettsia rickettsii Sca2 autotransporter inhibits actin based motility
    • Kleba B, Clark TR, Lutter EL, Ellison DW, Hackstadt T. Disruption of the Rickettsia rickettsii Sca2 autotransporter inhibits actin based motility. Infect Immun 2010; 78: 2240-2247.
    • (2010) Infect Immun , vol.78 , pp. 2240-2247
    • Kleba, B.1    Clark, T.R.2    Lutter, E.L.3    Ellison, D.W.4    Hackstadt, T.5
  • 30
    • 84857515056 scopus 로고    scopus 로고
    • Hypervirulent Mycobacterium tuberculosis
    • Casali N. Hypervirulent Mycobacterium tuberculosis. Proc Natl Acad Sci USA 2003; 26: 15918-15923.
    • (2003) Proc Natl Acad Sci USA , vol.26 , pp. 15918-15923
    • Casali, N.1
  • 31
    • 57649174709 scopus 로고    scopus 로고
    • Buruli ulcer: reductive evolution enhances pathogenicity of Mycobacterium ulcerans
    • Demangel C, Stinear TP, Cole ST. Buruli ulcer: reductive evolution enhances pathogenicity of Mycobacterium ulcerans. Nat Rev Microbiol 2009; 7: 50-60.
    • (2009) Nat Rev Microbiol , vol.7 , pp. 50-60
    • Demangel, C.1    Stinear, T.P.2    Cole, S.T.3
  • 32
    • 0042355274 scopus 로고    scopus 로고
    • Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica
    • Parkhill J, Sebaihia M, Preston A et al. Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica. Nat Genet 2003; 35: 32-40.
    • (2003) Nat Genet , vol.35 , pp. 32-40
    • Parkhill, J.1    Sebaihia, M.2    Preston, A.3
  • 33
    • 0028107305 scopus 로고
    • Sequence variation in Shigella sonnei (Sonnei), a pathogenic clone of Escherichia coli, over 4 continents and 41 years
    • Karaolis DKR, Lan RT, Reeves PR. Sequence variation in Shigella sonnei (Sonnei), a pathogenic clone of Escherichia coli, over 4 continents and 41 years. J Clin Microbiol 1994; 32: 796-802.
    • (1994) J Clin Microbiol , vol.32 , pp. 796-802
    • Karaolis, D.K.R.1    Lan, R.T.2    Reeves, P.R.3
  • 34
    • 0034641731 scopus 로고    scopus 로고
    • Multiple independent origins of Shigella clones of Escherichia coli and convergent evolution of many of their characteristics
    • Pupo GM, Lan RT, Reeves PR. Multiple independent origins of Shigella clones of Escherichia coli and convergent evolution of many of their characteristics. Proc Natl Acad Sci USA 2000; 97: 10567-10572.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 10567-10572
    • Pupo, G.M.1    Lan, R.T.2    Reeves, P.R.3
  • 35
    • 0032584169 scopus 로고    scopus 로고
    • Black holes and bacterial pathogenicity: a large genomic deletion that enhances the virulence of Shigella spp. and enteroinvasive Escherichia coli
    • Maurelli AT, Fernandez RE, Bloch CA, Rode CK, Fasano A. Black holes and bacterial pathogenicity: a large genomic deletion that enhances the virulence of Shigella spp. and enteroinvasive Escherichia coli. Proc Natl Acad Sci USA 1998; 95: 3943-3948.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 3943-3948
    • Maurelli, A.T.1    Fernandez, R.E.2    Bloch, C.A.3    Rode, C.K.4    Fasano, A.5
  • 36
    • 0033660888 scopus 로고    scopus 로고
    • Bacterial toxins: methods and protocols
    • Alouf EJ. Bacterial toxins: methods and protocols. Methods Mol Biol 2000; 145: 1-26.
    • (2000) Methods Mol Biol , vol.145 , pp. 1-26
    • Alouf, E.J.1
  • 37
    • 3142544236 scopus 로고    scopus 로고
    • Frontal and stealth attack strategies in microbial pathogenesis
    • Merrell DS, Falkow S. Frontal and stealth attack strategies in microbial pathogenesis. Nature 2004; 430: 250-256.
    • (2004) Nature , vol.430 , pp. 250-256
    • Merrell, D.S.1    Falkow, S.2
  • 39
    • 84897462030 scopus 로고    scopus 로고
    • Comparative genomics evidence that only protein toxins are tagging bad bugs
    • Georgiades K, Raoult D. Comparative genomics evidence that only protein toxins are tagging bad bugs. Front Cell Infect Microbiol 2011; 1: 7.
    • (2011) Front Cell Infect Microbiol , vol.1 , pp. 7
    • Georgiades, K.1    Raoult, D.2
  • 40
    • 33947330447 scopus 로고    scopus 로고
    • Chromosomal toxin-antitoxin loci can diminish large scale genome reductions in the absence of selection
    • Szekeres S, Dauti M, Wilde C, Mazel D, Rowe-Magnus DA. Chromosomal toxin-antitoxin loci can diminish large scale genome reductions in the absence of selection. Mol Microbiol 2007; 63: 1588-1605.
    • (2007) Mol Microbiol , vol.63 , pp. 1588-1605
    • Szekeres, S.1    Dauti, M.2    Wilde, C.3    Mazel, D.4    Rowe-Magnus, D.A.5
  • 41
    • 27944437497 scopus 로고    scopus 로고
    • Toxin-antitoxin modules as bacterial metabolic stress managers
    • Buts L, Lah J, Dao-Thi MH, Wyns L, Loris R. Toxin-antitoxin modules as bacterial metabolic stress managers. Trends Biochem Sci 2005; 30: 672-679.
    • (2005) Trends Biochem Sci , vol.30 , pp. 672-679
    • Buts, L.1    Lah, J.2    Dao-Thi, M.H.3    Wyns, L.4    Loris, R.5
  • 44
    • 77954408888 scopus 로고    scopus 로고
    • The Yersinia pestis chromosome encodes active addiction toxins
    • Goulard C, Langrand S, Carniel E, Chauvaux S. The Yersinia pestis chromosome encodes active addiction toxins. J Bacteriol 2010; 192: 3669-3677.
    • (2010) J Bacteriol , vol.192 , pp. 3669-3677
    • Goulard, C.1    Langrand, S.2    Carniel, E.3    Chauvaux, S.4
  • 45
    • 80055037194 scopus 로고    scopus 로고
    • Effect of rickettsial toxin VapC on its eukaryotic host
    • Audoly G, Vincentelli R, Edouard S et al. Effect of rickettsial toxin VapC on its eukaryotic host. PLoS ONE 2011; 6: e26528.
    • (2011) PLoS ONE , vol.6
    • Audoly, G.1    Vincentelli, R.2    Edouard, S.3
  • 46
    • 0036874116 scopus 로고    scopus 로고
    • Sexual isolation and speciation in bacteria
    • Cohan FM. Sexual isolation and speciation in bacteria. Genetica 2009; 116: 359-370.
    • (2009) Genetica , vol.116 , pp. 359-370
    • Cohan, F.M.1
  • 47
    • 33845890829 scopus 로고    scopus 로고
    • Genomics and the bacterial species problem
    • Doolittle WF, Papke RT. Genomics and the bacterial species problem. Genome Biol 2006; 7: 116.
    • (2006) Genome Biol , vol.7 , pp. 116
    • Doolittle, W.F.1    Papke, R.T.2
  • 48
    • 79952777459 scopus 로고    scopus 로고
    • Linkage, selection and the clonal complex
    • Robinson DA, Falush D, Feil EJ, eds. Hoboken, NJ: John Wiley and Sons, doi:
    • Feil EJ. Linkage, selection and the clonal complex. In: Robinson DA, Falush D, Feil EJ, eds. Bacterial population genetics in infectious disease. Hoboken, NJ: John Wiley and Sons, 2010. doi:.
    • (2010) Bacterial population genetics in infectious disease
    • Feil, E.J.1
  • 49
    • 34249089649 scopus 로고    scopus 로고
    • Origins of major human infectious diseases
    • Wolfe ND, Dunavan CP, Diamond J. Origins of major human infectious diseases. Nature 2007; 447: 279-283.
    • (2007) Nature , vol.447 , pp. 279-283
    • Wolfe, N.D.1    Dunavan, C.P.2    Diamond, J.3
  • 50
    • 79952797542 scopus 로고    scopus 로고
    • Defining pathogenic bacterial species in the genomic era
    • Georgiades K, Raoult D. Defining pathogenic bacterial species in the genomic era. Front Microbiol 2011; 1: 151.
    • (2011) Front Microbiol , vol.1 , pp. 151
    • Georgiades, K.1    Raoult, D.2
  • 51
    • 79960657212 scopus 로고    scopus 로고
    • The 2011 Shiga toxin-producing Escherichia coli O104:H4 German outbreak: a lesson of genomic plasticity
    • Denamur E. The 2011 Shiga toxin-producing Escherichia coli O104:H4 German outbreak: a lesson of genomic plasticity. Clin Microbiol Infect 2011; 17: 1124-1125.
    • (2011) Clin Microbiol Infect , vol.17 , pp. 1124-1125
    • Denamur, E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.