-
1
-
-
0022878676
-
Characterization of a catalytically self-sufficient 119,000-dalton cytochrome P-450 monooxygenase induced by barbiturates in Bacillus megaterium
-
Narhi, L.O.; Fulco, A.J. Characterization of a catalytically selfsufficient 119,000-dalton cytochrome P-450 monooxygenase induces by barbiturates in Bacillus megaterium. J. Biol. Chem., 1986, 261, 7160-7169. (Pubitemid 17224707)
-
(1986)
Journal of Biological Chemistry
, vol.261
, Issue.16
, pp. 7160-7169
-
-
Narhi, L.O.1
Fulco, A.J.2
-
2
-
-
0036558027
-
P450 BM3: The very model of a modern flavocytochrome
-
DOI 10.1016/S0968-0004(02)02086-8, PII S0968000402020868
-
Munro, A.W.; Leys, D.G.; McLean, K.J.; Marshall, K.R.; Ost, T.W.B.; Daff, S.; Miles, C.S.; Chapman, S.K.; Lysek, D.A.; Moser, C.C.; Page, C.C.; Dutton, P.L. P450 BM3: The very model of a modern flavocytochrome. Trends Biochem. Sci., 2002, 27, 250-257. (Pubitemid 34655446)
-
(2002)
Trends in Biochemical Sciences
, vol.27
, Issue.5
, pp. 250-257
-
-
Munro, A.W.1
Leys, D.G.2
McLean, K.J.3
Marshall, K.R.4
Ost, T.W.B.5
Daff, S.6
Miles, C.S.7
Chapman, S.K.8
Lysek, D.A.9
Moser, C.C.10
Page, C.C.11
Dutton P.Leslie12
-
3
-
-
0036560522
-
Cytochrome P450 enzymes in the generation of commercial products
-
Guengerich, F.P. Cytochrome P450 enzymes in the generation of commercial products. Nat. Rev. Drug Discov., 2002, 1, 359-366. (Pubitemid 37361465)
-
(2002)
Nature Reviews Drug Discovery
, vol.1
, Issue.5
, pp. 359-366
-
-
Guengerich, F.P.1
-
4
-
-
43049128108
-
Heme-iron oxygenases: Powerful industrial biocatalysts?
-
Julsing, M.K.; Cornelissen, S.; Bühler, B.; Schmid, A. Heme-iron oxygenases: Powerful industrial biocatalysts? Curr. Opin. Chem. Biol., 2008, 12, 177-186.
-
(2008)
Curr. Opin. Chem. Biol.
, vol.12
, pp. 177-186
-
-
Julsing, M.K.1
Cornelissen, S.2
Bühler, B.3
Schmid, A.4
-
5
-
-
3943081412
-
Structural aspects of ligand binding to and electron transfer in bacterial and fungal P450s
-
DOI 10.1146/annurev.biochem.73.011303.073711
-
Pylypenko, O.; Schlichting, I. Structural aspects of ligand binding to and electron transfer in bacterial and fungal P450s. Annu. Rev. Biochem., 2004, 73, 991-1018. (Pubitemid 39050392)
-
(2004)
Annual Review of Biochemistry
, vol.73
, pp. 991-1018
-
-
Pylypenko, O.1
Schlichting, I.2
-
6
-
-
2442472003
-
Microbiol P450 enzymes in biotechnology
-
Urlacher, V.B.; Lutz-Wahl, S.; Schmid, R.D. Microbiol P450 enzymes in biotechnology. Appl. Microbiol. Biotechnol., 2004, 64, 317-325.
-
(2004)
Appl. Microbiol. Biotechnol.
, vol.64
, pp. 317-325
-
-
Urlacher, V.B.1
Lutz-Wahl, S.2
Schmid, R.D.3
-
7
-
-
20744448051
-
Intermediates in P450 catalysis
-
Poulos, T.J. Intermediates in P450 catalysis. Phil. Trans. Roy. Soc. A, 2005, 363, 793-806.
-
(2005)
Phil. Trans. Roy. Soc. A
, vol.363
, pp. 793-806
-
-
Poulos, T.J.1
-
8
-
-
0033561008
-
Roles of key active-site residues in flavocytochrome P450 BM3
-
DOI 10.1042/0264-6021:3390371
-
Noble, M.A.; Miles, C.S.; Chapman, S.K.; Lysek, D.A.; MacKay, A.C.; Reid, G.A.; Hanzlik, R.P.; Munro, A.W. Roles of key activesite residues in flavocytochrome P450 BM3. Biochem. J., 1999, 339, 371-379. (Pubitemid 29209968)
-
(1999)
Biochemical Journal
, vol.339
, Issue.2
, pp. 371-379
-
-
Noble, M.A.1
Miles, C.S.2
Chapman, S.K.3
Lysek, D.A.4
Mackay, A.C.5
Reid, G.A.6
Hanzlik, R.P.7
Munro, A.W.8
-
9
-
-
0034595354
-
Directed evolution of the fatty-Acid hydroxylase P450 BM-3 into an indolehydroxylating catalyst
-
Li, Q.S.; Schwaneberg, U.; Fischer, P.; Schmid, R.D. Directed evolution of the fatty-Acid hydroxylase P450 BM-3 into an indolehydroxylating catalyst. Chemistry, 2000, 6, 1531-1536.
-
(2000)
Chemistry
, vol.6
, pp. 1531-1536
-
-
Li, Q.S.1
Schwaneberg, U.2
Fischer, P.3
Schmid, R.D.4
-
10
-
-
0242330792
-
Regio- and enantioselective alkane hydroxylation with engineered cytochromes P450 BM-3
-
DOI 10.1021/ja0303790
-
Peters, M.W.; Meinhold, P.; Glieder, A.; Arnold, F.H. Regio-And enantioselective alkane hydroxylation with engineered Cytochromes P450 BM-3. J. Am. Chem. Soc., 2003, 125, 13442-13450. (Pubitemid 37352128)
-
(2003)
Journal of the American Chemical Society
, vol.125
, Issue.44
, pp. 13442-13450
-
-
Peters, M.W.1
Meinhold, P.2
Glieder, A.3
Arnold, F.H.4
-
11
-
-
32544436092
-
Preparation of human metabolites of propranolol using laboratory-evolved bacterial cytochromes P450
-
DOI 10.1002/bit.20744
-
Otey, C.R.; Bandara, G.; Lalonde, J.; Takahashi, K.; Arnold, F.H. Preparation of human metabolites of propanolol using laboratoryevolved bacterial Cytochrome P450. Biotechnol. Bioeng., 2006, 93, 494-499. (Pubitemid 43232175)
-
(2006)
Biotechnology and Bioengineering
, vol.93
, Issue.3
, pp. 494-499
-
-
Otey, C.R.1
Bandara, G.2
Lalonde, J.3
Takahashi, K.4
Arnold, F.H.5
-
12
-
-
33745203031
-
Heterotropic and homotropic cooperativity by a drug-metabolising mutant of cytochrome P450 BM3
-
van Vugt-Lussenburg, B.M.A.; Damsten, M.C.; Maasdijk, D.M.; Vermeulen, N.P.E.; Commandeur, J.N.M. Heterotropic and homotropic cooperativity by a drug-metabolising mutant of cytochrome P450 BM3. Biochem. Biophys. Res. Commun., 2006, 346, 810-818.
-
(2006)
Biochem. Biophys. Res. Commun.
, vol.346
, pp. 810-818
-
-
Van Vugt-Lussenburg, B.M.A.1
Damsten, M.C.2
Maasdijk, D.M.3
Vermeulen, N.P.E.4
Commandeur, J.N.M.5
-
13
-
-
70350518093
-
A panel of Cytochrome P450 variants to produce drug metabolites and diversify lead compounds
-
Sawayama, A.M.; Chen, M.M.Y.; Kulanthaivel, P.; Kuo, M.-S.; Hemmerle, H.; Arnold, F.H. A panel of Cytochrome P450 variants to produce drug metabolites and diversify lead compounds. Chem. Eur. J., 2009, 15, 11723-11729.
-
(2009)
Chem. Eur.J.
, vol.15
, pp. 11723-11729
-
-
Sawayama, A.M.1
Chen, M.M.Y.2
Kulanthaivel, P.3
Kuo, M.-S.4
Hemmerle, H.5
Arnold, F.H.6
-
14
-
-
70349556438
-
A highly active single-mutation variant of P450(BM3) (CYP102A1
-
Whitehouse, C.J.C.; Bell, S.G.; Yang, W.; Yorke, J.A.; Blanford, C.F.; Strong, A.J.F.; Morse, E.J.; Bartlam, M.; Rao, Z.; Wong, L.-L. A highly active single-mutation variant of P450(BM3) (CYP102A1). ChemBioChem, 2009, 10, 1654-1656.
-
(2009)
ChemBioChem
, vol.10
, pp. 1654-1656
-
-
Whitehouse, C.J.C.1
Bell, S.G.2
Yang, W.3
Yorke, J.A.4
Blanford, C.F.5
Strong, A.J.F.6
Morse, E.J.7
Bartlam, M.8
Rao, Z.9
Wong, L.-L.10
-
15
-
-
0031033653
-
A single mutation in cytochrome P450 BM3 changes substrate orientation in a catalytic intermediate and the regiospecificity of hydroxylation
-
DOI 10.1021/bi962826c
-
Oliver, C.F.; Modi, S.; Sutcliffe, M.J.; Primrose, W.U.; Lian, L.-Y.; Roberts, G.C.K. A single mutation in Cytochrome P450 BM3 changes substrate orientation in a catalytic intermediate and the regiospecificity of hydroxylation. Biochemistry, 1997, 36, 1567-1572. (Pubitemid 27086252)
-
(1997)
Biochemistry
, vol.36
, Issue.7
, pp. 1567-1572
-
-
Oliver, C.F.1
Modi, S.2
Sutcliffe, M.J.3
Primrose, W.U.4
Lian, L.-Y.5
Roberts, G.C.K.6
-
16
-
-
0034624234
-
Rational re-design of the substrate binding site of flavocytochrome P450 BM3
-
Ost, T.W.B.; Miles, C.S.; Murdoch, J.; Cheung, Y.-F.; Reid, G.A.; Chapman, S.K.; Munro, A.W. Rational re-design of the substrate binding site of flavocytochrome P450 BM3. FEBS Letters, 2000, 486, 173-177.
-
(2000)
FEBS Letters
, vol.486
, pp. 173-177
-
-
Ost, T.W.B.1
Miles, C.S.2
Murdoch, J.3
Cheung, Y.-F.4
Reid, G.A.5
Chapman, S.K.6
Munro, A.W.7
-
17
-
-
33744520321
-
Cytochromes P450 as versatile biocatalysts
-
DOI 10.1016/j.jbiotec.2006.01.026, PII S016816560600085X
-
Bernhardt, R. Cytochromes P450 as versatile biocatalysts. J. Biotechnol., 2006, 124, 128-145. (Pubitemid 43816140)
-
(2006)
Journal of Biotechnology
, vol.124
, Issue.1
, pp. 128-145
-
-
Bernhardt, R.1
-
18
-
-
65549113338
-
Rational design of a minimal and highly enriched CYP102A1 mutant library with improved regio-, stereo-And chemoselectivity
-
Seifert, A.; Vomund, S.; Grohmann, K.; Kriening, S.; Urlacher, V.B.; Laschat, S.; Pleiss, J. Rational design of a minimal and highly enriched CYP102A1 mutant library with improved regio-, stereo-And chemoselectivity. ChemBioChem, 2009, 10, 853-861.
-
(2009)
ChemBioChem
, vol.10
, pp. 853-861
-
-
Seifert, A.1
Vomund, S.2
Grohmann, K.3
Kriening, S.4
Urlacher, V.B.5
Laschat, S.6
Pleiss, J.7
-
19
-
-
33745410011
-
The role of Thr268 and Phe393 in cytochrome P450 BM3
-
DOI 10.1016/j.jinorgbio.2005.11.020, PII S0162013405003478
-
Clark, J.P.; Miles, C.S.; Mowat, C.G.; Walkinshwaw, M.D.; Reid, G.A.; Daff, S.N.; Chapman, S.K. The role of Thr268 and Phe393 in cytochrome P450 BM3. J. Inorg. Biochem., 2006, 100, 1075-1090. (Pubitemid 44308177)
-
(2006)
Journal of Inorganic Biochemistry
, vol.100
, Issue.5-6
, pp. 1075-1090
-
-
Clark, J.P.1
Miles, C.S.2
Mowat, C.G.3
Walkinshaw, M.D.4
Reid, G.A.5
Daff, S.N.6
Chapman, S.K.7
-
20
-
-
40549094980
-
Structural rationalization of novel drug metabolizing mutants of cytochrome P450 BM3
-
DOI 10.1002/prot.21697
-
Stjernschantz, E.; van Vugt-Lussenburg, B.M.A.; Bonifacio, A.; de Beer, S.B.A.; van der Zwan, G.; Gooijer, C.; Commandeur, J.N.M.; Vermeulen, N.P.E.; Oostenbrink, C. Structural rationalization of novel drug metabolizing mutants of cytochrome P450 BM3. Proteins, 2008, 71, 336-352. (Pubitemid 351358614)
-
(2008)
Proteins: Structure, Function and Genetics
, vol.71
, Issue.1
, pp. 336-352
-
-
Stjernschantz, E.1
Van Vugt-Lussenburg, B.M.A.2
Bonifacio, A.3
De Beer, S.B.A.4
Van Der Zwan, G.5
Gooijer, C.6
Commandeur, J.N.M.7
Vermeulen, N.P.E.8
Oostenbrink, C.9
-
21
-
-
57349146611
-
Anchoring effects in a wide binding pocket: The molecular basis of regioselectivity in engineered cytochrome P450 monooxygenase from B. megaterium
-
DOI 10.1002/prot.22083
-
Branco, R.J.F.; Seifert, A.; Budde, M.; Urlacher, V.B.; Ramos, M.J.; Pleiss, J. Anchoring effects in a wide binding pocket: The molecular basis of regioselectivity in engineered cytochrome P450 monooxygenase from B. megaterium. Proteins, 2008, 73, 597-607. (Pubitemid 352788643)
-
(2008)
Proteins: Structure, Function and Genetics
, vol.73
, Issue.3
, pp. 597-607
-
-
Branco, R.J.F.1
Seifert, A.2
Budde, M.3
Urlacher, V.B.4
Ramos, M.J.5
Pleiss, J.6
-
22
-
-
78650752375
-
Generation of human chiral metabolites of simvastatin and lovastatin by bacterial CYP102A1 mutants
-
Kim, K.-H.; Kang, J.-Y.; Kim, D.-H.; Park, S.-H.; Park, S.H.; Kim, D.; Park, K.D.; Lee, Y.J.; Jung, H.-C.; Pan, J.-G.; Ahn, T.; Yun, C.-H. Generation of human chiral metabolites of simvastatin and lovastatin by bacterial CYP102A1 mutants. Drug Metab. Dispos., 2011, 39, 140-150.
-
(2011)
Drug Metab. Dispos.
, vol.39
, pp. 140-150
-
-
Kim, K.-H.1
Kang, J.-Y.2
Kim, D.-H.3
Park, S.-H.4
Park, S.H.5
Kim, D.6
Park, K.D.7
Lee, Y.J.8
Jung, H.-C.9
Pan, J.-G.10
Ahn, T.11
Yun, C.-H.12
-
23
-
-
79958696989
-
An efficient route to selective bio-oxidation catalysts: An iterative approach comprising modeling, diversification, and screening, based on CYP102A1
-
Seifert, A.; Antonovici, M.; Hauer, B.; Pleiss, J. An efficient route to selective bio-oxidation catalysts: An iterative approach comprising modeling, diversification, and screening, based on CYP102A1. Chem. Bio. Chem., 2011, 12, 1346-1351.
-
(2011)
Chem. Bio. Chem.
, vol.12
, pp. 1346-1351
-
-
Seifert, A.1
Antonovici, M.2
Hauer, B.3
Pleiss, J.4
-
24
-
-
17444411955
-
Cytochrome P450 in silico: An integrative modeling approach
-
DOI 10.1021/jm040180d
-
de Graaf, C.; Vermeulen, N.P.E.; Feenstra, K.A. Cytochrome P450 in silico: An integrative modeling approach. J. Med. Chem., 2005, 48, 2725-2755. (Pubitemid 40548088)
-
(2005)
Journal of Medicinal Chemistry
, vol.48
, Issue.8
, pp. 2725-2755
-
-
De Graaf, C.1
Vermeulen, N.P.E.2
Feenstra, K.A.3
-
25
-
-
33846931755
-
Identification of critical residues in novel drug metabolizing mutants of cytochrome P450 BM3 using random mutagenesis
-
DOI 10.1021/jm0609061
-
van Vugt-Lussenburg, B.M.A.; Stjernschantz, E.; Lastdrager, J.; Oostenbrink, C.; Vermeulen, N.P.E.; Commandeur, J.N.M. Identification of critical residues in novel drug metabolising mutants of Cytochrome P450 BM3 using random mutagenesis. J. Med. Chem., 2007, 50, 455-461. (Pubitemid 46239780)
-
(2007)
Journal of Medicinal Chemistry
, vol.50
, Issue.3
, pp. 455-461
-
-
Van Vugt-Lussenburg, B.M.A.1
Stjernschantz, E.2
Lastdrager, J.3
Oostenbrink, C.4
Vermeulen, N.P.E.5
Commandeur, J.N.M.6
-
26
-
-
0035900342
-
Residue size at position 87 of cytochrome P450 BM-3 determines its stereoselectivity in propylbenzene and 3-chlorostyrene oxidation
-
DOI 10.1016/S0014-5793(01)03074-5, PII S0014579301030745
-
Li, Q.-S.; Ogawa, J.; Schmid, R.D.; Shimizu, S. Residue size at position 87 of cytochrome P450 BM-3 determines its stereoselectivity in propylbenzene and 3-chlorostyrene oxidation. FEBS Letters, 2001, 508, 249-252. (Pubitemid 33079255)
-
(2001)
FEBS Letters
, vol.508
, Issue.2
, pp. 249-252
-
-
Li, Q.-S.1
Ogawa, J.2
Schmid, R.D.3
Shimizu, S.4
-
27
-
-
18144389824
-
Evaluation of alkoxyresorufins as fluorescent substrates for cytochrome P450 BM3 and site-directed mutants
-
DOI 10.1016/j.ab.2005.02.025
-
van Vugt-Lussenburg, B.M.A.; Babel, L.C.; Vermeulen, N.P.E.; Commandeur, J.N.M. Evaluation of alkoxyresorufins as fluorescent substrates for Cytochrome P450 BM3 and site-directes mutants. Anal. Biochem., 2005, 341, 148-155. (Pubitemid 40615731)
-
(2005)
Analytical Biochemistry
, vol.341
, Issue.1
, pp. 148-155
-
-
Lussenburg, B.M.A.1
Babel, L.C.2
Vermeulen, N.P.E.3
Commandeur, J.N.M.4
-
28
-
-
34748851229
-
Filling a Hole in Cytochrome P450 BM3 Improves Substrate Binding and Catalytic Efficiency
-
DOI 10.1016/j.jmb.2007.08.015, PII S0022283607010868
-
Huang, W.-C.; Westlake, A.C.G.; Maréchal, J.-D.; Gordon Joyce, M.; Moody, P.C.E.; Roberts, G.C.K. Filling a hole in cytochrome P450 BM3 improves substrate binding and catalytic efficiency. J. Mol. Biol., 2007, 373, 633-651. (Pubitemid 47488398)
-
(2007)
Journal of Molecular Biology
, vol.373
, Issue.3
, pp. 633-651
-
-
Huang, W.-C.1
Westlake, A.C.G.2
Marechal, J.-D.3
Joyce, M.G.4
Moody, P.C.E.5
Roberts, G.C.K.6
-
29
-
-
80051550259
-
Role of residue 87 in substrate selectivity and regioselectivity of drug-metabolising cytochrome P450 CYP102A1 M11
-
DOI 10.1007/s00775-011-0789-4
-
Vottero, E.; Rea, V.; Lastdrager, J.; Honing, M.; Vermeulen, N.P.E.; Commandeur, J.N.M. Role of residue 87 in substrate selectivity and regioselectivity of drug-metabolising cytochrome P450 CYP102A1 M11. J. Biol. Inorg. Chem., 2011, DOI 10.1007/s00775-011-0789-4.
-
(2011)
J. Biol. Inorg. Chem.
-
-
Vottero, E.1
Rea, V.2
Lastdrager, J.3
Honing, M.4
Vermeulen, N.P.E.5
Commandeur, J.N.M.6
-
30
-
-
31444446064
-
Hydroxylation of testosterone by bacterial cytochromes P450 using the Escherichia coli expression system
-
DOI 10.1271/bbb.70.307
-
Agematu, H.; Matsumoto, N.; Fuji, Y.; Kabumoto, H.; Doi, S.; Machida, K.; Ishikawa, J.; Arisawa, A. Hydroxylation of testosterone by bacterial cytochromes P450 using the Escherichia coli expression system. Biosci. Biotechnol. Biochem., 2006, 70, 307-311. (Pubitemid 43150998)
-
(2006)
Bioscience, Biotechnology and Biochemistry
, vol.70
, Issue.1
, pp. 307-311
-
-
Agematu, H.1
Matsumoto, N.2
Fujii, Y.3
Kabumoto, H.4
Doi, S.5
Machida, K.6
Ishikawa, J.7
Arisawa, A.8
-
31
-
-
84961985438
-
Monooxygenation mechanism by cytochrome P-450
-
DOI 10.1021/ja000908p
-
Hata, M.; Hirano, Y.; Hoshino, T.; Tsuda, M. Monooxygenation mechanism by cytochrome P-450. J. Am. Chem. Soc., 2001, 123, 6410-6416. (Pubitemid 32904669)
-
(2001)
Journal of the American Chemical Society
, vol.123
, Issue.26
, pp. 6410-6416
-
-
Hata, M.1
Hirano, Y.2
Hoshino, T.3
Tsuda, M.4
-
32
-
-
0037457699
-
Microbial conversion of steroid compounds: Recent developments
-
DOI 10.1016/S0141-0229(03)00029-2
-
Fernandes, P.; Cruz, A.; Angelova, B.; Pinheiro, H.M.; Cabral, J.M.S. Microbial conversion of steroid compounds: Recent developments. Enzyme Microb. Technol., 2003, 32, 688-705. (Pubitemid 36513765)
-
(2003)
Enzyme and Microbial Technology
, vol.32
, Issue.6
, pp. 688-705
-
-
Fernandes, P.1
Cruz, A.2
Angelova, B.3
Pinheiro, H.M.4
Cabral, J.M.S.5
-
33
-
-
80051546431
-
-
in preparation
-
Rea, V.; Kolkman, A.J.; Vottero, E.; Stronks, E.; Ampt, K.A.M.; Vermeulen, N.P.E.; Commandeur, J.N.M. Restriction of active site volume of cytochrome P450 BM3 mutants improves regioselectivity of steroid hydroxylation as rationalised by spin relaxation NMR studies. in preparation.
-
Restriction of Active Site Volume of Cytochrome P450 BM3 Mutants Improves Regioselectivity of Steroid Hydroxylation as Rationalised by Spin Relaxation NMR Studies
-
-
Rea, V.1
Kolkman, A.J.2
Vottero, E.3
Stronks, E.4
Ampt, K.A.M.5
Vermeulen, N.P.E.6
Commandeur, J.N.M.7
-
34
-
-
0020491251
-
A geometric approach to macromolecule-ligand interactions
-
Kuntz, I.D.; Blaney, J.M.; Oatley, S.J.; Langridge, R.; Ferrin, T.E. A geometric approach to macromolecule-ligand interactions. J. Mol. Biol., 1982, 161, 269-288.
-
(1982)
J. Mol. Biol.
, vol.161
, pp. 269-288
-
-
Kuntz, I.D.1
Blaney, J.M.2
Oatley, S.J.3
Langridge, R.4
Ferrin, T.E.5
-
35
-
-
4544367743
-
Comparative evaluation of eight docking tools for docking and virtual screening accuracy
-
DOI 10.1002/prot.20149
-
Kellenberger, E.; Rodrigo, J.; Muller, P.; Rognan, D. Comparative evaluation of eight docking tools for docking and virtual screening accuracy. Proteins, 2004, 57, 225-242. (Pubitemid 39223729)
-
(2004)
Proteins: Structure, Function and Genetics
, vol.57
, Issue.2
, pp. 225-242
-
-
Kellenberger, E.1
Rodrigo, J.2
Muller, P.3
Rognan, D.4
-
36
-
-
0034031910
-
Regioselective hydroxylation of debrisoquine by cytochrome P4502D6: Implications for active site modelling
-
Lightfoot, T.; Ellis, S.W.; Mahling, J.; Ackland, M.J.; Blaney, F.E.; Bijloo, G.J.; de Groot, M.J.; Vermeulen, N.P.E.; Blackburn, G.M.; Lennard, M.S.; Tucker, G.T. Regioselective hydroxylation of debrisoquine by cytochrome P4502D6: Implications for active site modelling. Xenobiotica, 2000, 30, 219-233. (Pubitemid 30179137)
-
(2000)
Xenobiotica
, vol.30
, Issue.3
, pp. 219-233
-
-
Lightfoot, T.1
Ellis, S.W.2
Mahling, J.3
Ackland, M.J.4
Blaney, F.E.5
Bijloo, G.J.6
De Groot, M.J.7
Vermeulen, N.P.E.8
Blackburn, G.M.9
Lennard, M.S.10
Tucker, G.T.11
-
37
-
-
27444434892
-
MetaSite: Understanding metabolism in human cytochromes from the perspective of the chemist
-
DOI 10.1021/jm050529c
-
Cruciani, G.; Carosati, E.; DeBoeck, B.; Ethirajulu, K.; Mackie, C.; Howe, T.; Vianello, R. MetaSite: Understanding metabolism in human cytochromes from the perspective of the chemist. J. Med. Chem., 2005, 48, 6970-6979. (Pubitemid 41533118)
-
(2005)
Journal of Medicinal Chemistry
, vol.48
, Issue.22
, pp. 6970-6979
-
-
Cruciani, G.1
Carosati, E.2
De Boeck, B.3
Ethirajulu, K.4
Mackie, C.5
Howe, T.6
Vianello, R.7
-
38
-
-
33646107162
-
Catalytic site prediction and virtual screening of cytochrome P450 2D6 substrates by consideration of water and rescoring in automated docking
-
de Graaf, C.; Oostenbrink, C.; Keizers, P.H.J.; van der Wijst, T.; Jongejan, A.; Vermeulen, N.P.E. Catalytic site prediction and virtual screening of cytochrome P450 2D6 substrates by consideration of water and rescoring in automated docking. J. Med. Chem., 2006, 49, 2417-2430.
-
(2006)
J. Med. Chem.
, vol.49
, pp. 2417-2430
-
-
De Graaf, C.1
Oostenbrink, C.2
Keizers, P.H.J.3
Van Der Wijst, T.4
Jongejan, A.5
Vermeulen, N.P.E.6
-
39
-
-
33847035148
-
State-of-The-Art tools for computational site of metabolism predicitons: Comparative analysis, mechanistical insights, and future applications
-
Afzelius, L.; Arnby, C.H.; Broo, A.; Carlsson, L.; Isaksson, C.; Jurva, U.; Kjellander, B.; Kolmodin, K.; Nilsson, K.; Raubacher, F.; Weidolf, L. State-of-the-Art tools for computational site of metabolism predicitons: Comparative analysis, mechanistical insights, and future applications. Drug Metab. Rev., 2007, 39, 61-86.
-
(2007)
Drug Metab. Rev.
, vol.39
, pp. 61-86
-
-
Afzelius, L.1
Arnby, C.H.2
Broo, A.3
Carlsson, L.4
Isaksson, C.5
Jurva, U.6
Kjellander, B.7
Kolmodin, K.8
Nilsson, K.9
Raubacher, F.10
Weidolf, L.11
-
40
-
-
78449309981
-
The SMARTCyp cytochrome P450 metabolism prediction server
-
Rydberg, P.; Gloriam, D.E.; Olsen, L. The SMARTCyp cytochrome P450 metabolism prediction server. Bioinformatics, 2010, 26, 2988-2989.
-
(2010)
Bioinformatics
, vol.26
, pp. 2988-2989
-
-
Rydberg, P.1
Gloriam, D.E.2
Olsen, L.3
-
41
-
-
79954997862
-
Understanding the determinants of selectivity in drug metabolism trhough modeling of dextromethorphan oxidation by cytochrome P450
-
Oláh, J.; Mulholland, A.J.; Harvey, J.N. Understanding the determinants of selectivity in drug metabolism trhough modeling of dextromethorphan oxidation by cytochrome P450. Proc. Natl. Acad. Sci., 2011, 108, 6050-6055.
-
(2011)
Proc. Natl. Acad. Sci.
, vol.108
, pp. 6050-6055
-
-
Oláh, J.1
Mulholland, A.J.2
Harvey, J.N.3
-
42
-
-
57349106476
-
Impact of plasticity and flexibility on docking results for Cytochrome P450 2D6: A combined approach of molecular dynamics and ligand docking
-
Hritz, J.; de Ruiter, A.; Oostenbrink, C. Impact of plasticity and flexibility on docking results for Cytochrome P450 2D6: A combined approach of molecular dynamics and ligand docking. J. Med. Chem., 2008, 51, 7469-7477.
-
(2008)
J. Med. Chem.
, vol.51
, pp. 7469-7477
-
-
Hritz, J.1
De Ruiter, A.2
Oostenbrink, C.3
-
44
-
-
0036680063
-
Protein flexibility and drug design: How to hit a moving target
-
DOI 10.1016/S1367-5931(02)00341-1
-
Carlson, H.A. Protein flexibility and drug design: How to hit a moving target. Curr. Opin. Chem. Biol., 2002, 6, 447-452. (Pubitemid 34804766)
-
(2002)
Current Opinion in Chemical Biology
, vol.6
, Issue.4
, pp. 447-452
-
-
Carlson, H.A.1
-
45
-
-
78649867646
-
Accounting for induced-fit effects in docking: What is possible and what is not?
-
Sotriffer, C.A. Accounting for induced-fit effects in docking: What is possible and what is not? Curr. Top. Med. Chem., 2011, 11, 179-191.
-
(2011)
Curr. Top. Med. Chem.
, vol.11
, pp. 179-191
-
-
Sotriffer, C.A.1
-
46
-
-
79953180618
-
Significant enhancement of docking sensitivity using implicit ligand sampling
-
Xu, M.; Lill, M.A. Significant enhancement of docking sensitivity using implicit ligand sampling. J. Chem. Inf. Model., 2011, 51, 693-706.
-
(2011)
J. Chem. Inf. Model.
, vol.51
, pp. 693-706
-
-
Xu, M.1
Lill, M.A.2
-
47
-
-
0028693767
-
Prediction of the binding-sites of huperzine-A in acetylcholinesterase by docking studies
-
Pang, Y.P.; Kozikowski, A.P. Prediction of the binding-sites of huperzine-A in acetylcholinesterase by docking studies. J. Comput. Aid. Mol. Des., 1994, 8, 669-681.
-
(1994)
J. Comput. Aid. Mol. Des.
, vol.8
, pp. 669-681
-
-
Pang, Y.P.1
Kozikowski, A.P.2
-
48
-
-
29144478787
-
Target flexibility in molecular recognition
-
DOI 10.1016/j.bbapap.2005.07.041, PII S157096390500302X
-
McCammon, J.A. Target flexibility in molecular recognition. Biochim. biophys. acta, 2005, 1754, 221-224. (Pubitemid 41797701)
-
(2005)
Biochimica et Biophysica Acta - Proteins and Proteomics
, vol.1754
, Issue.1-2
, pp. 221-224
-
-
McCammon, J.A.1
-
49
-
-
20644438873
-
Chemistry with ADF
-
DOI 10.1002/jcc.1056
-
te Velde, G.; Bickelhaupt, F.M.; Baerends, E.J.; Fonseca Guerra, C.; van Gisbergen, S.J.A.; Snijders, J.G.; Ziegler, T. Chemistry with ADF. J. Comp. Chem., 2001, 22, 931-967 www.scm.com. (Pubitemid 32455733)
-
(2001)
Journal of Computational Chemistry
, vol.22
, Issue.9
, pp. 931-967
-
-
Bickelhaupt, F.M.1
-
50
-
-
10844250937
-
4 to Pd: Importance of basis-set flexibility and polarization
-
DOI 10.1063/1.1792151
-
de Jong, G.T.; Solà, M.; Visscher, L.; Bickelhaupt, F.M. Ab initio benchmark study for the oxidative addition of CH4 to Pd: Importance of basis-set flexibility and polarization. J. Chem. Phys., 2004, 121, 9982-9992. (Pubitemid 40001653)
-
(2004)
Journal of Chemical Physics
, vol.121
, Issue.20
, pp. 9982-9992
-
-
Theodoor De Jong, G.1
Sola, M.2
Visscher, L.3
Bickelhaupt, F.M.4
-
51
-
-
0000291884
-
Central bond in the three CN' dimers NC-CN, CNCN, and CN-NC: Electron pair bonding and Pauli repulsion effects
-
Bickelhaupt, F.M.; Nibbering, N.M.M.; van Wezenbeek, E.M.; Baerends, E.J. Central bond in the three CN' dimers NC-CN, CNCN, and CN-NC: Electron pair bonding and Pauli repulsion effects. J. Phys. Chem., 1992, 96, 4864-4873.
-
(1992)
J. Phys. Chem.
, vol.96
, pp. 4864-4873
-
-
Bickelhaupt, F.M.1
Nibbering, N.M.M.2
Van Wezenbeek, E.M.3
Baerends, E.J.4
-
52
-
-
0001752408
-
Nature of the three-electron bond in H2S therefore SH2 +
-
Bickelhaupt, F.M.; Diefenbach, A.; de Visser, S.P.; de Koning, L.J.; Nibbering, N.M.M. Nature of the three-electron bond in H2S therefore SH2 +. J. Phys. Chem. A., 1998, 102, 9549-9553.
-
(1998)
J. Phys. Chem.A.
, vol.102
, pp. 9549-9553
-
-
Bickelhaupt, F.M.1
Diefenbach, A.2
De Visser, S.P.3
De Koning, L.J.4
Nibbering, N.M.M.5
-
53
-
-
0033514990
-
Structure of a cytochrome P450-redox partner electron-transfer complex
-
DOI 10.1073/pnas.96.5.1863
-
Sevrioukova, I.F.; Li, H.; Zhang, H.; Peterson, J.A.; Poulos, T.L. Structure of a cytochrome P450-redox partner electron-transfer complex Proc. Natl. Acad. Sci., 1999, 96, 1863-1868. (Pubitemid 29117833)
-
(1999)
Proceedings of the National Academy of Sciences of the United States of America
, vol.96
, Issue.5
, pp. 1863-1868
-
-
Sevrioukova, I.F.1
Li, H.2
Zhang, H.3
Peterson, J.A.4
Poulos, T.L.5
-
55
-
-
0003544049
-
-
Vdf Hochschulverlag AG an der ETH Zürich: Zürich
-
van Gunsteren, W.F.; Billeter, S.R.; Eising, A.A.; Hünenberger, P.H.; Krüger, P.; Mark, A.E.; Scott, W.R.P.; Tironi, I.G., Biomolecular simulation: The GROMOS96 manual and user guide. Vdf Hochschulverlag AG an der ETH Zürich: Zürich, 1996.
-
(1996)
Biomolecular simulation: The GROMOS96 manual and user guide
-
-
Van Gunsteren, W.F.1
Billeter, S.R.2
Eising, A.A.3
Hünenberger, P.H.4
Krüger, P.5
Mark, A.E.6
Scott, W.R.P.7
Tironi, I.G.8
-
56
-
-
30444448249
-
The GROMOS software for biomolecular simulation: GROMOS05
-
DOI 10.1002/jcc.20303
-
Christen, M.; Hünenberger, P.H.; Bakowies, D.; Baron, R.; Bürgi, R.; Geerke, D.; Heinz, T.N.; Kastenholz, M.A.; Kräutler, V.; Oostenbrink, C.; Peter, C.; Trzesniak, D.; van Gunsteren, W.F. The GROMOS software for biomolecular simulation: GROMOS05. J. Comp. Chem., 2005, 26, 1719-1751. (Pubitemid 43076183)
-
(2005)
Journal of Computational Chemistry
, vol.26
, Issue.16
, pp. 1719-1751
-
-
Christen, M.1
Hunenberger, P.H.2
Bakowies, D.3
Baron, R.4
Burgi, R.5
Geerke, D.P.6
Heinz, T.N.7
Kastenholz, M.A.8
Krautler, V.9
Oostenbrink, C.10
Peter, C.11
Trzesniak, D.12
Van Gunsteren, W.F.13
-
57
-
-
24144451813
-
A new GROMOS force field for hexopyranose-based carbohydrates
-
DOI 10.1002/jcc.20275
-
Lins, R.D.; Hünenberger, P.H. A new GROMOS force field for hexopyranose-based carbohydrates. J. Comp. Chem., 2005, 26, 1400-1412. (Pubitemid 41454629)
-
(2005)
Journal of Computational Chemistry
, vol.26
, Issue.13
, pp. 1400-1412
-
-
Lins, R.D.1
Hunenberger, P.H.2
-
58
-
-
0002775934
-
Interaction models for water in relation to protein hydration
-
Pullman, B., Ed. Reidel: Dordrecht, The Netherlands
-
Berendsen, H.J.C.; Postma, J.P.M.; van Gunsteren, W.F.; Hermans, J., Interaction models for water in relation to protein hydration. In Intermolecular Forces, Pullman, B., Ed. Reidel: Dordrecht, The Netherlands, 1981; pp 331-342.
-
(1981)
Intermolecular Forces
, pp. 331-342
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Van Gunsteren, W.F.3
Hermans, J.4
-
59
-
-
33646940952
-
Numerical integration of cartesian equations of motion of a system with constraints: Molecular dynamics of n-Alkanes
-
Ryckaert, J.-P.; Ciccotti, G.; Berendsen, H.J.C. Numerical integration of cartesian equations of motion of a system with constraints: Molecular dynamics of n-Alkanes. J. Comp. Phys., 1977, 23, 327-341.
-
(1977)
J. Comp. Phys.
, vol.23
, pp. 327-341
-
-
Ryckaert, J.-P.1
Ciccotti, G.2
Berendsen, H.J.C.3
-
62
-
-
0031552362
-
Development and validation of a genetic algorithm for flexible docking
-
DOI 10.1006/jmbi.1996.0897
-
Jones, G.; Willett, P.; Glen, R.C.; Leach, A.R.; Taylor, R. Development and validation of a genetic algorithm for flexible docking. J. Mol. Biol., 1997, 267, 727-748. (Pubitemid 27170693)
-
(1997)
Journal of Molecular Biology
, vol.267
, Issue.3
, pp. 727-748
-
-
Jones, G.1
Willett, P.2
Glen, R.C.3
Leach, A.R.4
Taylor, R.5
-
63
-
-
0031226772
-
Empirical scoring functions: I. The development of a fast empirical scoring function to estimate the binding affinity of ligands in receptor complexes
-
Eldridge, M.D.; Murray, C.W.; Auton, T.R.; Paolini, G.V.; Mee, R.P. Empirical scoring functions: I. The development of a fast empirical scoring function to estimate the binding affinity of ligands in receptor complexes. J. Comp. Aid. Mol. Des., 1997, 11, 425-445. (Pubitemid 127505895)
-
(1997)
Journal of Computer-Aided Molecular Design
, vol.11
, Issue.5
, pp. 425-445
-
-
Eldridge, M.D.1
Murray, C.W.2
Auton, T.R.3
Paolini, G.V.4
Mee, R.P.5
-
64
-
-
13944260141
-
Prediction of binding modes for ligands in the cytochromes P450 and other heme-containing proteins
-
DOI 10.1002/prot.20389
-
Kirton, S.B.; Murray, C.W.; Verdonk, M.L.; Taylor, R. Prediction of binding modes for ligands in the Cytochromes P450 and other heme-containing proteins. Proteins, 2005, 58, 836-844. (Pubitemid 40271248)
-
(2005)
Proteins: Structure, Function and Genetics
, vol.58
, Issue.4
, pp. 836-844
-
-
Kirton, S.B.1
Murray, C.W.2
Verdonk, M.L.3
Taylor, R.D.4
-
65
-
-
0033557181
-
Folding-unfolding thermodynamics of a α-heptapeptide from equilibrium simulations
-
DOI 10.1002/(SICI)1097-0134(19990215)34:3<269::AID-PROT1>3.0.CO;2-3
-
Daura, X.; van Gunsteren, W.F.; Mark, A.E. Folding-unfolding thermodynamics of a α-heptapeptide from equilibrium simulations. Proteins, 1999, 34, 269-280. (Pubitemid 29071670)
-
(1999)
Proteins: Structure, Function and Genetics
, vol.34
, Issue.3
, pp. 269-280
-
-
Daura, X.1
Van Gunsteren, W.F.2
Mark, A.E.3
-
66
-
-
33847259882
-
Combining substrate dynamics, binding statistics, and energy barriers to rationalize regioselective hydroxylation of octane and lauric acid by CYP102A1 and mutants
-
DOI 10.1110/ps.062224407
-
Feenstra, K.A.; Starikov, E.B.; Urlacher, V.B.; Commandeur, J.N.M.; Vermeulen, N.P.E. Combining substrate dynamics, binding statistics, and energy barriers to rationalize regioselective hydroxylation of octane and lauric acid by CYP102A1 and mutants. Protein Sci., 2007, 16, 420-431. (Pubitemid 46327553)
-
(2007)
Protein Science
, vol.16
, Issue.3
, pp. 420-431
-
-
Feenstra, K.A.1
Starikov, E.B.2
Urlacher, V.B.3
Commandeur, J.N.M.4
Vermeulen, N.P.E.5
-
67
-
-
35148824181
-
Unusual regioselectivity and active site topology of human cytochrome P450 2J2
-
Lafite, P.; André, F.; Zeldin, D.C.; Dansette, P.M.; Mansuy, D. Unusual regioselectivity and active site topology of human cytochrome P450 2J2. Biochemistry, 2007, 46, 10237-10247.
-
(2007)
Biochemistry
, vol.46
, pp. 10237-10247
-
-
Lafite, P.1
André, F.2
Zeldin, D.C.3
Dansette, P.M.4
Mansuy, D.5
|