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Volumn 6, Issue 8, 2011, Pages

Diversity in the architecture of ATLs, a family of plant ubiquitin-ligases, leads to recognition and targeting of substrates in different cellular environments

Author keywords

[No Author keywords available]

Indexed keywords

ATL PROTEIN; PROTEIN DSK2A; RING FINGER PROTEIN; UBIQUILIN; UBIQUITIN PROTEIN LIGASE COP1; UNCLASSIFIED DRUG; VEGETABLE PROTEIN; UBIQUITIN PROTEIN LIGASE;

EID: 84857375684     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0023934     Document Type: Article
Times cited : (48)

References (75)
  • 1
    • 0036083396 scopus 로고    scopus 로고
    • The ubiquitin-proteasome proteolytic pathway: destruction for the sake of construction
    • Glickman MH, Ciechanover A, (2002) The ubiquitin-proteasome proteolytic pathway: destruction for the sake of construction. Physiological reviews 82: 373.
    • (2002) Physiological Reviews , vol.82 , pp. 373
    • Glickman, M.H.1    Ciechanover, A.2
  • 2
    • 67349254570 scopus 로고    scopus 로고
    • The ubiquitin-26S proteasome system at the nexus of plant biology
    • Vierstra RD, (2009) The ubiquitin-26S proteasome system at the nexus of plant biology. Nature Reviews Molecular Cell Biology 10: 385-397.
    • (2009) Nature Reviews Molecular Cell Biology , vol.10 , pp. 385-397
    • Vierstra, R.D.1
  • 4
    • 44949231368 scopus 로고    scopus 로고
    • Genome-wide and functional annotation of human E3 ubiquitin ligases identifies MULAN, a mitochondrial E3 that regulates the organelle's dynamics and signaling
    • Li W, Bengtson MH, Ulbrich A, Matsuda A, Reddy VA, et al. (2008) Genome-wide and functional annotation of human E3 ubiquitin ligases identifies MULAN, a mitochondrial E3 that regulates the organelle's dynamics and signaling. PLoS One 3: e1487.
    • (2008) PLoS One , vol.3
    • Li, W.1    Bengtson, M.H.2    Ulbrich, A.3    Matsuda, A.4    Reddy, V.A.5
  • 5
  • 8
    • 33746228127 scopus 로고    scopus 로고
    • Distinct ubiquitin-ligase complexes define convergent pathways for the degradation of ER proteins
    • Carvalho P, Goder V, Rapoport TA, (2006) Distinct ubiquitin-ligase complexes define convergent pathways for the degradation of ER proteins. Cell 126: 361-373.
    • (2006) Cell , vol.126 , pp. 361-373
    • Carvalho, P.1    Goder, V.2    Rapoport, T.A.3
  • 11
    • 33644805023 scopus 로고    scopus 로고
    • A duplicated pair of Arabidopsis RING finger E3 ligases contribute to the RPM1 and RPS2 mediated hypersensitive response
    • Kawasaki T, Nam J, Boyes DC, Holt BF III, Hubert DA, et al. (2005) A duplicated pair of Arabidopsis RING finger E3 ligases contribute to the RPM1 and RPS2 mediated hypersensitive response. The Plant Journal 44: 258-270.
    • (2005) The Plant Journal , vol.44 , pp. 258-270
    • Kawasaki, T.1    Nam, J.2    Boyes, D.C.3    Holt III, B.F.4    Hubert, D.A.5
  • 12
    • 0345493849 scopus 로고    scopus 로고
    • Early elicitor induction in members of a novel multigene family coding for highly related RING-H2 proteins in Arabidopsis thaliana
    • Salinas-Mondragón RE, Garcidueñas-Piña C, Guzmán P, (1999) Early elicitor induction in members of a novel multigene family coding for highly related RING-H2 proteins in Arabidopsis thaliana. Plant molecular biology 40: 579-590.
    • (1999) Plant Molecular Biology , vol.40 , pp. 579-590
    • Salinas-Mondragón, R.E.1    Garcidueñas-Piña, C.2    Guzmán, P.3
  • 13
    • 33645522090 scopus 로고    scopus 로고
    • The ATL gene family from Arabidopsis thaliana and Oryza sativa comprises a large number of putative ubiquitin ligases of the RING-H2 type
    • Serrano M, Parra S, Alcaraz LD, Guzmán P, (2006) The ATL gene family from Arabidopsis thaliana and Oryza sativa comprises a large number of putative ubiquitin ligases of the RING-H2 type. Journal of molecular evolution 62: 434-445.
    • (2006) Journal of Molecular Evolution , vol.62 , pp. 434-445
    • Serrano, M.1    Parra, S.2    Alcaraz, L.D.3    Guzmán, P.4
  • 14
    • 0029963729 scopus 로고    scopus 로고
    • Gene isolation inArabidopsis thaliana by conditional overexpression of cDNAs toxic toSaccharomyces cerevisiae: identification of a novel early response zinc-finger gene
    • Martínez-García M, Garcidueñas-Piña C, Guzmán P, (1996) Gene isolation inArabidopsis thaliana by conditional overexpression of cDNAs toxic toSaccharomyces cerevisiae: identification of a novel early response zinc-finger gene. Molecular and General Genetics MGG 252: 587-596.
    • (1996) Molecular and General Genetics MGG , vol.252 , pp. 587-596
    • Martínez-García, M.1    Garcidueñas-Piña, C.2    Guzmán, P.3
  • 15
    • 33747882566 scopus 로고    scopus 로고
    • Genetic interactions of a putative Arabidopsis thaliana ubiquitin-ligase with components of the Saccharomyces cerevisiae ubiquitination machinery
    • Aguilar-Henonin L, Bravo J, Guzmán P, (2006) Genetic interactions of a putative Arabidopsis thaliana ubiquitin-ligase with components of the Saccharomyces cerevisiae ubiquitination machinery. Current genetics 50: 257-268.
    • (2006) Current Genetics , vol.50 , pp. 257-268
    • Aguilar-Henonin, L.1    Bravo, J.2    Guzmán, P.3
  • 16
    • 3142766061 scopus 로고    scopus 로고
    • Isolation and gene expression analysis of Arabidopsis thaliana mutants with constitutive expression of ATL2, an early elicitor-response RING-H2 zinc-finger gene
    • Serrano M, Guzmán P, (2004) Isolation and gene expression analysis of Arabidopsis thaliana mutants with constitutive expression of ATL2, an early elicitor-response RING-H2 zinc-finger gene. Genetics 167: 919.
    • (2004) Genetics , vol.167 , pp. 919
    • Serrano, M.1    Guzmán, P.2
  • 17
    • 33845632472 scopus 로고    scopus 로고
    • The LeATL6-associated ubiquitin/proteasome system may contribute to fungal elicitor-activated defense response via the jasmonic acid-dependent signaling pathway in tomato
    • Hondo D, Hase S, Kanayama Y, Yoshikawa N, Takenaka S, et al. (2007) The LeATL6-associated ubiquitin/proteasome system may contribute to fungal elicitor-activated defense response via the jasmonic acid-dependent signaling pathway in tomato. Molecular plant-microbe interactions 20: 72-81.
    • (2007) Molecular Plant-Microbe Interactions , vol.20 , pp. 72-81
    • Hondo, D.1    Hase, S.2    Kanayama, Y.3    Yoshikawa, N.4    Takenaka, S.5
  • 18
    • 0036015057 scopus 로고    scopus 로고
    • EL5, a rice N acetylchitooligosaccharide elicitor responsive RING H2 finger protein, is a ubiquitin ligase which functions in vitro in co operation with an elicitor responsive ubiquitin conjugating enzyme, OsUBC5b
    • Takai R, Matsuda N, Nakano A, Hasegawa K, Akimoto C, et al. (2002) EL5, a rice N acetylchitooligosaccharide elicitor responsive RING H2 finger protein, is a ubiquitin ligase which functions in vitro in co operation with an elicitor responsive ubiquitin conjugating enzyme, OsUBC5b. The Plant Journal 30: 447-455.
    • (2002) The Plant Journal , vol.30 , pp. 447-455
    • Takai, R.1    Matsuda, N.2    Nakano, A.3    Hasegawa, K.4    Akimoto, C.5
  • 19
    • 26944447546 scopus 로고    scopus 로고
    • Loss-of-function mutations in chitin responsive genes show increased susceptibility to the powdery mildew pathogen Erysiphe cichoracearum
    • Ramonell K, Berrocal-Lobo M, Koh S, Wan J, Edwards H, et al. (2005) Loss-of-function mutations in chitin responsive genes show increased susceptibility to the powdery mildew pathogen Erysiphe cichoracearum. Plant physiology 138: 1027.
    • (2005) Plant Physiology , vol.138 , pp. 1027
    • Ramonell, K.1    Berrocal-Lobo, M.2    Koh, S.3    Wan, J.4    Edwards, H.5
  • 20
    • 78650803161 scopus 로고    scopus 로고
    • ATL9, a RING Zinc Finger Protein with E3 Ubiquitin Ligase Activity Implicated in Chitin-and NADPH Oxidase-Mediated Defense Responses
    • Berrocal-Lobo M, Stone S, Yang X, Antico J, Callis J, et al. (2010) ATL9, a RING Zinc Finger Protein with E3 Ubiquitin Ligase Activity Implicated in Chitin-and NADPH Oxidase-Mediated Defense Responses. PLoS One 5: e14426.
    • (2010) PLoS One , vol.5
    • Berrocal-Lobo, M.1    Stone, S.2    Yang, X.3    Antico, J.4    Callis, J.5
  • 21
    • 77649296845 scopus 로고    scopus 로고
    • Cloning and molecular characterization of the potato RING finger protein gene StRFP1 and its function in potato broad-spectrum resistance against Phytophthora infestans
    • Ni X, Tian Z, Liu J, Song B, Xie C, (2010) Cloning and molecular characterization of the potato RING finger protein gene StRFP1 and its function in potato broad-spectrum resistance against Phytophthora infestans. Journal of plant physiology 167: 488-496.
    • (2010) Journal of Plant Physiology , vol.167 , pp. 488-496
    • Ni, X.1    Tian, Z.2    Liu, J.3    Song, B.4    Xie, C.5
  • 22
    • 58149237068 scopus 로고    scopus 로고
    • RING1 E3 ligase localizes to plasma membrane lipid rafts to trigger FB1 induced programmed cell death in Arabidopsis
    • Lin SS, Martin R, Mongrand S, Vandenabeele S, Chen KC, et al. (2008) RING1 E3 ligase localizes to plasma membrane lipid rafts to trigger FB1 induced programmed cell death in Arabidopsis. The Plant Journal 56: 550-561.
    • (2008) The Plant Journal , vol.56 , pp. 550-561
    • Lin, S.S.1    Martin, R.2    Mongrand, S.3    Vandenabeele, S.4    Chen, K.C.5
  • 23
    • 48149092795 scopus 로고    scopus 로고
    • Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses
    • Liu H, Zhang H, Yang Y, Li G, Wang X, et al. (2008) Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses. Plant molecular biology 68: 17-30.
    • (2008) Plant Molecular Biology , vol.68 , pp. 17-30
    • Liu, H.1    Zhang, H.2    Yang, Y.3    Li, G.4    Wang, X.5
  • 24
    • 72049127017 scopus 로고    scopus 로고
    • Ectopic expression of PtaRHE1, encoding a poplar RING-H2 protein with E3 ligase activity, alters plant development and induces defence-related responses
    • Mukoko Bopopi J, Vandeputte OM, Himanen K, Mol A, Vaessen Q, et al. (2010) Ectopic expression of PtaRHE1, encoding a poplar RING-H2 protein with E3 ligase activity, alters plant development and induces defence-related responses. Journal of experimental botany 61: 297.
    • (2010) Journal of Experimental Botany , vol.61 , pp. 297
    • Mukoko Bopopi, J.1    Vandeputte, O.M.2    Himanen, K.3    Mol, A.4    Vaessen, Q.5
  • 25
    • 0038344677 scopus 로고    scopus 로고
    • The over-expression of an alfalfa RING-H2 gene induces pleiotropic effects on plant growth and development
    • Karlowski WM, Hirsch AM, (2003) The over-expression of an alfalfa RING-H2 gene induces pleiotropic effects on plant growth and development. Plant molecular biology 52: 121-133.
    • (2003) Plant Molecular Biology , vol.52 , pp. 121-133
    • Karlowski, W.M.1    Hirsch, A.M.2
  • 27
    • 71949112527 scopus 로고    scopus 로고
    • CNI1/ATL31, a RING type ubiquitin ligase that functions in the carbon/nitrogen response for growth phase transition in Arabidopsis seedlings
    • Sato T, Maekawa S, Yasuda S, Sonoda Y, Katoh E, et al. (2009) CNI1/ATL31, a RING type ubiquitin ligase that functions in the carbon/nitrogen response for growth phase transition in Arabidopsis seedlings. The Plant Journal 60: 852-864.
    • (2009) The Plant Journal , vol.60 , pp. 852-864
    • Sato, T.1    Maekawa, S.2    Yasuda, S.3    Sonoda, Y.4    Katoh, E.5
  • 28
    • 34250830850 scopus 로고    scopus 로고
    • RING H2 type ubiquitin ligase EL5 is involved in root development through the maintenance of cell viability in rice
    • Koiwai H, Tagiri A, Katoh S, Katoh E, Ichikawa H, et al. (2007) RING H2 type ubiquitin ligase EL5 is involved in root development through the maintenance of cell viability in rice. The Plant Journal 51: 92-104.
    • (2007) The Plant Journal , vol.51 , pp. 92-104
    • Koiwai, H.1    Tagiri, A.2    Katoh, S.3    Katoh, E.4    Ichikawa, H.5
  • 29
    • 14044250209 scopus 로고    scopus 로고
    • Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis
    • Pagnussat GC, Yu HJ, Ngo QA, Rajani S, Mayalagu S, et al. (2005) Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis. Development 132: 603.
    • (2005) Development , vol.132 , pp. 603
    • Pagnussat, G.C.1    Yu, H.J.2    Ngo, Q.A.3    Rajani, S.4    Mayalagu, S.5
  • 30
    • 77953193652 scopus 로고    scopus 로고
    • Day Neutral Flowering represses Constans to prevent Arabidopsis flowering early in short days
    • Morris K, Thornber S, Codrai L, Richardson C, Craig A, et al. (2010) Day Neutral Flowering represses Constans to prevent Arabidopsis flowering early in short days. The Plant Cell Online 22: 1118.
    • (2010) The Plant Cell Online , vol.22 , pp. 1118
    • Morris, K.1    Thornber, S.2    Codrai, L.3    Richardson, C.4    Craig, A.5
  • 31
    • 70349325524 scopus 로고    scopus 로고
    • The evolutionary significance of ancient genome duplications
    • Van de Peer Y, Maere S, Meyer A, (2009) The evolutionary significance of ancient genome duplications. Nature Reviews Genetics 10: 725-732.
    • (2009) Nature Reviews Genetics , vol.10 , pp. 725-732
    • van de Peer, Y.1    Maere, S.2    Meyer, A.3
  • 32
    • 2942620598 scopus 로고    scopus 로고
    • The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana
    • Cannon SB, Mitra A, Baumgarten A, Young ND, May G, (2004) The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana. BMC plant biology 4: 10.
    • (2004) BMC Plant Biology , vol.4 , pp. 10
    • Cannon, S.B.1    Mitra, A.2    Baumgarten, A.3    Young, N.D.4    May, G.5
  • 35
    • 0035910270 scopus 로고    scopus 로고
    • Predicting transmembrane protein topology with a hidden markov model: application to complete genomes1
    • Krogh A, Larsson B, Von Heijne G, Sonnhammer ELL, (2001) Predicting transmembrane protein topology with a hidden markov model: application to complete genomes1. Journal of molecular biology 305: 567-580.
    • (2001) Journal of Molecular Biology , vol.305 , pp. 567-580
    • Krogh, A.1    Larsson, B.2    Von Heijne, G.3    Sonnhammer, E.L.L.4
  • 36
    • 0038012335 scopus 로고    scopus 로고
    • High precision NMR structure and function of the RING-H2 finger domain of EL5, a rice protein whose expression is increased upon exposure to pathogen-derived oligosaccharides
    • Katoh S, Hong C, Tsunoda Y, Murata K, Takai R, et al. (2003) High precision NMR structure and function of the RING-H2 finger domain of EL5, a rice protein whose expression is increased upon exposure to pathogen-derived oligosaccharides. Journal of Biological Chemistry 278: 15341.
    • (2003) Journal of Biological Chemistry , vol.278 , pp. 15341
    • Katoh, S.1    Hong, C.2    Tsunoda, Y.3    Murata, K.4    Takai, R.5
  • 37
    • 28844482169 scopus 로고    scopus 로고
    • Active site residues and amino acid specificity of the ubiquitin carrier protein-binding RING-H2 finger domain
    • Katoh S, Tsunoda Y, Murata K, Minami E, Katoh E, (2005) Active site residues and amino acid specificity of the ubiquitin carrier protein-binding RING-H2 finger domain. Journal of Biological Chemistry 280: 41015.
    • (2005) Journal of Biological Chemistry , vol.280 , pp. 41015
    • Katoh, S.1    Tsunoda, Y.2    Murata, K.3    Minami, E.4    Katoh, E.5
  • 38
    • 34547489084 scopus 로고    scopus 로고
    • Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
    • Talavera G, Castresana J, (2007) Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Systematic Biology 56: 564.
    • (2007) Systematic Biology , vol.56 , pp. 564
    • Talavera, G.1    Castresana, J.2
  • 39
    • 33749357831 scopus 로고    scopus 로고
    • Striking similarities in the genomic distribution of tandemly arrayed genes in Arabidopsis and rice
    • Rizzon C, Ponger L, Gaut BS, (2006) Striking similarities in the genomic distribution of tandemly arrayed genes in Arabidopsis and rice. PLoS Comput Biol 2: e115.
    • (2006) PLoS Comput Biol , vol.2
    • Rizzon, C.1    Ponger, L.2    Gaut, B.S.3
  • 40
    • 57749085421 scopus 로고    scopus 로고
    • Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli
    • Hanada K, Zou C, Lehti-Shiu MD, Shinozaki K, Shiu SH, (2008) Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli. Plant physiology 148: 993.
    • (2008) Plant Physiology , vol.148 , pp. 993
    • Hanada, K.1    Zou, C.2    Lehti-Shiu, M.D.3    Shinozaki, K.4    Shiu, S.H.5
  • 41
    • 77950363988 scopus 로고    scopus 로고
    • The RAD23 family provides an essential connection between the 26S proteasome and ubiquitylated proteins in Arabidopsis
    • Farmer LM, Book AJ, Lee KH, Lin YL, Fu H, et al. (2010) The RAD23 family provides an essential connection between the 26S proteasome and ubiquitylated proteins in Arabidopsis. The Plant Cell Online 22: 124.
    • (2010) The Plant Cell Online , vol.22 , pp. 124
    • Farmer, L.M.1    Book, A.J.2    Lee, K.H.3    Lin, Y.L.4    Fu, H.5
  • 42
    • 23144449583 scopus 로고    scopus 로고
    • Delivery of ubiquitinated substrates to protein-unfolding machines
    • Elsasser S, Finley D, (2005) Delivery of ubiquitinated substrates to protein-unfolding machines. Nature cell biology 7: 742-749.
    • (2005) Nature Cell Biology , vol.7 , pp. 742-749
    • Elsasser, S.1    Finley, D.2
  • 44
    • 0034645063 scopus 로고    scopus 로고
    • Identification of ubiquilin, a novel presenilin interactor that increases presenilin protein accumulation
    • Mah AL, Perry G, Smith MA, Monteiro MJ, (2000) Identification of ubiquilin, a novel presenilin interactor that increases presenilin protein accumulation. The Journal of Cell Biology 151: 847.
    • (2000) The Journal of Cell Biology , vol.151 , pp. 847
    • Mah, A.L.1    Perry, G.2    Smith, M.A.3    Monteiro, M.J.4
  • 45
    • 0036307754 scopus 로고    scopus 로고
    • The geometry of domain combination in proteins1
    • Bashton M, Chothia C, (2002) The geometry of domain combination in proteins1. Journal of molecular biology 315: 927-939.
    • (2002) Journal of Molecular Biology , vol.315 , pp. 927-939
    • Bashton, M.1    Chothia, C.2
  • 46
    • 0035816218 scopus 로고    scopus 로고
    • Domain combinations in archaeal, eubacterial and eukaryotic proteomes1
    • Apic G, Gough J, Teichmann SA, (2001) Domain combinations in archaeal, eubacterial and eukaryotic proteomes1. Journal of molecular biology 310: 311-325.
    • (2001) Journal of Molecular Biology , vol.310 , pp. 311-325
    • Apic, G.1    Gough, J.2    Teichmann, S.A.3
  • 47
    • 0034767547 scopus 로고    scopus 로고
    • Annotation transfer for genomics: measuring functional divergence in multi-domain proteins
    • Hegyi H, Gerstein M, (2001) Annotation transfer for genomics: measuring functional divergence in multi-domain proteins. Genome research 11: 1632.
    • (2001) Genome Research , vol.11 , pp. 1632
    • Hegyi, H.1    Gerstein, M.2
  • 48
    • 37849032457 scopus 로고    scopus 로고
    • The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants
    • Rensing SA, Lang D, Zimmer AD, Terry A, Salamov A, et al. (2008) The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science 319: 64.
    • (2008) Science , vol.319 , pp. 64
    • Rensing, S.A.1    Lang, D.2    Zimmer, A.D.3    Terry, A.4    Salamov, A.5
  • 49
    • 24944485529 scopus 로고    scopus 로고
    • Highly syntenic regions in the genomes of soybean, Medicago truncatula, and Arabidopsis thaliana
    • Mudge J, Cannon SB, Kalo P, Oldroyd GED, Roe BA, et al. (2005) Highly syntenic regions in the genomes of soybean, Medicago truncatula, and Arabidopsis thaliana. BMC plant biology 5: 15.
    • (2005) BMC Plant Biology , vol.5 , pp. 15
    • Mudge, J.1    Cannon, S.B.2    Kalo, P.3    Oldroyd, G.E.D.4    Roe, B.A.5
  • 50
    • 76749150030 scopus 로고    scopus 로고
    • Genome sequencing and analysis of the model grass Brachypodium distachyon
    • Vogel JP, Garvin DF, Mockler TC, Schmutz J, Rokhsar D, et al. (2010) Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature 463: 763-768.
    • (2010) Nature , vol.463 , pp. 763-768
    • Vogel, J.P.1    Garvin, D.F.2    Mockler, T.C.3    Schmutz, J.4    Rokhsar, D.5
  • 52
    • 34848886909 scopus 로고    scopus 로고
    • The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    • Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, et al. (2007) The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 449: 463-467.
    • (2007) Nature , vol.449 , pp. 463-467
    • Jaillon, O.1    Aury, J.M.2    Noel, B.3    Policriti, A.4    Clepet, C.5
  • 53
    • 0034671866 scopus 로고    scopus 로고
    • The origins of genomic duplications in Arabidopsis
    • Vision TJ, Brown DG, Tanksley SD, (2000) The origins of genomic duplications in Arabidopsis. Science 290: 2114.
    • (2000) Science , vol.290 , pp. 2114
    • Vision, T.J.1    Brown, D.G.2    Tanksley, S.D.3
  • 54
    • 1242316239 scopus 로고    scopus 로고
    • Tandem and segmental gene duplication and recombination in the evolution of plant disease resistance genes
    • Leister D, (2004) Tandem and segmental gene duplication and recombination in the evolution of plant disease resistance genes. Trends in Genetics 20: 116-122.
    • (2004) Trends in Genetics , vol.20 , pp. 116-122
    • Leister, D.1
  • 55
    • 0348013059 scopus 로고    scopus 로고
    • Does recombination shape the distribution and evolution of tandemly arrayed genes (TAGs) in the Arabidopsis thaliana genome?
    • Zhang L, Gaut BS, (2003) Does recombination shape the distribution and evolution of tandemly arrayed genes (TAGs) in the Arabidopsis thaliana genome? Genome research 13: 2533.
    • (2003) Genome Research , vol.13 , pp. 2533
    • Zhang, L.1    Gaut, B.S.2
  • 56
    • 68249119181 scopus 로고    scopus 로고
    • Evolution of stress-regulated gene expression in duplicate genes of Arabidopsis thaliana
    • Zou C, Lehti-Shiu MD, Thomashow M, Shiu SH, (2009) Evolution of stress-regulated gene expression in duplicate genes of Arabidopsis thaliana. PLoS Genet 5: e1000581.
    • (2009) PLoS Genet , vol.5
    • Zou, C.1    Lehti-Shiu, M.D.2    Thomashow, M.3    Shiu, S.H.4
  • 57
    • 0042091949 scopus 로고    scopus 로고
    • RNF5, a RING finger protein that regulates cell motility by targeting paxillin ubiquitination and altered localization
    • Didier C, Broday L, Bhoumik A, Israeli S, Takahashi S, et al. (2003) RNF5, a RING finger protein that regulates cell motility by targeting paxillin ubiquitination and altered localization. Molecular and cellular biology 23: 5331.
    • (2003) Molecular and Cellular Biology , vol.23 , pp. 5331
    • Didier, C.1    Broday, L.2    Bhoumik, A.3    Israeli, S.4    Takahashi, S.5
  • 59
    • 45049084568 scopus 로고    scopus 로고
    • Parkin is ubiquitinated by Nrdp1 and abrogates Nrdp1-induced oxidative stress
    • Yu F, Zhou J, (2008) Parkin is ubiquitinated by Nrdp1 and abrogates Nrdp1-induced oxidative stress. Neuroscience letters 440: 4-8.
    • (2008) Neuroscience Letters , vol.440 , pp. 4-8
    • Yu, F.1    Zhou, J.2
  • 61
    • 77953552229 scopus 로고    scopus 로고
    • RNF 122: A novel ubiquitin ligase associated with calcium-modulating cyclophilin ligand
    • Peng Z, Shi T, Ma D, (2010) RNF 122: A novel ubiquitin ligase associated with calcium-modulating cyclophilin ligand. BMC cell biology 11: 41.
    • (2010) BMC Cell Biology , vol.11 , pp. 41
    • Peng, Z.1    Shi, T.2    Ma, D.3
  • 62
    • 26644465534 scopus 로고    scopus 로고
    • Ubiquilin-1 regulates nicotine-induced up-regulation of neuronal nicotinic acetylcholine receptors
    • Ficklin MB, Zhao S, Feng G, (2005) Ubiquilin-1 regulates nicotine-induced up-regulation of neuronal nicotinic acetylcholine receptors. Journal of Biological Chemistry 280: 34088.
    • (2005) Journal of Biological Chemistry , vol.280 , pp. 34088
    • Ficklin, M.B.1    Zhao, S.2    Feng, G.3
  • 63
    • 78049407614 scopus 로고    scopus 로고
    • Mumps virus small hydrophobic protein targets ataxin-1 ubiquitin-like interacting protein (ubiquilin 4)
    • Woznik M, Rodner C, Lemon K, Rima B, Mankertz A, et al. (2010) Mumps virus small hydrophobic protein targets ataxin-1 ubiquitin-like interacting protein (ubiquilin 4). Journal of General Virology 91: 2773.
    • (2010) Journal of General Virology , vol.91 , pp. 2773
    • Woznik, M.1    Rodner, C.2    Lemon, K.3    Rima, B.4    Mankertz, A.5
  • 65
    • 0031743421 scopus 로고    scopus 로고
    • Profile hidden Markov models
    • Eddy SR, (1998) Profile hidden Markov models. Bioinformatics 14: 755.
    • (1998) Bioinformatics , vol.14 , pp. 755
    • Eddy, S.R.1
  • 66
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar RC, (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic acids research 32: 1792.
    • (2004) Nucleic Acids Research , vol.32 , pp. 1792
    • Edgar, R.C.1
  • 67
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ, (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic acids research 22: 4673.
    • (1994) Nucleic Acids Research , vol.22 , pp. 4673
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 68
    • 18744382506 scopus 로고    scopus 로고
    • ProtTest: selection of best-fit models of protein evolution
    • Abascal F, Zardoya R, Posada D, (2005) ProtTest: selection of best-fit models of protein evolution. Bioinformatics 21: 2104.
    • (2005) Bioinformatics , vol.21 , pp. 2104
    • Abascal, F.1    Zardoya, R.2    Posada, D.3
  • 69
    • 67649327176 scopus 로고    scopus 로고
    • FastTree: computing large minimum evolution trees with profiles instead of a distance matrix
    • Price MN, Dehal PS, Arkin AP, (2009) FastTree: computing large minimum evolution trees with profiles instead of a distance matrix. Molecular biology and evolution 26: 1641.
    • (2009) Molecular Biology and Evolution , vol.26 , pp. 1641
    • Price, M.N.1    Dehal, P.S.2    Arkin, A.P.3
  • 70
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M, Kumar S, (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Molecular biology and evolution 24: 1596.
    • (2007) Molecular Biology and Evolution , vol.24 , pp. 1596
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 71
    • 0032766857 scopus 로고    scopus 로고
    • Multiple comparisons of log-likelihoods with applications to phylogenetic inference
    • Shimodaira H, Hasegawa M, (1999) Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Molecular biology and evolution 16: 1114-1116.
    • (1999) Molecular Biology and Evolution , vol.16 , pp. 1114-1116
    • Shimodaira, H.1    Hasegawa, M.2
  • 72
    • 33845873289 scopus 로고    scopus 로고
    • Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation
    • Letunic I, Bork P, (2006) Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation. Bioinformatics 23: 127.
    • (2006) Bioinformatics , vol.23 , pp. 127
    • Letunic, I.1    Bork, P.2
  • 73
    • 79960004119 scopus 로고    scopus 로고
    • Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy
    • Nucleic acids research
    • Letunic I, Bork P, (2011) Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic acids research.
    • (2011)
    • Letunic, I.1    Bork, P.2
  • 74
    • 0031877016 scopus 로고    scopus 로고
    • Combining evidence using p-values: application to sequence homology searches
    • Bailey TL, Gribskov M, (1998) Combining evidence using p-values: application to sequence homology searches. Bioinformatics 14: 48.
    • (1998) Bioinformatics , vol.14 , pp. 48
    • Bailey, T.L.1    Gribskov, M.2
  • 75
    • 0032481104 scopus 로고    scopus 로고
    • The univector plasmid-fusion system, a method for rapid construction of recombinant DNA without restriction enzymes
    • Liu Q, Li MZ, Leibham D, Cortez D, Elledge SJ, (1998) The univector plasmid-fusion system, a method for rapid construction of recombinant DNA without restriction enzymes. Current biology 8: 1300-1309, S1301.
    • (1998) Current Biology , vol.8
    • Liu, Q.1    Li, M.Z.2    Leibham, D.3    Cortez, D.4    Elledge, S.J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.