-
1
-
-
0038047665
-
Hybrid origin of SIV in chimpanzees
-
DOI 10.1126/science.1080657
-
E. Bailes, F. Gao, F. Bibollet-Ruche, V. Courgnaud, M. Peeters, P.A. Marx, B.H. Hahn, and P.M. Sharp Hybrid origin of SIV in chimpanzees Science 300 2003 1713 (Pubitemid 36712560)
-
(2003)
Science
, vol.300
, Issue.5626
, pp. 1713
-
-
Bailes, E.1
Gao, F.2
Bibollet-Ruche, F.3
Courgnaud, V.4
Peeters, M.5
Marx, P.A.6
Hahn, B.H.7
Sharp, P.M.8
-
2
-
-
33750341578
-
The evolutionary dynamics of human endogenous retroviral families
-
DOI 10.1146/annurev.genom.7.080505.115700
-
N. Bannert, and R. Kurth The evolutionary dynamics of human endogenous retroviral families Annu. Rev. Genomics Hum. Genet. 7 2006 149 173 (Pubitemid 44627926)
-
(2006)
Annual Review of Genomics and Human Genetics
, vol.7
, pp. 149-173
-
-
Bannert, N.1
Kurth, R.2
-
3
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
J. Castresana Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis Mol. Biol. Evol. 17 2000 540 552 (Pubitemid 30210700)
-
(2000)
Molecular Biology and Evolution
, vol.17
, Issue.4
, pp. 540-552
-
-
Castresana, J.1
-
4
-
-
67649253072
-
HIV interactions with monocytes and dendritic cells: Viral latency and reservoirs
-
C.M. Coleman, and L. Wu HIV interactions with monocytes and dendritic cells: viral latency and reservoirs Retrovirology 6 2009 51
-
(2009)
Retrovirology
, vol.6
, pp. 51
-
-
Coleman, C.M.1
Wu, L.2
-
5
-
-
77950400643
-
Aicardi-Goutieres syndrome and related phenotypes: Linking nucleic acid metabolism with autoimmunity
-
Y.J. Crow, and J. Rehwinkel Aicardi-Goutieres syndrome and related phenotypes: linking nucleic acid metabolism with autoimmunity Hum. Mol. Genet. 18 R2 2009 R130 R136
-
(2009)
Hum. Mol. Genet.
, vol.18
, Issue.R2
-
-
Crow, Y.J.1
Rehwinkel, J.2
-
6
-
-
33746581694
-
Mutations in the gene encoding the 3′-5′ DNA exonuclease TREX1 cause Aicardi-Goutieres syndrome at the AGS1 locus
-
DOI 10.1038/ng1845, PII NG1845
-
Y.J. Crow, B.E. Hayward, R. Parmar, P. Robins, A. Leitch, M. Ali, D.N. Black, H. van Bokhoven, H.G. Brunner, and B.C. Hamel Mutations in the gene encoding the 3′-5′ DNA exonuclease TREX1 cause Aicardi-Goutires syndrome at the AGS1 locus Nat. Genet. 38 2006 917 920 (Pubitemid 44141660)
-
(2006)
Nature Genetics
, vol.38
, Issue.8
, pp. 917-920
-
-
Crow, Y.J.1
Hayward, B.E.2
Parmar, R.3
Robins, P.4
Leitch, A.5
Ali, M.6
Black, D.N.7
Van Bokhoven, H.8
Brunner, H.G.9
Hamel, B.C.10
Corry, P.C.11
Cowan, F.M.12
Frints, S.G.13
Klepper, J.14
Livingston, J.H.15
Lynch, S.A.16
Massey, R.F.17
Meritet, J.F.18
Michaud, J.L.19
Ponsot, G.20
Voit, T.21
Lebon, P.22
Bonthron, D.T.23
Jackson, A.P.24
Barnes, D.E.25
Lindahl, T.26
more..
-
7
-
-
33746522835
-
Mutations in genes encoding ribonuclease H2 subunits cause Aicardi-Goutieres syndrome and mimic congenital viral brain infection
-
DOI 10.1038/ng1842, PII NG1842
-
Y.J. Crow, A. Leitch, B.E. Hayward, A. Garner, R. Parmar, E. Griffith, M. Ali, C. Semple, J. Aicardi, and R. Babul-Hirji Mutations in genes encoding ribonuclease H2 subunits cause Aicardi-Goutires syndrome and mimic congenital viral brain infection Nat. Genet. 38 2006 910 916 (Pubitemid 44141659)
-
(2006)
Nature Genetics
, vol.38
, Issue.8
, pp. 910-916
-
-
Crow, Y.J.1
Leitch, A.2
Hayward, B.E.3
Garner, A.4
Parmar, R.5
Griffith, E.6
Ali, M.7
Semple, C.8
Aicardi, J.9
Babul-Hirji, R.10
Baumann, C.11
Baxter, P.12
Bertini, E.13
Chandler, K.E.14
Chitayat, D.15
Cau, D.16
Dery, C.17
Fazzi, E.18
Goizet, C.19
King, M.D.20
Klepper, J.21
Lacombe, D.22
Lanzi, G.23
Lyall, H.24
Martinez-Frias, M.L.25
Mathieu, M.26
McKeown, C.27
Monier, A.28
Oade, Y.29
Quarrell, O.W.30
Rittey, C.D.31
Rogers, R.C.32
Sanchis, A.33
Stephenson, J.B.P.34
Tacke, U.35
Till, M.36
Tolmie, J.L.37
Tomlin, P.38
Voit, T.39
Weschke, B.40
Woods, C.G.41
Lebon, P.42
Bonthron, D.T.43
Ponting, C.P.44
Jackson, A.P.45
more..
-
8
-
-
77950396519
-
Familial Aicardi-Goutires syndrome due to SAMHD1 mutations is associated with chronic arthropathy and contractures
-
R.C. Dale, H. Gornall, D. Singh-Grewal, M. Alcausin, G.I. Rice, and Y.J. Crow Familial Aicardi-Goutires syndrome due to SAMHD1 mutations is associated with chronic arthropathy and contractures Am. J. Med. Genet. A. 152A 2010 938 942
-
(2010)
Am. J. Med. Genet. A.
, vol.152 A
, pp. 938-942
-
-
Dale, R.C.1
Gornall, H.2
Singh-Grewal, D.3
Alcausin, M.4
Rice, G.I.5
Crow, Y.J.6
-
9
-
-
78651387934
-
The interface between the innate interferon response and expression of host retroviral restriction factors
-
R.N. Douville, and J. Hiscott The interface between the innate interferon response and expression of host retroviral restriction factors Cytokine 52 2010 108 115
-
(2010)
Cytokine
, vol.52
, pp. 108-115
-
-
Douville, R.N.1
Hiscott, J.2
-
10
-
-
77649118434
-
Paleovirology - Modern consequences of ancient viruses
-
M. Emerman, and H.S. Malik Paleovirology - modern consequences of ancient viruses PLoS Biol. 8 2010 e1000301
-
(2010)
PLoS Biol.
, vol.8
, pp. 1000301
-
-
Emerman, M.1
Malik, H.S.2
-
11
-
-
80053490751
-
Automated genome-wide visual profiling of cellular proteins involved in HIV infection
-
A. Genovesio, Y.J. Kwon, M.P. Windisch, N.Y. Kim, S.Y. Choi, H.C. Kim, S. Jung, F. Mammano, V. Perrin, and A.S. Boese Automated genome-wide visual profiling of cellular proteins involved in HIV infection J. Biomol. Screen. 16 2011 945 958
-
(2011)
J. Biomol. Screen.
, vol.16
, pp. 945-958
-
-
Genovesio, A.1
Kwon, Y.J.2
Windisch, M.P.3
Kim, N.Y.4
Choi, S.Y.5
Kim, H.C.6
Jung, S.7
Mammano, F.8
Perrin, V.9
Boese, A.S.10
-
12
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
-
S. Guindon, J.F. Dufayard, V. Lefort, M. Anisimova, W. Hordijk, and O. Gascuel New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0 Syst. Biol. 59 2010 307 321
-
(2010)
Syst. Biol.
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
Gascuel, O.6
-
13
-
-
0038681901
-
DNA deamination mediates innate immunity to retroviral infection
-
DOI 10.1016/S0092-8674(03)00423-9
-
R.S. Harris, K.N. Bishop, A.M. Sheehy, H.M. Craig, S.K. Petersen-Mahrt, I.N. Watt, M.S. Neuberger, and M.H. Malim DNA deamination mediates innate immunity to retroviral infection Cell 113 2003 803 809 (Pubitemid 36724943)
-
(2003)
Cell
, vol.113
, Issue.6
, pp. 803-809
-
-
Harris, R.S.1
Bishop, K.N.2
Sheehy, A.M.3
Craig, H.M.4
Petersen-Mahrt, S.K.5
Watt, I.N.6
Neuberger, M.S.7
Malim, M.H.8
-
14
-
-
0024974130
-
SIV adaptation to human cells
-
V.M. Hirsch, P. Edmondson, M. Murphey-Corb, B. Arbeille, P.R. Johnson, and J.I. Mullins SIV adaptation to human cells Nature 341 1989 573 574
-
(1989)
Nature
, vol.341
, pp. 573-574
-
-
Hirsch, V.M.1
Edmondson, P.2
Murphey-Corb, M.3
Arbeille, B.4
Johnson, P.R.5
Mullins, J.I.6
-
15
-
-
79959858243
-
Vpx relieves inhibition of HIV-1 infection of macrophages mediated by the SAMHD1 protein
-
K. Hrecka, C. Hao, M. Gierszewska, S.K. Swanson, M. Kesik-Brodacka, S. Srivastava, L. Florens, M.P. Washburn, and J. Skowronski Vpx relieves inhibition of HIV-1 infection of macrophages mediated by the SAMHD1 protein Nature 474 2011 658 661
-
(2011)
Nature
, vol.474
, pp. 658-661
-
-
Hrecka, K.1
Hao, C.2
Gierszewska, M.3
Swanson, S.K.4
Kesik-Brodacka, M.5
Srivastava, S.6
Florens, L.7
Washburn, M.P.8
Skowronski, J.9
-
16
-
-
31144434399
-
Transduction of nondividing human macrophages with gammaretrovirus- derived vectors
-
DOI 10.1128/JVI.80.3.1152-1159.2006
-
L. Jarrosson-Wuilleme, C. Goujon, J. Bernaud, D. Rigal, J.L. Darlix, and A. Cimarelli Transduction of nondividing human macrophages with gammaretrovirus-derived vectors J. Virol. 80 2006 1152 1159 (Pubitemid 43134072)
-
(2006)
Journal of Virology
, vol.80
, Issue.3
, pp. 1152-1159
-
-
Jarrosson-Wuilleme, L.1
Goujon, C.2
Bernaud, J.3
Rigal, D.4
Darlix, J.-L.5
Cimarelli, A.6
-
17
-
-
34447340466
-
Discovery and analysis of the first endogenous lentivirus
-
DOI 10.1073/pnas.0700471104
-
A. Katzourakis, M. Tristem, O.G. Pybus, and R.J. Gifford Discovery and analysis of the first endogenous lentivirus Proc. Natl. Acad. Sci. USA 104 2007 6261 6265 (Pubitemid 47186082)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.15
, pp. 6261-6265
-
-
Katzourakis, A.1
Tristem, M.2
Pybus, O.G.3
Gifford, R.J.4
-
18
-
-
67651092299
-
A cellular restriction dictates the permissivity of nondividing monocytes/macrophages to lentivirus and gammaretrovirus infection
-
R. Kaushik, X. Zhu, R. Stranska, Y. Wu, and M. Stevenson A cellular restriction dictates the permissivity of nondividing monocytes/macrophages to lentivirus and gammaretrovirus infection Cell Host Microbe 6 2009 68 80
-
(2009)
Cell Host Microbe
, vol.6
, pp. 68-80
-
-
Kaushik, R.1
Zhu, X.2
Stranska, R.3
Wu, Y.4
Stevenson, M.5
-
19
-
-
58749086368
-
Identification of a RELIK orthologue in the European hare (Lepus europaeus) reveals a minimum age of 12 million years for the lagomorph lentiviruses
-
Z. Keckesova, L.M. Ylinen, G.J. Towers, R.J. Gifford, and A. Katzourakis Identification of a RELIK orthologue in the European hare (Lepus europaeus) reveals a minimum age of 12 million years for the lagomorph lentiviruses Virology 384 2009 7 11
-
(2009)
Virology
, vol.384
, pp. 7-11
-
-
Keckesova, Z.1
Ylinen, L.M.2
Towers, G.J.3
Gifford, R.J.4
Katzourakis, A.5
-
20
-
-
33745059199
-
Chimpanzee reservoirs of pandemic and nonpandemic HIV-1
-
DOI 10.1126/science.1126531
-
B.F. Keele, F. Van Heuverswyn, Y. Li, E. Bailes, J. Takehisa, M.L. Santiago, F. Bibollet-Ruche, Y. Chen, L.V. Wain, and F. Liegeois Chimpanzee reservoirs of pandemic and nonpandemic HIV-1 Science 313 2006 523 526 (Pubitemid 44148457)
-
(2006)
Science
, vol.313
, Issue.5786
, pp. 523-526
-
-
Keele, B.F.1
Van Heuverswyn, F.2
Li, Y.3
Bailes, E.4
Takehisa, J.5
Santiago, M.L.6
Bibollet-Ruche, F.7
Chen, Y.8
Wain, L.V.9
Liegeois, F.10
Loul, S.11
Ngole, E.M.12
Bienvenue, Y.13
Delaporte, E.14
Brookfield, J.F.Y.15
Sharp, P.M.16
Shaw, G.M.17
Peeters, M.18
Hahn, B.H.19
-
21
-
-
67749145263
-
Increased mortality and AIDS-like immunopathology in wild chimpanzees infected with SIVcpz
-
B.F. Keele, J.H. Jones, K.A. Terio, J.D. Estes, R.S. Rudicell, M.L. Wilson, Y. Li, G.H. Learn, T.M. Beasley, and J. Schumacher-Stankey Increased mortality and AIDS-like immunopathology in wild chimpanzees infected with SIVcpz Nature 460 2009 515 519
-
(2009)
Nature
, vol.460
, pp. 515-519
-
-
Keele, B.F.1
Jones, J.H.2
Terio, K.A.3
Estes, J.D.4
Rudicell, R.S.5
Wilson, M.L.6
Li, Y.7
Learn, G.H.8
Beasley, T.M.9
Schumacher-Stankey, J.10
-
22
-
-
67749132526
-
Id3 is a direct transcriptional target of Pax7 in quiescent satellite cells
-
D. Kumar, J.L. Shadrach, A.J. Wagers, and A.B. Lassar Id3 is a direct transcriptional target of Pax7 in quiescent satellite cells Mol. Biol. Cell 20 2009 3170 3177
-
(2009)
Mol. Biol. Cell
, vol.20
, pp. 3170-3177
-
-
Kumar, D.1
Shadrach, J.L.2
Wagers, A.J.3
Lassar, A.B.4
-
23
-
-
79959843617
-
SAMHD1 is the dendritic- and myeloid-cell-specific HIV-1 restriction factor counteracted by Vpx
-
N. Laguette, B. Sobhian, N. Casartelli, M. Ringeard, C. Chable-Bessia, E. Ségéral, A. Yatim, S. Emiliani, O. Schwartz, and M. Benkirane SAMHD1 is the dendritic- and myeloid-cell-specific HIV-1 restriction factor counteracted by Vpx Nature 474 2011 654 657
-
(2011)
Nature
, vol.474
, pp. 654-657
-
-
Laguette, N.1
Sobhian, B.2
Casartelli, N.3
Ringeard, M.4
Chable-Bessia, C.5
Ségéral, E.6
Yatim, A.7
Emiliani, S.8
Schwartz, O.9
Benkirane, M.10
-
24
-
-
78650493648
-
A phylogenetic model for investigating correlated evolution of substitution rates and continuous phenotypic characters
-
N. Lartillot, and R. Poujol A phylogenetic model for investigating correlated evolution of substitution rates and continuous phenotypic characters Mol. Biol. Evol. 28 2011 729 744
-
(2011)
Mol. Biol. Evol.
, vol.28
, pp. 729-744
-
-
Lartillot, N.1
Poujol, R.2
-
25
-
-
0038312916
-
Tracing the origin and history of the HIV-2 epidemic
-
DOI 10.1073/pnas.0936469100
-
P. Lemey, O.G. Pybus, B. Wang, N.K. Saksena, M. Salemi, and A.M. Vandamme Tracing the origin and history of the HIV-2 epidemic Proc. Natl. Acad. Sci. USA 100 2003 6588 6592 (Pubitemid 36666625)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.11
, pp. 6588-6592
-
-
Lemey, P.1
Pybus, O.G.2
Bin, W.3
Saksena, N.K.4
Salemi, M.5
Vandamme, A.-M.6
-
26
-
-
84857347109
-
The ability of primate lentiviruses to degrade the monocyte restriction factor SAMHD1 preceded the birth of the viral accessory protein Vpx
-
10.1016/j.chom.2012.01.004 in press. Published online January 26, 2012
-
E.S. Lim, O.I. Fregoso, C.O. McCoy, F.A. Matsen, H.S. Malik, and M. Emerman The ability of primate lentiviruses to degrade the monocyte restriction factor SAMHD1 preceded the birth of the viral accessory protein Vpx Cell Host Microbe 11 2012 10.1016/j.chom.2012.01.004 in press. Published online January 26, 2012
-
(2012)
Cell Host Microbe
, vol.11
-
-
Lim, E.S.1
Fregoso, O.I.2
McCoy, C.O.3
Matsen, F.A.4
Malik, H.S.5
Emerman, M.6
-
27
-
-
0038107587
-
Species-specific exclusion of APOBEC3G from HIV-1 virions by Vif
-
DOI 10.1016/S0092-8674(03)00515-4
-
R. Mariani, D. Chen, B. Schröfelbauer, F. Navarro, R. König, B. Bollman, C. Münk, H. Nymark-McMahon, and N.R. Landau Species-specific exclusion of APOBEC3G from HIV-1 virions by Vif Cell 114 2003 21 31 (Pubitemid 36859838)
-
(2003)
Cell
, vol.114
, Issue.1
, pp. 21-31
-
-
Mariani, R.1
Chen, D.2
Schrofelbauer, B.3
Navarro, F.4
Konig, R.5
Bollman, B.6
Munk, C.7
Nymark-McMahon, H.8
Landau, N.R.9
-
28
-
-
0033538461
-
Identification and expression of the TREX1 and TREX2 cDNA sequences encoding mammalian 3′ - >5′ exonucleases
-
D.J. Mazur, and F.W. Perrino Identification and expression of the TREX1 and TREX2 cDNA sequences encoding mammalian 3′ - >5′ exonucleases J. Biol. Chem. 274 1999 19655 19660
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 19655-19660
-
-
Mazur, D.J.1
Perrino, F.W.2
-
29
-
-
61449243774
-
Species-specific activity of HIV-1 Vpu and positive selection of tetherin transmembrane domain variants
-
M.W. McNatt, T. Zang, T. Hatziioannou, M. Bartlett, I.B. Fofana, W.E. Johnson, S.J. Neil, and P.D. Bieniasz Species-specific activity of HIV-1 Vpu and positive selection of tetherin transmembrane domain variants PLoS Pathog. 5 2009 e1000300
-
(2009)
PLoS Pathog.
, vol.5
, pp. 1000300
-
-
McNatt, M.W.1
Zang, T.2
Hatziioannou, T.3
Bartlett, M.4
Fofana, I.B.5
Johnson, W.E.6
Neil, S.J.7
Bieniasz, P.D.8
-
30
-
-
0034879246
-
Simian immunodeficiency virus in which nef and U3 sequences do not overlap replicates efficiently in vitro and in vivo in rhesus macaques
-
DOI 10.1128/JVI.75.17.8137-8146.2001
-
J. Münch, N. Adam, N. Finze, N. Stolte, C. Stahl-Hennig, D. Fuchs, P. Ten Haaft, J.L. Heeney, and F. Kirchhoff Simian immunodeficiency virus in which nef and U3 sequences do not overlap replicates efficiently in vitro and in vivo in rhesus macaques J. Virol. 75 2001 8137 8146 (Pubitemid 32743686)
-
(2001)
Journal of Virology
, vol.75
, Issue.17
, pp. 8137-8146
-
-
Munch, J.1
Adam, N.2
Finze, N.3
Stolte, N.4
Stahl-Hennig, C.5
Fuchs, D.6
Haaft, P.T.7
Heeney, J.L.8
Kirchhoff, F.9
-
31
-
-
0347381286
-
Immunoaffinity Purification of Mammalian Protein Complexes
-
DOI 10.1016/S0076-6879(03)70037-8
-
Y. Nakatani, and V. Ogryzko Immunoaffinity purification of mammalian protein complexes Methods Enzymol. 370 2003 430 444 (Pubitemid 37542800)
-
(2003)
Methods in Enzymology
, vol.370
, pp. 430-444
-
-
Nakatani, Y.1
Ogryzko, V.2
-
32
-
-
38549095979
-
Tetherin inhibits retrovirus release and is antagonized by HIV-1 Vpu
-
DOI 10.1038/nature06553, PII NATURE06553
-
S.J. Neil, T. Zang, and P.D. Bieniasz Tetherin inhibits retrovirus release and is antagonized by HIV-1 Vpu Nature 451 2008 425 430 (Pubitemid 351158893)
-
(2008)
Nature
, vol.451
, Issue.7177
, pp. 425-430
-
-
Neil, S.J.D.1
Zang, T.2
Bieniasz, P.D.3
-
33
-
-
0031972161
-
Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene
-
R. Nielsen, and Z. Yang Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene Genetics 148 1998 929 936 (Pubitemid 28169008)
-
(1998)
Genetics
, vol.148
, Issue.3
, pp. 929-936
-
-
Nielsen, R.1
Yang, Z.2
-
34
-
-
70549093003
-
Evolutionary trajectories of primate genes involved in HIV pathogenesis
-
M. Ortiz, N. Guex, E. Patin, O. Martin, I. Xenarios, A. Ciuffi, L. Quintana-Murci, and A. Telenti Evolutionary trajectories of primate genes involved in HIV pathogenesis Mol. Biol. Evol. 26 2009 2865 2875
-
(2009)
Mol. Biol. Evol.
, vol.26
, pp. 2865-2875
-
-
Ortiz, M.1
Guex, N.2
Patin, E.3
Martin, O.4
Xenarios, I.5
Ciuffi, A.6
Quintana-Murci, L.7
Telenti, A.8
-
35
-
-
80053377900
-
Paleovirology - Ghosts and gifts of viruses past
-
M.R. Patel, M. Emerman, and H.S. Malik Paleovirology - Ghosts and gifts of viruses past Curr Opin Virol 1 2011 304 309
-
(2011)
Curr Opin Virol
, vol.1
, pp. 304-309
-
-
Patel, M.R.1
Emerman, M.2
Malik, H.S.3
-
36
-
-
79953755778
-
A molecular phylogeny of living primates
-
P. Perelman, W.E. Johnson, C. Roos, H.N. Seuánez, J.E. Horvath, M.A. Moreira, B. Kessing, J. Pontius, M. Roelke, and Y. Rumpler A molecular phylogeny of living primates PLoS Genet. 7 2011 e1001342
-
(2011)
PLoS Genet.
, vol.7
, pp. 1001342
-
-
Perelman, P.1
Johnson, W.E.2
Roos, C.3
Seuánez, H.N.4
Horvath, J.E.5
Moreira, M.A.6
Kessing, B.7
Pontius, J.8
Roelke, M.9
Rumpler, Y.10
-
37
-
-
39749111875
-
OrthoMaM: A database of orthologous genomic markers for placental mammal phylogenetics
-
V. Ranwez, F. Delsuc, S. Ranwez, K. Belkhir, M.K. Tilak, and E.J. Douzery OrthoMaM: a database of orthologous genomic markers for placental mammal phylogenetics BMC Evol. Biol. 7 2007 241
-
(2007)
BMC Evol. Biol.
, vol.7
, pp. 241
-
-
Ranwez, V.1
Delsuc, F.2
Ranwez, S.3
Belkhir, K.4
Tilak, M.K.5
Douzery, E.J.6
-
38
-
-
67649861901
-
Mutations involved in Aicardi-Goutires syndrome implicate SAMHD1 as regulator of the innate immune response
-
G.I. Rice, J. Bond, A. Asipu, R.L. Brunette, I.W. Manfield, I.M. Carr, J.C. Fuller, R.M. Jackson, T. Lamb, and T.A. Briggs Mutations involved in Aicardi-Goutires syndrome implicate SAMHD1 as regulator of the innate immune response Nat. Genet. 41 2009 829 832
-
(2009)
Nat. Genet.
, vol.41
, pp. 829-832
-
-
Rice, G.I.1
Bond, J.2
Asipu, A.3
Brunette, R.L.4
Manfield, I.W.5
Carr, I.M.6
Fuller, J.C.7
Jackson, R.M.8
Lamb, T.9
Briggs, T.A.10
-
39
-
-
71749105713
-
Tetherin-driven adaptation of Vpu and Nef function and the evolution of pandemic and nonpandemic HIV-1 strains
-
D. Sauter, M. Schindler, A. Specht, W.N. Landford, J. Münch, K.A. Kim, J. Votteler, U. Schubert, F. Bibollet-Ruche, and B.F. Keele Tetherin-driven adaptation of Vpu and Nef function and the evolution of pandemic and nonpandemic HIV-1 strains Cell Host Microbe 6 2009 409 421
-
(2009)
Cell Host Microbe
, vol.6
, pp. 409-421
-
-
Sauter, D.1
Schindler, M.2
Specht, A.3
Landford, W.N.4
Münch, J.5
Kim, K.A.6
Votteler, J.7
Schubert, U.8
Bibollet-Ruche, F.9
Keele, B.F.10
-
40
-
-
19344362934
-
Ancient adaptive evolution of the primate antiviral DNA-editing enzyme APOBEC3G
-
S.L. Sawyer, M. Emerman, and H.S. Malik Ancient adaptive evolution of the primate antiviral DNA-editing enzyme APOBEC3G PLoS Biol. 2 2004 E275
-
(2004)
PLoS Biol.
, vol.2
, pp. 275
-
-
Sawyer, S.L.1
Emerman, M.2
Malik, H.S.3
-
41
-
-
14544281087
-
Positive selection of primate TRIM5α identifies a critical species-specific retroviral restriction domain
-
DOI 10.1073/pnas.0409853102
-
S.L. Sawyer, L.I. Wu, M. Emerman, and H.S. Malik Positive selection of primate TRIM5alpha identifies a critical species-specific retroviral restriction domain Proc. Natl. Acad. Sci. USA 102 2005 2832 2837 (Pubitemid 40299877)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.8
, pp. 2832-2837
-
-
Sawyer, S.L.1
Wu, L.I.2
Emerman, M.3
Malik, H.S.4
-
42
-
-
0037043699
-
Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein
-
A.M. Sheehy, N.C. Gaddis, J.D. Choi, and M.H. Malim Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein Nature 418 2002 646 650
-
(2002)
Nature
, vol.418
, pp. 646-650
-
-
Sheehy, A.M.1
Gaddis, N.C.2
Choi, J.D.3
Malim, M.H.4
-
43
-
-
10944259799
-
The B30.2(SPRY) domain of the retroviral restriction factor TRIM5α exhibits lineage-specific length and sequence variation in primates
-
DOI 10.1128/JVI.79.10.6111-6121.2005
-
B. Song, B. Gold, C. O'Huigin, H. Javanbakht, X. Li, M. Stremlau, C. Winkler, M. Dean, and J. Sodroski The B30.2(SPRY) domain of the retroviral restriction factor TRIM5alpha exhibits lineage-specific length and sequence variation in primates J. Virol. 79 2005 6111 6121 (Pubitemid 40617216)
-
(2005)
Journal of Virology
, vol.79
, Issue.10
, pp. 6111-6121
-
-
Song, B.1
Gold, B.2
O'hUigin, C.3
Javanbakht, H.4
Li, X.5
Stremlau, M.6
Winkler, C.7
Dean, M.8
Sodroski, J.9
-
44
-
-
33750403801
-
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
DOI 10.1093/bioinformatics/btl446
-
A. Stamatakis RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models Bioinformatics 22 2006 2688 2690 (Pubitemid 44642609)
-
(2006)
Bioinformatics
, vol.22
, Issue.21
, pp. 2688-2690
-
-
Stamatakis, A.1
-
45
-
-
49549100511
-
Trex1 prevents cell-intrinsic initiation of autoimmunity
-
D.B. Stetson, J.S. Ko, T. Heidmann, and R. Medzhitov Trex1 prevents cell-intrinsic initiation of autoimmunity Cell 134 2008 587 598
-
(2008)
Cell
, vol.134
, pp. 587-598
-
-
Stetson, D.B.1
Ko, J.S.2
Heidmann, T.3
Medzhitov, R.4
-
46
-
-
70350738592
-
Human cellular restriction factors that target HIV-1 replication
-
K. Strebel, J. Luban, and K.T. Jeang Human cellular restriction factors that target HIV-1 replication BMC Med. 7 2009 48
-
(2009)
BMC Med.
, vol.7
, pp. 48
-
-
Strebel, K.1
Luban, J.2
Jeang, K.T.3
-
47
-
-
1542288934
-
The cytoplasmic body component TRIM5α restricts HIV-1 infection in Old World monkeys
-
DOI 10.1038/nature02343
-
M. Stremlau, C.M. Owens, M.J. Perron, M. Kiessling, P. Autissier, and J. Sodroski The cytoplasmic body component TRIM5alpha restricts HIV-1 infection in Old World monkeys Nature 427 2004 848 853 (Pubitemid 38297747)
-
(2004)
Nature
, vol.427
, Issue.6977
, pp. 848-853
-
-
Stremlau, M.1
Owens, C.M.2
Perron, M.J.3
Kiessling, M.4
Autissier, P.5
Sodroski, J.6
-
48
-
-
13944259674
-
Species-specific variation in the B30.2(SPRY) domain of TRIM5α determines the potency of human immunodeficiency virus restriction
-
DOI 10.1128/JVI.79.5.3139-3145.2005
-
M. Stremlau, M. Perron, S. Welikala, and J. Sodroski Species-specific variation in the B30.2(SPRY) domain of TRIM5alpha determines the potency of human immunodeficiency virus restriction J. Virol. 79 2005 3139 3145 (Pubitemid 40270592)
-
(2005)
Journal of Virology
, vol.79
, Issue.5
, pp. 3139-3145
-
-
Stremlau, M.1
Perron, M.2
Welikala, S.3
Sodroski, J.4
-
49
-
-
33645794537
-
Specific recognition and accelerated uncoating of retroviral capsids by the TRIM5alpha restriction factor
-
M. Stremlau, M. Perron, M. Lee, Y. Li, B. Song, H. Javanbakht, F. Diaz-Griffero, D.J. Anderson, W.I. Sundquist, and J. Sodroski Specific recognition and accelerated uncoating of retroviral capsids by the TRIM5alpha restriction factor Proc. Natl. Acad. Sci. USA 103 2006 5514 5519
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 5514-5519
-
-
Stremlau, M.1
Perron, M.2
Lee, M.3
Li, Y.4
Song, B.5
Javanbakht, H.6
Diaz-Griffero, F.7
Anderson, D.J.8
Sundquist, W.I.9
Sodroski, J.10
-
50
-
-
78650235515
-
Tracking a century of global expansion and evolution of HIV to drive understanding and to combat disease
-
D.M. Tebit, and E.J. Arts Tracking a century of global expansion and evolution of HIV to drive understanding and to combat disease Lancet Infect. Dis. 11 2011 45 56
-
(2011)
Lancet Infect. Dis.
, vol.11
, pp. 45-56
-
-
Tebit, D.M.1
Arts, E.J.2
-
51
-
-
0025029028
-
Origin of vpx in lentiviruses
-
M. Tristem, C. Marshall, A. Karpas, J. Petrik, and F. Hill Origin of vpx in lentiviruses Nature 347 1990 341 342 (Pubitemid 20332301)
-
(1990)
Nature
, vol.347
, Issue.6291
, pp. 341-342
-
-
Tristem, M.1
Marshall, C.2
Karpas, A.3
Petrik, J.4
Hill, F.5
-
52
-
-
0026739866
-
Evolution of the primate lentiviruses: Evidence from vpx and vpr
-
M. Tristem, C. Marshall, A. Karpas, and F. Hill Evolution of the primate lentiviruses: evidence from vpx and vpr EMBO J. 11 1992 3405 3412
-
(1992)
EMBO J.
, vol.11
, pp. 3405-3412
-
-
Tristem, M.1
Marshall, C.2
Karpas, A.3
Hill, F.4
-
53
-
-
67049119333
-
Dating the age of the SIV lineages that gave rise to HIV-1 and HIV-2
-
J.O. Wertheim, and M. Worobey Dating the age of the SIV lineages that gave rise to HIV-1 and HIV-2 PLoS Comput. Biol. 5 2009 e1000377
-
(2009)
PLoS Comput. Biol.
, vol.5
, pp. 1000377
-
-
Wertheim, J.O.1
Worobey, M.2
-
54
-
-
77958114725
-
The cytosolic exonuclease TREX1 inhibits the innate immune response to human immunodeficiency virus type 1
-
N. Yan, A.D. Regalado-Magdos, B. Stiggelbout, M.A. Lee-Kirsch, and J. Lieberman The cytosolic exonuclease TREX1 inhibits the innate immune response to human immunodeficiency virus type 1 Nat. Immunol. 11 2010 1005 1013
-
(2010)
Nat. Immunol.
, vol.11
, pp. 1005-1013
-
-
Yan, N.1
Regalado-Magdos, A.D.2
Stiggelbout, B.3
Lee-Kirsch, M.A.4
Lieberman, J.5
-
55
-
-
0031897964
-
Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution
-
Z. Yang Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution Mol. Biol. Evol. 15 1998 568 573 (Pubitemid 28194621)
-
(1998)
Molecular Biology and Evolution
, vol.15
, Issue.5
, pp. 568-573
-
-
Yang, Z.1
-
56
-
-
34547803197
-
PAML 4: Phylogenetic analysis by maximum likelihood
-
DOI 10.1093/molbev/msm088
-
Z. Yang PAML 4: phylogenetic analysis by maximum likelihood Mol. Biol. Evol. 24 2007 1586 1591 (Pubitemid 47236688)
-
(2007)
Molecular Biology and Evolution
, vol.24
, Issue.8
, pp. 1586-1591
-
-
Yang, Z.1
-
57
-
-
0031960185
-
Synonymous and nonsynonymous rate variation in nuclear genes of mammals
-
DOI 10.1007/PL00006320
-
Z. Yang, and R. Nielsen Synonymous and nonsynonymous rate variation in nuclear genes of mammals J. Mol. Evol. 46 1998 409 418 (Pubitemid 28164945)
-
(1998)
Journal of Molecular Evolution
, vol.46
, Issue.4
, pp. 409-418
-
-
Yang, Z.1
Nielsen, R.2
-
58
-
-
0036270185
-
Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages
-
Z. Yang, and R. Nielsen Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages Mol. Biol. Evol. 19 2002 908 917 (Pubitemid 34602960)
-
(2002)
Molecular Biology and Evolution
, vol.19
, Issue.6
, pp. 908-917
-
-
Yang, Z.1
Nielsent, R.2
-
59
-
-
0034097381
-
Codon-substitution models for heterogeneous selection pressure at amino acid sites
-
Z. Yang, R. Nielsen, N. Goldman, and A.M. Pedersen Codon-substitution models for heterogeneous selection pressure at amino acid sites Genetics 155 2000 431 449 (Pubitemid 30257141)
-
(2000)
Genetics
, vol.155
, Issue.1
, pp. 431-449
-
-
Yang, Z.1
Nielsen, R.2
Goldman, N.3
Pedersen, A.-M.K.4
-
60
-
-
27844439855
-
Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
-
DOI 10.1093/molbev/msi237
-
J. Zhang, R. Nielsen, and Z. Yang Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level Mol. Biol. Evol. 22 2005 2472 2479 (Pubitemid 41661383)
-
(2005)
Molecular Biology and Evolution
, vol.22
, Issue.12
, pp. 2472-2479
-
-
Zhang, J.1
Nielsen, R.2
Yang, Z.3
|