-
1
-
-
0030801002
-
Gapped-BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul S.F., Madden T.L., Schäffer A.A., Zhang J., Zhang Z., Miller W., Lipman D.J. Gapped-BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997, 25:3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
32244437718
-
Diversity of Peronosporomycete (oomycete) communities associated with the rhizosphere of different plant species
-
Arcate J.M., Karp M.A., Nelson E.B. Diversity of Peronosporomycete (oomycete) communities associated with the rhizosphere of different plant species. Microb. Ecol. 2006, 51:36-50.
-
(2006)
Microb. Ecol.
, vol.51
, pp. 36-50
-
-
Arcate, J.M.1
Karp, M.A.2
Nelson, E.B.3
-
3
-
-
17644397067
-
Profiling and monitoring of microbial populations by denaturing high performance liquid chromatography
-
Barlaan E.A., Sugimori M., Furukawa S., Takeuchi K. Profiling and monitoring of microbial populations by denaturing high performance liquid chromatography. J. Microbiol. Methods 2005, 61:399-412.
-
(2005)
J. Microbiol. Methods
, vol.61
, pp. 399-412
-
-
Barlaan, E.A.1
Sugimori, M.2
Furukawa, S.3
Takeuchi, K.4
-
4
-
-
77954336858
-
ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases
-
Bellemain E., Carlsen T., Brochmann C., Coissac E., Taberlet P., Kauserud H. ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases. BMC Microbiol. 2010, 10:189.
-
(2010)
BMC Microbiol.
, vol.10
, pp. 189
-
-
Bellemain, E.1
Carlsen, T.2
Brochmann, C.3
Coissac, E.4
Taberlet, P.5
Kauserud, H.6
-
5
-
-
38849202384
-
A multi-locus phylogeny for Phytophthora utilizing markers derived from complete genome sequences
-
Blair J.E., Coffey M.D., Park S.-Y., Geiser D.M., Kang S. A multi-locus phylogeny for Phytophthora utilizing markers derived from complete genome sequences. Fungal Genet. Biol. 2008, 45:266-277.
-
(2008)
Fungal Genet. Biol.
, vol.45
, pp. 266-277
-
-
Blair, J.E.1
Coffey, M.D.2
Park, S.-Y.3
Geiser, D.M.4
Kang, S.5
-
6
-
-
0031135337
-
Recombinant DNA sequences generated by PCR amplification
-
Bradley R.D., Hillis D.M. Recombinant DNA sequences generated by PCR amplification. Mol. Biol. Evol. 1997, 14:592-593.
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 592-593
-
-
Bradley, R.D.1
Hillis, D.M.2
-
7
-
-
0033771173
-
PCR primers that amplify fungal rRNA genes from environmental samples
-
Borneman J., Hartin R.J. PCR primers that amplify fungal rRNA genes from environmental samples. Appl. Environ. Microbiol. 2000, 66:4356-4360.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 4356-4360
-
-
Borneman, J.1
Hartin, R.J.2
-
8
-
-
0038075386
-
Multiple new phenotypic taxa from trees and riparian ecosystems in Phytophthora gonapodyides-P. megasperma ITS clade 6, which tend to be high-temperature tolerant and either inbreeding or sterile
-
Brasier C.M., Cooke D.E.L., Duncan J.M., Hansen E.M. Multiple new phenotypic taxa from trees and riparian ecosystems in Phytophthora gonapodyides-P. megasperma ITS clade 6, which tend to be high-temperature tolerant and either inbreeding or sterile. Mycol. Res. 2003, 107:277-290.
-
(2003)
Mycol. Res.
, vol.107
, pp. 277-290
-
-
Brasier, C.M.1
Cooke, D.E.L.2
Duncan, J.M.3
Hansen, E.M.4
-
9
-
-
0038283182
-
Phytophthora inundata sp. nov., a part heterothallic pathogen of trees and shrubs in wet or flooded soils
-
Brasier M., Sánchez-Hernández E., Kirk S. Phytophthora inundata sp. nov., a part heterothallic pathogen of trees and shrubs in wet or flooded soils. Mycol. Res. 2003, 107:477-484.
-
(2003)
Mycol. Res.
, vol.107
, pp. 477-484
-
-
Brasier, M.1
Sánchez-Hernández, E.2
Kirk, S.3
-
10
-
-
24044516287
-
Sudden oak death (Phytophthora ramorum) discovered on trees in Europe
-
Brasier C.M., Denman S., Brown A., Webber J. Sudden oak death (Phytophthora ramorum) discovered on trees in Europe. Mycol. Res. 2004, 108:1107-1110.
-
(2004)
Mycol. Res.
, vol.108
, pp. 1107-1110
-
-
Brasier, C.M.1
Denman, S.2
Brown, A.3
Webber, J.4
-
11
-
-
6344220063
-
Phytophthora alni sp. nov. and its variants: designation of emerging heteroploid hybrid pathogens spreading on Alnus trees
-
Brasier C.M., Kirk S.A., Delcan J., Cooke D.E.L., Jung T., Man in't Veld W.A. Phytophthora alni sp. nov. and its variants: designation of emerging heteroploid hybrid pathogens spreading on Alnus trees. Mycol. Res. 2004, 108:1172-1184.
-
(2004)
Mycol. Res.
, vol.108
, pp. 1172-1184
-
-
Brasier, C.M.1
Kirk, S.A.2
Delcan, J.3
Cooke, D.E.L.4
Jung, T.5
Man in't Veld, W.A.6
-
12
-
-
24044514979
-
Phytophthora kernoviae sp. nov., an invasive pathogen causing bleeding stem lesions on forest trees and foliar necrosis of ornamentals in the UK
-
Brasier C.M., Beales P.A., Kirk S.A., Denman S., Rose J. Phytophthora kernoviae sp. nov., an invasive pathogen causing bleeding stem lesions on forest trees and foliar necrosis of ornamentals in the UK. Mycol. Res. 2005, 109:853-859.
-
(2005)
Mycol. Res.
, vol.109
, pp. 853-859
-
-
Brasier, C.M.1
Beales, P.A.2
Kirk, S.A.3
Denman, S.4
Rose, J.5
-
14
-
-
52149086780
-
The biosecurity threat to the UK and global environment from international trade in plants
-
Brasier C.M. The biosecurity threat to the UK and global environment from international trade in plants. Plant Pathol. 2008, 57:792-808.
-
(2008)
Plant Pathol.
, vol.57
, pp. 792-808
-
-
Brasier, C.M.1
-
15
-
-
77955602257
-
Plant pathology: sudden larch death
-
Brasier C.M., Webber J. Plant pathology: sudden larch death. Nature 2010, 466:824-825.
-
(2010)
Nature
, vol.466
, pp. 824-825
-
-
Brasier, C.M.1
Webber, J.2
-
17
-
-
70349482733
-
454 pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity
-
Buée M., Reich M., Murat C., Morin E., Nilsson R., Uroz S., Martin F. 454 pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity. New Phytol. 2009, 2:449-456.
-
(2009)
New Phytol.
, vol.2
, pp. 449-456
-
-
Buée, M.1
Reich, M.2
Murat, C.3
Morin, E.4
Nilsson, R.5
Uroz, S.6
Martin, F.7
-
18
-
-
84856247565
-
Detection of mRNA by reverse-transcription PCR as an indicator of viability in Phytophthora ramorum
-
Chimento A., Cacciola S.O., Garbelotto M. Detection of mRNA by reverse-transcription PCR as an indicator of viability in Phytophthora ramorum. Forest Pathol 2011, 10.1111/j.1439-0329.2011.00717.x.
-
(2011)
Forest Pathol
-
-
Chimento, A.1
Cacciola, S.O.2
Garbelotto, M.3
-
19
-
-
0033850499
-
A molecular phylogeny of Phytophthora and related oomycetes
-
Cooke D.E.L., Drenth A., Duncan J.M., Wagels G., Brasier C.M. A molecular phylogeny of Phytophthora and related oomycetes. Fungal Genet. Biol. 2000, 30:17-32.
-
(2000)
Fungal Genet. Biol.
, vol.30
, pp. 17-32
-
-
Cooke, D.E.L.1
Drenth, A.2
Duncan, J.M.3
Wagels, G.4
Brasier, C.M.5
-
20
-
-
34247194924
-
Tools to detect, identify and monitor Phytophthora species in natural ecosystems
-
Cooke D.E.L., Schena L., Cacciola S.O. Tools to detect, identify and monitor Phytophthora species in natural ecosystems. J. Plant Pathol. 2007, 89:13-28.
-
(2007)
J. Plant Pathol.
, vol.89
, pp. 13-28
-
-
Cooke, D.E.L.1
Schena, L.2
Cacciola, S.O.3
-
21
-
-
0036270204
-
Detection of Colletotrichum coccodes from soil and potato tubers by conventional and quantitative real-time PCR
-
Cullen D.W., Lees A.K., Toth I.K., Duncan J.M. Detection of Colletotrichum coccodes from soil and potato tubers by conventional and quantitative real-time PCR. Plant Pathol. 2002, 51:281-292.
-
(2002)
Plant Pathol.
, vol.51
, pp. 281-292
-
-
Cullen, D.W.1
Lees, A.K.2
Toth, I.K.3
Duncan, J.M.4
-
22
-
-
17844389621
-
Transmission of Phytophthora ramorum in mixed-evergreen forest in California
-
Davidson J.M., Wickland A.C., Patterson H.A., Falk K.R., Rizzo D.M. Transmission of Phytophthora ramorum in mixed-evergreen forest in California. Phytopathol. 2005, 95:587-596.
-
(2005)
Phytopathol.
, vol.95
, pp. 587-596
-
-
Davidson, J.M.1
Wickland, A.C.2
Patterson, H.A.3
Falk, K.R.4
Rizzo, D.M.5
-
23
-
-
27644495104
-
How many soil samples are needed to show that Phytophthora is absent from sites in the south-west of Western Australia?
-
Davison E.M., Tay F.C.S. How many soil samples are needed to show that Phytophthora is absent from sites in the south-west of Western Australia?. Australas. Plant Path. 2005, 34:293-297.
-
(2005)
Australas. Plant Path.
, vol.34
, pp. 293-297
-
-
Davison, E.M.1
Tay, F.C.S.2
-
24
-
-
79953232393
-
Accessing the soil metagenome for studies of microbial diversity
-
Delmont T.O., Robe P., Cecillon S., Clark I.M., Constancias F., Simonet P., Hirsch P.R., Vogel T.M. Accessing the soil metagenome for studies of microbial diversity. Appl. Environ. Microbiol. 2011, 77:1315-1324.
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 1315-1324
-
-
Delmont, T.O.1
Robe, P.2
Cecillon, S.3
Clark, I.M.4
Constancias, F.5
Simonet, P.6
Hirsch, P.R.7
Vogel, T.M.8
-
25
-
-
0013880101
-
The Saprolegniaceae of the environs of Blelham Tarn: sampling techniques and the estimation of propagules numbers
-
Dick M.W. The Saprolegniaceae of the environs of Blelham Tarn: sampling techniques and the estimation of propagules numbers. J. Gen. Microbiol. 1966, 42:257-282.
-
(1966)
J. Gen. Microbiol.
, vol.42
, pp. 257-282
-
-
Dick, M.W.1
-
26
-
-
79959300621
-
Applications of next generation sequencing in molecular ecology of non-model organisms
-
Ekblom R., Galindo J. Applications of next generation sequencing in molecular ecology of non-model organisms. Heredity 2011, 107:1-15.
-
(2011)
Heredity
, vol.107
, pp. 1-15
-
-
Ekblom, R.1
Galindo, J.2
-
27
-
-
0031239471
-
Persistence of Pseudomonas aureofaciens strains and DNA in soil
-
England L.S., Lee H., Trevors J.T. Persistence of Pseudomonas aureofaciens strains and DNA in soil. Soil Biol. Biochem. 1997, 29:1521-1527.
-
(1997)
Soil Biol. Biochem.
, vol.29
, pp. 1521-1527
-
-
England, L.S.1
Lee, H.2
Trevors, J.T.3
-
30
-
-
0033735445
-
Phylogenetic relationships of Phytophthora species based on ribosomal ITS1 DNA sequence analysis with an emphasis on Waterhouse groups V and VI
-
Förster H., Cummings M.P., Coffey M.D. Phylogenetic relationships of Phytophthora species based on ribosomal ITS1 DNA sequence analysis with an emphasis on Waterhouse groups V and VI. Mycol. Res. 2000, 104:1055-1061.
-
(2000)
Mycol. Res.
, vol.104
, pp. 1055-1061
-
-
Förster, H.1
Cummings, M.P.2
Coffey, M.D.3
-
31
-
-
84857236875
-
Phytophthoras in forests and natural ecosystems
-
U.S.D.A. Forest Service, Pacific Southwest Research Station, Albany, CA, (Tech. Coords)
-
Goheen E.M., Frankel S.J. Phytophthoras in forests and natural ecosystems. Proceedings of the Fourth Meeting of the International Union of Forest Research Organizations (IUFRO) Working Party S07.02.09 2009, U.S.D.A. Forest Service, Pacific Southwest Research Station, Albany, CA, (Tech. Coords).
-
(2009)
Proceedings of the Fourth Meeting of the International Union of Forest Research Organizations (IUFRO) Working Party S07.02.09
-
-
Goheen, E.M.1
Frankel, S.J.2
-
32
-
-
79952367931
-
Phytophthora-ID.org: A sequence-based Phytophthora identification tool
-
Grünwald N.J., Martin F.N., Larsen M.M., Sullivan, Press C.M., Coffey M.D., Hansen E.M., Parke J.L. Phytophthora-ID.org: A sequence-based Phytophthora identification tool. Plant Disease 2011, 95:337-342.
-
(2011)
Plant Disease
, vol.95
, pp. 337-342
-
-
Grünwald, N.J.1
Martin, F.N.2
Larsen, M.M.3
Sullivan Press, C.M.4
Coffey, M.D.5
Hansen, E.M.6
Parke, J.L.7
-
33
-
-
33748045492
-
Development of a one-step real-time PCR assay for diagnosis of Phytophthora ramorum
-
Hughes K.J.D., Tomlinson J.A., Griffin R.L., Boonham N., Inman A.J., Lane C.R. Development of a one-step real-time PCR assay for diagnosis of Phytophthora ramorum. Phytopathol. 2006, 96:975-981.
-
(2006)
Phytopathol.
, vol.96
, pp. 975-981
-
-
Hughes, K.J.D.1
Tomlinson, J.A.2
Griffin, R.L.3
Boonham, N.4
Inman, A.J.5
Lane, C.R.6
-
34
-
-
20444383214
-
Development of a species-specific and sensitive detection assay for Phytophthora infestans and its application for monitoring of inoculum in tubers and soil
-
Hussain S., Lees A.K., Duncan J.M., Cooke D.E.L. Development of a species-specific and sensitive detection assay for Phytophthora infestans and its application for monitoring of inoculum in tubers and soil. Plant Pathol. 2005, 54:373-382.
-
(2005)
Plant Pathol.
, vol.54
, pp. 373-382
-
-
Hussain, S.1
Lees, A.K.2
Duncan, J.M.3
Cooke, D.E.L.4
-
35
-
-
79958294748
-
Discovery of novel intermediate forms redefines the fungal tree of life
-
Jones M.D.M., Forn I., Gadelha C., Egan M.J., Bass D., Massana R., Richards T.A. Discovery of novel intermediate forms redefines the fungal tree of life. Nature 2011, 474:200-203.
-
(2011)
Nature
, vol.474
, pp. 200-203
-
-
Jones, M.D.M.1
Forn, I.2
Gadelha, C.3
Egan, M.J.4
Bass, D.5
Massana, R.6
Richards, T.A.7
-
36
-
-
70349493057
-
Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperate Quercus macrocarpa phyllosphere
-
Jumpponen A., Jones K. Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperate Quercus macrocarpa phyllosphere. New Phytol. 2009, 184:438-448.
-
(2009)
New Phytol.
, vol.184
, pp. 438-448
-
-
Jumpponen, A.1
Jones, K.2
-
37
-
-
0033496440
-
Phytophthora quercina sp. nov., causing root rot of European oaks
-
Jung T., Cooke D.E.L., Blaschke H., Duncan J.M., Oßwald W.F. Phytophthora quercina sp. nov., causing root rot of European oaks. Mycol. Res. 1999, 103:785-798.
-
(1999)
Mycol. Res.
, vol.103
, pp. 785-798
-
-
Jung, T.1
Cooke, D.E.L.2
Blaschke, H.3
Duncan, J.M.4
Oßwald, W.F.5
-
38
-
-
0034507487
-
Involvement of soilborne Phytophthora species in Central European oak decline and the effect of site factors on the disease
-
Jung T., Blaschke H., Oßwald W. Involvement of soilborne Phytophthora species in Central European oak decline and the effect of site factors on the disease. Plant Pathol. 2000, 49:706-718.
-
(2000)
Plant Pathol.
, vol.49
, pp. 706-718
-
-
Jung, T.1
Blaschke, H.2
Oßwald, W.3
-
39
-
-
0036062804
-
Three new species of Phytophthora from European oak forests
-
Jung T., Hansen E.M., Winton L., Oßwald W.F., Delatour C. Three new species of Phytophthora from European oak forests. Mycol. Res. 2002, 106:397-411.
-
(2002)
Mycol. Res.
, vol.106
, pp. 397-411
-
-
Jung, T.1
Hansen, E.M.2
Winton, L.3
Oßwald, W.F.4
Delatour, C.5
-
40
-
-
0041423446
-
Phytophthora pseudosyringae sp. nov., a new species causing root and collar rot of deciduous tree species in Europe
-
Jung T., Nechwatal J., Cooke D.E.L., Hartmann G., Blaschke M., Oßwald W.F., Duncan J.M., Delatour C. Phytophthora pseudosyringae sp. nov., a new species causing root and collar rot of deciduous tree species in Europe. Mycol. Res. 2003, 107:772-789.
-
(2003)
Mycol. Res.
, vol.107
, pp. 772-789
-
-
Jung, T.1
Nechwatal, J.2
Cooke, D.E.L.3
Hartmann, G.4
Blaschke, M.5
Oßwald, W.F.6
Duncan, J.M.7
Delatour, C.8
-
41
-
-
63849300366
-
Beech decline in Central Europe driven by the interaction between Phytophthora infections and climatic extremes
-
Jung T. Beech decline in Central Europe driven by the interaction between Phytophthora infections and climatic extremes. Forest Pathol. 2009, 39:73-94.
-
(2009)
Forest Pathol.
, vol.39
, pp. 73-94
-
-
Jung, T.1
-
42
-
-
79960611994
-
Multiple new Phytophthora species from ITS Clade 6 associated with natural ecosystems in Australia: evolutionary and ecological implications
-
Jung T., Stukely M.J.C., Hardy G.E., St J., White D., Paap T., Dunstan W.A., Burgess T.I. Multiple new Phytophthora species from ITS Clade 6 associated with natural ecosystems in Australia: evolutionary and ecological implications. Persoonia 2011, 26:13-39.
-
(2011)
Persoonia
, vol.26
, pp. 13-39
-
-
Jung, T.1
Stukely, M.J.C.2
Hardy, G.E.3
St, J.4
White, D.5
Paap, T.6
Dunstan, W.A.7
Burgess, T.I.8
-
43
-
-
69149097450
-
Re-evaluation of Phytophthora citricola isolates from multiple woody hosts in Europe and North America reveals a new species, Phytophthora plurivora sp. nov
-
Jung T., Burgess T.I. Re-evaluation of Phytophthora citricola isolates from multiple woody hosts in Europe and North America reveals a new species, Phytophthora plurivora sp. nov. Persoonia 2009, 22:95-110.
-
(2009)
Persoonia
, vol.22
, pp. 95-110
-
-
Jung, T.1
Burgess, T.I.2
-
44
-
-
0038378949
-
A species-specific polymerase chain reaction assay for rapid detection of Phytophthora nicotianae in irrigation water
-
Kong P., Hong C.X., Jeffers S.N., Richardson P.A. A species-specific polymerase chain reaction assay for rapid detection of Phytophthora nicotianae in irrigation water. Phytopathol. 2003, 93:822-831.
-
(2003)
Phytopathol.
, vol.93
, pp. 822-831
-
-
Kong, P.1
Hong, C.X.2
Jeffers, S.N.3
Richardson, P.A.4
-
45
-
-
0002857022
-
Procedures to minimize PCR-product carry-over
-
Academic Press Inc, New York, M.A. Innis, D.H. Gelfand, J.J. Sninsky, T.J. White (Eds.)
-
Kwok S. Procedures to minimize PCR-product carry-over. PCR Protocols: A Guide to Methods and Applications 1990, 142-145. Academic Press Inc, New York. M.A. Innis, D.H. Gelfand, J.J. Sninsky, T.J. White (Eds.).
-
(1990)
PCR Protocols: A Guide to Methods and Applications
, pp. 142-145
-
-
Kwok, S.1
-
46
-
-
0026764455
-
Phylogeny of five fungus-like protoctistan Phytophthora species, inferred from the internal transcribed spacers of ribosomal DNA
-
Lee S.B., Taylor J.W. Phylogeny of five fungus-like protoctistan Phytophthora species, inferred from the internal transcribed spacers of ribosomal DNA. Mol. Biol. Evol. 1992, 9:636-653.
-
(1992)
Mol. Biol. Evol.
, vol.9
, pp. 636-653
-
-
Lee, S.B.1
Taylor, J.W.2
-
47
-
-
84865802480
-
in press. Development of a quantitative real-time PCR assay for Phytophthora infestans and its applicability to leaf, tuber and soil samples.
-
doi: doi:10.1111/j.1365-3059.2011.02574.x
-
Lees, A.K., Sullivan, L., Lynott, J.S., Cullen D.W., in press. Development of a quantitative real-time PCR assay for Phytophthora infestans and its applicability to leaf, tuber and soil samples. Plant Pathol. doi:. doi:10.1111/j.1365-3059.2011.02574.x.
-
Plant Pathol
-
-
Lees, A.K.1
Sullivan, L.2
Lynott, J.S.3
Cullen, D.W.4
-
48
-
-
77953982800
-
Assessment of soil fungal communities using pyrosequencing
-
Lim Y.W., Kim B.K., Kim C., Jung H.S., Kim B.S., Lee J.H., Chun J. Assessment of soil fungal communities using pyrosequencing. J. Microbiol. 2010, 48:284-289.
-
(2010)
J. Microbiol.
, vol.48
, pp. 284-289
-
-
Lim, Y.W.1
Kim, B.K.2
Kim, C.3
Jung, H.S.4
Kim, B.S.5
Lee, J.H.6
Chun, J.7
-
49
-
-
77955482941
-
Negative plant-soil feedback predicts tree-species relative abundance in a tropical forest
-
Mangan S.A., Schnitzer S.A., Herre E.A., Mack K.M.L., Valencia M.C., Sanchez E.I., Bever J.D. Negative plant-soil feedback predicts tree-species relative abundance in a tropical forest. Nature 2010, 466:752-755.
-
(2010)
Nature
, vol.466
, pp. 752-755
-
-
Mangan, S.A.1
Schnitzer, S.A.2
Herre, E.A.3
Mack, K.M.L.4
Valencia, M.C.5
Sanchez, E.I.6
Bever, J.D.7
-
50
-
-
0030901520
-
Population genetics of soilborne fungal plant pathogens
-
Martin F.N., English J.T. Population genetics of soilborne fungal plant pathogens. Phytopathol. 1997, 87:446-447.
-
(1997)
Phytopathol.
, vol.87
, pp. 446-447
-
-
Martin, F.N.1
English, J.T.2
-
51
-
-
2942558424
-
Phylogenetic and ecological analysis of novel marine Stramenopiles
-
Massana R., Castresana J., Balague V., Guillou L., Romari K., Groisillier A., Valentin K., Pedros-Alio C. Phylogenetic and ecological analysis of novel marine Stramenopiles. Appl. Environ. Microbiol. 2004, 70:3528-3534.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 3528-3534
-
-
Massana, R.1
Castresana, J.2
Balague, V.3
Guillou, L.4
Romari, K.5
Groisillier, A.6
Valentin, K.7
Pedros-Alio, C.8
-
52
-
-
0035129246
-
Evaluation of gel filtration resins for the removal of PCR-inhibitory substances from soils and sediments
-
Miller D.N. Evaluation of gel filtration resins for the removal of PCR-inhibitory substances from soils and sediments. J. Microbiol. Meth. 2001, 44:49-58.
-
(2001)
J. Microbiol. Meth.
, vol.44
, pp. 49-58
-
-
Miller, D.N.1
-
53
-
-
58049218990
-
TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops
-
Milne I., Lindner D., Bayer M., Husmeier D., McGuire G., Marshall D.F., Wright F. TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops. Bioinformatics 2008, 25:126-127.
-
(2008)
Bioinformatics
, vol.25
, pp. 126-127
-
-
Milne, I.1
Lindner, D.2
Bayer, M.3
Husmeier, D.4
McGuire, G.5
Marshall, D.F.6
Wright, F.7
-
54
-
-
36049004436
-
Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective
-
Nilsson R., Ryberg M., Kristiansson E., Abarenkov K., Larsson K., Koljalg U. Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective. PLoS One 2006, 1:e59.
-
(2006)
PLoS One
, vol.1
-
-
Nilsson, R.1
Ryberg, M.2
Kristiansson, E.3
Abarenkov, K.4
Larsson, K.5
Koljalg, U.6
-
55
-
-
67149109995
-
The ITS region as a target for characterization of fungal communities using emerging sequencing technologies
-
Nilsson R., Ryberg M., Abarenkov K., Sjökvist E., Kristiansson E. The ITS region as a target for characterization of fungal communities using emerging sequencing technologies. FEMS Microbiol. Lett. 2009, 296:97-101.
-
(2009)
FEMS Microbiol. Lett.
, vol.296
, pp. 97-101
-
-
Nilsson, R.1
Ryberg, M.2
Abarenkov, K.3
Sjökvist, E.4
Kristiansson, E.5
-
56
-
-
65949108590
-
Metagenomic pyrosequencing and microbial identification
-
Petrosino J.F., Highlander S., Luna R.A., Gibbs R.A., Versalovic J. Metagenomic pyrosequencing and microbial identification. Clin. Chem. 2009, 55:856-866.
-
(2009)
Clin. Chem.
, vol.55
, pp. 856-866
-
-
Petrosino, J.F.1
Highlander, S.2
Luna, R.A.3
Gibbs, R.A.4
Versalovic, J.5
-
57
-
-
80255122616
-
Two novel and potentially endemic species of Phytophthora associated with episodic dieback of Kwongan vegetation in the south-west of Western Australia
-
Rea J., Burgess T.I., Hardy G.E., St J., Stukely M.J.C., Jung T. Two novel and potentially endemic species of Phytophthora associated with episodic dieback of Kwongan vegetation in the south-west of Western Australia. Plant Pathol 2011, 10.1111/j.1365-3059.2011.02463.x.
-
(2011)
Plant Pathol
-
-
Rea, J.1
Burgess, T.I.2
Hardy, G.E.3
St, J.4
Stukely, M.J.C.5
Jung, T.6
-
58
-
-
78751483293
-
Phytophthora species in forest streams in Oregon and Alaska
-
Reeser P.W., Sutton W., Hansen E.M., Remigi P., Adams G.C. Phytophthora species in forest streams in Oregon and Alaska. Mycologia 2011, 103:22-35.
-
(2011)
Mycologia
, vol.103
, pp. 22-35
-
-
Reeser, P.W.1
Sutton, W.2
Hansen, E.M.3
Remigi, P.4
Adams, G.C.5
-
59
-
-
24944439050
-
Integrative research and management of an emerging pathogen in California and Oregon forests
-
Rizzo D.M., Garbelotto M., Hansen E.M. Integrative research and management of an emerging pathogen in California and Oregon forests. Annu. Rev. Phytopathol. 2005, 43:309-336.
-
(2005)
Annu. Rev. Phytopathol.
, vol.43
, pp. 309-336
-
-
Rizzo, D.M.1
Garbelotto, M.2
Hansen, E.M.3
-
60
-
-
80054066292
-
DNA barcoding of oomycetes with cytochrome c oxidase subunit I and internal transcribed spacer
-
Robideau G.P., De Cock A.W.A.M., Coffey M.D., Voglmayr H., Brouwer H., Bala K., Chitty D.W., Désaulniers N., Eggertson Q.A., Gachon C.M.M., Hu C.-H., Küpper F.C., Rintoul T.L., Sarhan E., Verstappen E.C.P., Zhang Y., Bonants P.J.M., Ristaino J.B., Lévesque C.A. DNA barcoding of oomycetes with cytochrome c oxidase subunit I and internal transcribed spacer. Mol. Ecol. Resour. 2011, 10.1111/j.1755-0998.2011.03041.x.
-
(2011)
Mol. Ecol. Resour.
-
-
Robideau, G.P.1
De Cock, A.W.A.M.2
Coffey, M.D.3
Voglmayr, H.4
Brouwer, H.5
Bala, K.6
Chitty, D.W.7
Désaulniers, N.8
Eggertson, Q.A.9
Gachon, C.M.M.10
Hu, C.-H.11
Küpper, F.C.12
Rintoul, T.L.13
Sarhan, E.14
Verstappen, E.C.P.15
Zhang, Y.16
Bonants, P.J.M.17
Ristaino, J.B.18
Lévesque, C.A.19
-
61
-
-
0033990048
-
Primer3 on the WWW for general users and for biologist programmers
-
Rozen S., Skaletsky H. Primer3 on the WWW for general users and for biologist programmers. Methods Mol. Biol. 2000, 132:365-386.
-
(2000)
Methods Mol. Biol.
, vol.132
, pp. 365-386
-
-
Rozen, S.1
Skaletsky, H.2
-
63
-
-
4444293563
-
Plankton diversity in the Bay of Fundy as measured by morphological and molecular methods
-
Savin M.C., Martin J.L., LeGresley M., Giewat M., Rooney-Varga J. Plankton diversity in the Bay of Fundy as measured by morphological and molecular methods. Microbial Ecol. 2004, 48:51-65.
-
(2004)
Microbial Ecol.
, vol.48
, pp. 51-65
-
-
Savin, M.C.1
Martin, J.L.2
LeGresley, M.3
Giewat, M.4
Rooney-Varga, J.5
-
64
-
-
0041689684
-
Seasonal dynamics of previously unknown fungal lineages in tundra soils
-
Schadt C.W., Martin A.P., Lipson D.A., Schmidt S.K. Seasonal dynamics of previously unknown fungal lineages in tundra soils. Science 2003, 301:1359-1361.
-
(2003)
Science
, vol.301
, pp. 1359-1361
-
-
Schadt, C.W.1
Martin, A.P.2
Lipson, D.A.3
Schmidt, S.K.4
-
65
-
-
0141890974
-
Rapid and sensitive detection of Rosellinia necatrix in roots and soils by real time Scorpion-PCR
-
Schena L., Ippolito A. Rapid and sensitive detection of Rosellinia necatrix in roots and soils by real time Scorpion-PCR. J. Plant Pathol. 2003, 8:15-25.
-
(2003)
J. Plant Pathol.
, vol.8
, pp. 15-25
-
-
Schena, L.1
Ippolito, A.2
-
66
-
-
33748363887
-
Detection and quantification of P. ramorum, P. kernoviae, P. citricola and P. quercina in symptomatic leaves by multiplex real-time PCR
-
Schena L., Hughes K.J.D., Cooke D.E.L. Detection and quantification of P. ramorum, P. kernoviae, P. citricola and P. quercina in symptomatic leaves by multiplex real-time PCR. Mol. Plant Pathol 2006, 7:365-379.
-
(2006)
Mol. Plant Pathol
, vol.7
, pp. 365-379
-
-
Schena, L.1
Hughes, K.J.D.2
Cooke, D.E.L.3
-
67
-
-
33748058473
-
Assessing the potential of regions of the nuclear and mitochondrial genome to develop a "molecular tool box" for the detection and characterization of Phytophthora species
-
Schena L., Cooke D.E.L. Assessing the potential of regions of the nuclear and mitochondrial genome to develop a "molecular tool box" for the detection and characterization of Phytophthora species. J. Microbiol. Meth. 2006, 67:70-85.
-
(2006)
J. Microbiol. Meth.
, vol.67
, pp. 70-85
-
-
Schena, L.1
Cooke, D.E.L.2
-
68
-
-
38349011349
-
Development and application of a PCR based "molecular tool box" for the detection of Phytophthora species damaging forests and natural ecosystems
-
Schena L., Duncan J.M., Cooke D.E.L. Development and application of a PCR based "molecular tool box" for the detection of Phytophthora species damaging forests and natural ecosystems. Plant Pathol. 2008, 57:64-75.
-
(2008)
Plant Pathol.
, vol.57
, pp. 64-75
-
-
Schena, L.1
Duncan, J.M.2
Cooke, D.E.L.3
-
69
-
-
65349088516
-
Progress towards DNA barcoding of fungi
-
Seifert K.A. Progress towards DNA barcoding of fungi. Mol. Ecol. Resour. 2009, 9:83-89.
-
(2009)
Mol. Ecol. Resour.
, vol.9
, pp. 83-89
-
-
Seifert, K.A.1
-
70
-
-
0031574072
-
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 1997, 24:4876-4882.
-
(1997)
Nucleic Acids Res.
, vol.24
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
71
-
-
0037052493
-
Prokaryotic diversity - magnitude, dynamics, and controlling factors
-
Torsvik V., Ovreas L., Thingstad T.F. Prokaryotic diversity - magnitude, dynamics, and controlling factors. Science 2002, 296:1064-1066.
-
(2002)
Science
, vol.296
, pp. 1064-1066
-
-
Torsvik, V.1
Ovreas, L.2
Thingstad, T.F.3
-
72
-
-
77955092111
-
Phylogeny of the genus Pythium and description of new genera
-
Uzuhashi S., Tojo M., Kakishima M. Phylogeny of the genus Pythium and description of new genera. Mycoscience 2010, 51:337-365.
-
(2010)
Mycoscience
, vol.51
, pp. 337-365
-
-
Uzuhashi, S.1
Tojo, M.2
Kakishima, M.3
-
73
-
-
0037086194
-
Evolution-extensive fungal diversity in plant roots
-
Vandenkoornhuyse P., Baldauf S.L., Leyval C., Straczek J., Young J.P.W. Evolution-extensive fungal diversity in plant roots. Science 2002, 295:2051.
-
(2002)
Science
, vol.295
, pp. 2051
-
-
Vandenkoornhuyse, P.1
Baldauf, S.L.2
Leyval, C.3
Straczek, J.4
Young, J.P.W.5
-
74
-
-
14644406290
-
Occurrence and distribution of Phytophthora species in European chestnut stands and their association with ink disease and crown decline
-
Vettraino A.M., Morel O., Perlerou C., Robin C., Diamandis S., Vannini A. Occurrence and distribution of Phytophthora species in European chestnut stands and their association with ink disease and crown decline. Eur. J. Plant Pathol. 2005, 111:169-180.
-
(2005)
Eur. J. Plant Pathol.
, vol.111
, pp. 169-180
-
-
Vettraino, A.M.1
Morel, O.2
Perlerou, C.3
Robin, C.4
Diamandis, S.5
Vannini, A.6
-
75
-
-
0000432452
-
Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
-
Academic Press Inc, New York, M.A. Innis, D.H. Gelfand, J.J. Sninsky, T.J. White (Eds.)
-
White T.J., Bruns T., Lee S., Taylor J. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR Protocols: A Guide to Methods and Applications 1990, 315-322. Academic Press Inc, New York. M.A. Innis, D.H. Gelfand, J.J. Sninsky, T.J. White (Eds.).
-
(1990)
PCR Protocols: A Guide to Methods and Applications
, pp. 315-322
-
-
White, T.J.1
Bruns, T.2
Lee, S.3
Taylor, J.4
|