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Volumn 67, Issue 1, 2006, Pages 70-85

Assessing the potential of regions of the nuclear and mitochondrial genome to develop a "molecular tool box" for the detection and characterization of Phytophthora species

Author keywords

Forests; Intergenic spacer (IGS) region; Mitochondrial DNA; Natural ecosystems; Phytophthora; Ypt1 gene

Indexed keywords

MITOCHONDRIAL DNA; MOLECULAR MARKER; RAS PROTEIN; RIBOSOME DNA; SPACER DNA;

EID: 33748058473     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mimet.2006.03.003     Document Type: Article
Times cited : (88)

References (52)
  • 1
    • 0033545867 scopus 로고    scopus 로고
    • Origin of a new Phytophthora pathogen through interspecific hybridization
    • Brasier C.M., Cooke D.E.L., and Duncan J.M. Origin of a new Phytophthora pathogen through interspecific hybridization. Proc. Natl. Acad. Sci. U. S. A. 96 (1999) 5878-5883
    • (1999) Proc. Natl. Acad. Sci. U. S. A. , vol.96 , pp. 5878-5883
    • Brasier, C.M.1    Cooke, D.E.L.2    Duncan, J.M.3
  • 2
    • 0038283182 scopus 로고    scopus 로고
    • Phytophthora inundata sp. nov., a part heterothallic of trees and shrubs in wet or flooded soils
    • Brasier C.M., Sanchez-Hernandez E., and Kirk S.A. Phytophthora inundata sp. nov., a part heterothallic of trees and shrubs in wet or flooded soils. Mycol. Res. 107 (2003) 477-484
    • (2003) Mycol. Res. , vol.107 , pp. 477-484
    • Brasier, C.M.1    Sanchez-Hernandez, E.2    Kirk, S.A.3
  • 3
    • 24044516287 scopus 로고    scopus 로고
    • Sudden oak death (Phytophthora ramorum) discovered on trees in Europe
    • Brasier C., Denman S., Brown A., and Webber J. Sudden oak death (Phytophthora ramorum) discovered on trees in Europe. Mycol. Res. 108 (2004) 1107-1110
    • (2004) Mycol. Res. , vol.108 , pp. 1107-1110
    • Brasier, C.1    Denman, S.2    Brown, A.3    Webber, J.4
  • 4
    • 6344220063 scopus 로고    scopus 로고
    • Phytophthora alni sp. nov. and its variants: designation of emerging heteroploid hybrid pathogens spreading on Alnus trees
    • Brasier C.M., Kirk S.A., Delcan J., Cooke D.E.L., Jung T., and Man In't Veld W.A. Phytophthora alni sp. nov. and its variants: designation of emerging heteroploid hybrid pathogens spreading on Alnus trees. Mycol. Res. 108 (2004) 1172-1184
    • (2004) Mycol. Res. , vol.108 , pp. 1172-1184
    • Brasier, C.M.1    Kirk, S.A.2    Delcan, J.3    Cooke, D.E.L.4    Jung, T.5    Man In't Veld, W.A.6
  • 5
    • 24044514979 scopus 로고    scopus 로고
    • Phytophthora kernoviae sp. nov., an invasive pathogen causing bleeding stem lesions on forest trees and foliar necrosis of ornamentals in Britain
    • Brasier C.M., Beales P.A., Kirk S.A., Denman S., and Rose J. Phytophthora kernoviae sp. nov., an invasive pathogen causing bleeding stem lesions on forest trees and foliar necrosis of ornamentals in Britain. Mycol. Res. 109 (2005) 853-859
    • (2005) Mycol. Res. , vol.109 , pp. 853-859
    • Brasier, C.M.1    Beales, P.A.2    Kirk, S.A.3    Denman, S.4    Rose, J.5
  • 7
    • 0030605251 scopus 로고    scopus 로고
    • Characterization of a Phytophthora infestans gene involved in the vesicle transport
    • Chen Y., and Roxby R. Characterization of a Phytophthora infestans gene involved in the vesicle transport. Gene 181 (1996) 89-94
    • (1996) Gene , vol.181 , pp. 89-94
    • Chen, Y.1    Roxby, R.2
  • 10
    • 13944272761 scopus 로고    scopus 로고
    • Genetic diversity of European populations of the oak fine-root pathogen Phytophthora quercina
    • Cooke D.E.L., Jung T., Williams N.A., Schubert R., Oßwald W., and Duncan J.M. Genetic diversity of European populations of the oak fine-root pathogen Phytophthora quercina. For. Pathol. 35 (2005) 57-70
    • (2005) For. Pathol. , vol.35 , pp. 57-70
    • Cooke, D.E.L.1    Jung, T.2    Williams, N.A.3    Schubert, R.4    Oßwald, W.5    Duncan, J.M.6
  • 11
    • 0024297354 scopus 로고
    • Multiple sequence alignment with hierarchical clustering
    • Corpet F. Multiple sequence alignment with hierarchical clustering. Nucleic Acids Res. 16 (1988) 10881-10890
    • (1988) Nucleic Acids Res. , vol.16 , pp. 10881-10890
    • Corpet, F.1
  • 12
    • 0035170908 scopus 로고    scopus 로고
    • Oospore viability and variation in zoospore and hyphal tip derivatives of the hybrid alder phytophthoras
    • Delcan J., and Brasier C.M. Oospore viability and variation in zoospore and hyphal tip derivatives of the hybrid alder phytophthoras. For. Pathol. 31 (2001) 65-83
    • (2001) For. Pathol. , vol.31 , pp. 65-83
    • Delcan, J.1    Brasier, C.M.2
  • 14
    • 0034351387 scopus 로고    scopus 로고
    • Likelihood-based tests of topologies in phylogenetics
    • Goldman N., Anderson J.P., and Rodrigo A.G. Likelihood-based tests of topologies in phylogenetics. Syst. Biol. 49 (2000) 652-670
    • (2000) Syst. Biol. , vol.49 , pp. 652-670
    • Goldman, N.1    Anderson, J.P.2    Rodrigo, A.G.3
  • 15
    • 11144223293 scopus 로고    scopus 로고
    • Susceptibility of Oregon forest trees and shrubs to Phytophthora ramorum: a comparison of artificial inoculation and natural infection
    • Hansen E.M., Parke J.L., and Sutton W. Susceptibility of Oregon forest trees and shrubs to Phytophthora ramorum: a comparison of artificial inoculation and natural infection. Plant Dis. 89 (2005) 63-70
    • (2005) Plant Dis. , vol.89 , pp. 63-70
    • Hansen, E.M.1    Parke, J.L.2    Sutton, W.3
  • 16
    • 0346902037 scopus 로고    scopus 로고
    • Phytophthora nemorosa, a new species causing cankers and leaf blight of forest trees in California and Oregon, U.S.A.
    • Hansen E.M., Reeser P.W., Davidson J.M., Garbelotto M., Ivors K., Douhan L., and Rizzo D.M. Phytophthora nemorosa, a new species causing cankers and leaf blight of forest trees in California and Oregon, U.S.A. Mycotaxon 88 (2003) 129-138
    • (2003) Mycotaxon , vol.88 , pp. 129-138
    • Hansen, E.M.1    Reeser, P.W.2    Davidson, J.M.3    Garbelotto, M.4    Ivors, K.5    Douhan, L.6    Rizzo, D.M.7
  • 17
    • 4644280003 scopus 로고    scopus 로고
    • Detection and quantification of Phytophthora ramorum from California forests using a real-time polymerase chain reaction assay
    • Hayden K.J., Rizzo D., Tse J., and Garbelotto M. Detection and quantification of Phytophthora ramorum from California forests using a real-time polymerase chain reaction assay. Phytopathology 94 (2004) 1075-1083
    • (2004) Phytopathology , vol.94 , pp. 1075-1083
    • Hayden, K.J.1    Rizzo, D.2    Tse, J.3    Garbelotto, M.4
  • 18
    • 8744297171 scopus 로고    scopus 로고
    • Real-time detection of Phytophthora nicotianae and P. citrophthora in citrus roots and soils
    • Ippolito A., Schena L., Soleti Ligorio V., Yaseen T., and Nigro F. Real-time detection of Phytophthora nicotianae and P. citrophthora in citrus roots and soils. Eur. J. Plant Pathol. 110 (2004) 833-843
    • (2004) Eur. J. Plant Pathol. , vol.110 , pp. 833-843
    • Ippolito, A.1    Schena, L.2    Soleti Ligorio, V.3    Yaseen, T.4    Nigro, F.5
  • 19
    • 11144348955 scopus 로고    scopus 로고
    • The spores of Phytophthora: weapons of the plant destroyer
    • Judelson H.S., and Blanco F.A. The spores of Phytophthora: weapons of the plant destroyer. Nat. Rev., Microbiol. 3 (2005) 47-58
    • (2005) Nat. Rev., Microbiol. , vol.3 , pp. 47-58
    • Judelson, H.S.1    Blanco, F.A.2
  • 20
    • 0033496440 scopus 로고    scopus 로고
    • Phytophthora quercina sp. nov., causing root rot of European oaks
    • Jung T., Cooke D.E.L., Blaschke H., Duncan J.M., and Oßwald W. Phytophthora quercina sp. nov., causing root rot of European oaks. Mycol. Res. 103 (1999) 785-798
    • (1999) Mycol. Res. , vol.103 , pp. 785-798
    • Jung, T.1    Cooke, D.E.L.2    Blaschke, H.3    Duncan, J.M.4    Oßwald, W.5
  • 21
    • 0036062804 scopus 로고    scopus 로고
    • Three new species of Phytophthora from European oak forests
    • Jung T., Hansen E.M., Winton L., Oßwald W., and Delatour C. Three new species of Phytophthora from European oak forests. Mycol. Res. 106 (2002) 397-411
    • (2002) Mycol. Res. , vol.106 , pp. 397-411
    • Jung, T.1    Hansen, E.M.2    Winton, L.3    Oßwald, W.4    Delatour, C.5
  • 22
  • 23
    • 0347662316 scopus 로고    scopus 로고
    • Rapid detection of Phytophthora cinnamomi using PCR with primers derived from the Lpv putative storage protein genes
    • Kong P., Hong C.X., and Richardson P.A. Rapid detection of Phytophthora cinnamomi using PCR with primers derived from the Lpv putative storage protein genes. Plant Pathol. 52 (2003) 681-693
    • (2003) Plant Pathol. , vol.52 , pp. 681-693
    • Kong, P.1    Hong, C.X.2    Richardson, P.A.3
  • 24
    • 0038378949 scopus 로고    scopus 로고
    • A species-specific polymerase chain reaction assay for rapid detection of Phytophthora nicotianae in irrigation water
    • Kong P., Hong C.X., Jeffers S.N., and Richardson P.A. A species-specific polymerase chain reaction assay for rapid detection of Phytophthora nicotianae in irrigation water. Phytopathology 93 (2003) 822-831
    • (2003) Phytopathology , vol.93 , pp. 822-831
    • Kong, P.1    Hong, C.X.2    Jeffers, S.N.3    Richardson, P.A.4
  • 27
    • 0031897121 scopus 로고    scopus 로고
    • Specific PCR based detection of Phytophthora medicaginis using the intergenic spacer region of the ribosomal DNA
    • Liew E.C.Y., Maclean D.J., and Irwin J.A.G. Specific PCR based detection of Phytophthora medicaginis using the intergenic spacer region of the ribosomal DNA. Mycol. Res. 102 (1998) 73-80
    • (1998) Mycol. Res. , vol.102 , pp. 73-80
    • Liew, E.C.Y.1    Maclean, D.J.2    Irwin, J.A.G.3
  • 28
    • 0031679420 scopus 로고    scopus 로고
    • Natural hybrids of Phytophthora nicotianae and Phytophthora cactorum demonstrated by isozyme analysis and random amplified polymorphic DNA
    • Man in 't Veld W.A., Veenbaas-Rijks W.J., Ilieva E., de Cock A.W.A.M., Bonants P.J.M., and Pieters R. Natural hybrids of Phytophthora nicotianae and Phytophthora cactorum demonstrated by isozyme analysis and random amplified polymorphic DNA. Phytopathology 88 (1998) 922-929
    • (1998) Phytopathology , vol.88 , pp. 922-929
    • Man in 't Veld, W.A.1    Veenbaas-Rijks, W.J.2    Ilieva, E.3    de Cock, A.W.A.M.4    Bonants, P.J.M.5    Pieters, R.6
  • 29
    • 0037656232 scopus 로고    scopus 로고
    • Phylogenetic relationships among Phytophthora species inferred from sequence analysis of mitochondrially encoded cytochrome oxidase I and II genes
    • Martin F.N., and Tooley P.W. Phylogenetic relationships among Phytophthora species inferred from sequence analysis of mitochondrially encoded cytochrome oxidase I and II genes. Mycologia 95 (2003) 269-284
    • (2003) Mycologia , vol.95 , pp. 269-284
    • Martin, F.N.1    Tooley, P.W.2
  • 30
    • 1342268901 scopus 로고    scopus 로고
    • Phylogenetic relationships of Phytophthora ramorum, P. nemorosa, and P. pseudosyringae, three species recovered from areas in California with sudden oak death
    • Martin F.N., and Tooley P.W. Phylogenetic relationships of Phytophthora ramorum, P. nemorosa, and P. pseudosyringae, three species recovered from areas in California with sudden oak death. Mycol. Res. 107 (2003) 1379-1391
    • (2003) Mycol. Res. , vol.107 , pp. 1379-1391
    • Martin, F.N.1    Tooley, P.W.2
  • 31
    • 2542482828 scopus 로고    scopus 로고
    • Molecular detection of Phytophthora ramorum, the causal agent of sudden oak death in California, and two additional species commonly recovered from diseased plant material
    • Martin F.N., Tooley P.W., and Blomquist C. Molecular detection of Phytophthora ramorum, the causal agent of sudden oak death in California, and two additional species commonly recovered from diseased plant material. Phytopathology 94 (2004) 621-631
    • (2004) Phytopathology , vol.94 , pp. 621-631
    • Martin, F.N.1    Tooley, P.W.2    Blomquist, C.3
  • 32
    • 0028807377 scopus 로고
    • Ras-related proteins in signal transduction and growth control
    • McCormick F. Ras-related proteins in signal transduction and growth control. Mol. Reprod. Dev. 42 (1995) 500-506
    • (1995) Mol. Reprod. Dev. , vol.42 , pp. 500-506
    • McCormick, F.1
  • 33
    • 4444299144 scopus 로고    scopus 로고
    • TOPALi: software for automatic identification of recombinant sequences within DNA multiple alignments
    • Milne I., Wright F., Rowe G., Marshal D.F., Husmeier D., and McGuire G. TOPALi: software for automatic identification of recombinant sequences within DNA multiple alignments. Bioinformatics 20 (2004) 1806-1807
    • (2004) Bioinformatics , vol.20 , pp. 1806-1807
    • Milne, I.1    Wright, F.2    Rowe, G.3    Marshal, D.F.4    Husmeier, D.5    McGuire, G.6
  • 34
    • 0036830416 scopus 로고    scopus 로고
    • Identification and characterization of Pythium species associated with greenhouse floral crops in Pennsylvania
    • Moorman G.W., Kang S., Geiser D.M., and Kim S.H. Identification and characterization of Pythium species associated with greenhouse floral crops in Pennsylvania. Plant Dis. 86 (2002) 1227-1231
    • (2002) Plant Dis. , vol.86 , pp. 1227-1231
    • Moorman, G.W.1    Kang, S.2    Geiser, D.M.3    Kim, S.H.4
  • 35
    • 0035169706 scopus 로고    scopus 로고
    • A combination of baiting and PCR techniques for the detection of Phytophthora quercina and P. citricola in soil samples from oak stands
    • Nechwatal J., Schlenzing A., Jung T., Cooke D.E.L., Duncan J.M., and Oßwald W.F. A combination of baiting and PCR techniques for the detection of Phytophthora quercina and P. citricola in soil samples from oak stands. For. Pathol. 31 (2001) 85-97
    • (2001) For. Pathol. , vol.31 , pp. 85-97
    • Nechwatal, J.1    Schlenzing, A.2    Jung, T.3    Cooke, D.E.L.4    Duncan, J.M.5    Oßwald, W.F.6
  • 36
    • 0030993742 scopus 로고    scopus 로고
    • The fungal mitochondrial genome project: evolution of fungal mitochondrial genomes and their gene expression
    • Paquin B., Laforest M.J., Forget L., Roewer I., Wang Z., Longcore J., and Lang B.F. The fungal mitochondrial genome project: evolution of fungal mitochondrial genomes and their gene expression. Curr. Genet. 31 (1997) 380-395
    • (1997) Curr. Genet. , vol.31 , pp. 380-395
    • Paquin, B.1    Laforest, M.J.2    Forget, L.3    Roewer, I.4    Wang, Z.5    Longcore, J.6    Lang, B.F.7
  • 37
    • 2542461375 scopus 로고    scopus 로고
    • Sudden oak death: endangering California and Oregon forest ecosystems
    • Rizzo D.M., and Garbelotto M. Sudden oak death: endangering California and Oregon forest ecosystems. Front. Ecol. Environ. 1 (2003) 197-204
    • (2003) Front. Ecol. Environ. , vol.1 , pp. 197-204
    • Rizzo, D.M.1    Garbelotto, M.2
  • 38
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Krawetz S., and Misener S. (Eds), Humana Press, Totowa, NJ
    • Rozen S., and Skaletsky H.J. Primer3 on the WWW for general users and for biologist programmers. In: Krawetz S., and Misener S. (Eds). Bioinformatics Methods and Protocols: Methods in Molecular Biology (2000), Humana Press, Totowa, NJ 365-386
    • (2000) Bioinformatics Methods and Protocols: Methods in Molecular Biology , pp. 365-386
    • Rozen, S.1    Skaletsky, H.J.2
  • 39
    • 0027320902 scopus 로고
    • Oomycete mtDNA: Phytophthora genes for cytochrome c oxidase use an unmodified genetic code and encode proteins most similar to plants
    • Sachay D.J., Hudspeth D.S.S., Nadler S.A., and Hudspeth M.E.S. Oomycete mtDNA: Phytophthora genes for cytochrome c oxidase use an unmodified genetic code and encode proteins most similar to plants. Exp. Mycol. 17 (1993) 7-23
    • (1993) Exp. Mycol. , vol.17 , pp. 7-23
    • Sachay, D.J.1    Hudspeth, D.S.S.2    Nadler, S.A.3    Hudspeth, M.E.S.4
  • 40
    • 0141890974 scopus 로고    scopus 로고
    • Rapid and sensitive detection of Rosellinia necatrix in roots and soils by real time Scorpion-PCR
    • Schena L., and Ippolito A. Rapid and sensitive detection of Rosellinia necatrix in roots and soils by real time Scorpion-PCR. J. Plant Pathol. 85 (2003) 15-25
    • (2003) J. Plant Pathol. , vol.85 , pp. 15-25
    • Schena, L.1    Ippolito, A.2
  • 41
    • 8744263850 scopus 로고    scopus 로고
    • Real-time quantitative PCR: a new technology to detect and study phytopathogenic and antagonistic fungi
    • Schena L., Nigro F., Ippolito A., and Gallitelli D. Real-time quantitative PCR: a new technology to detect and study phytopathogenic and antagonistic fungi. Eur. J. Plant Pathol. 110 (2004) 893-908
    • (2004) Eur. J. Plant Pathol. , vol.110 , pp. 893-908
    • Schena, L.1    Nigro, F.2    Ippolito, A.3    Gallitelli, D.4
  • 43
    • 0023369514 scopus 로고
    • The ras-like yeast Ypt1 gene is itself essential for growth, sporulation, and starvation response
    • Segev N., and Botstein D. The ras-like yeast Ypt1 gene is itself essential for growth, sporulation, and starvation response. Mol. Cell. Biol. 7 (1987) 2367-2377
    • (1987) Mol. Cell. Biol. , vol.7 , pp. 2367-2377
    • Segev, N.1    Botstein, D.2
  • 44
    • 4444228560 scopus 로고    scopus 로고
    • Quantification of the susceptibility of the native flora of the south-west Botanical Province, western Australia, to Phytophthora cinnamomi
    • Shearer B.L., Crane C.E., and Cochrane A. Quantification of the susceptibility of the native flora of the south-west Botanical Province, western Australia, to Phytophthora cinnamomi. Aust. J. Bot. 52 (2004) 435-443
    • (2004) Aust. J. Bot. , vol.52 , pp. 435-443
    • Shearer, B.L.1    Crane, C.E.2    Cochrane, A.3
  • 45
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24 (1997) 4876-4882
    • (1997) Nucleic Acids Res. , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 46
  • 48
    • 14644406290 scopus 로고    scopus 로고
    • Occurrence and distribution of Phytophthora species in European chestnut stands, and their association with Ink Disease and crown decline
    • Vettraino A.M., Morel O., Perlerou C., Robin C., Diamandis S., and Vannini A. Occurrence and distribution of Phytophthora species in European chestnut stands, and their association with Ink Disease and crown decline. Eur. J. Plant Pathol. 111 (2005) 169-180
    • (2005) Eur. J. Plant Pathol. , vol.111 , pp. 169-180
    • Vettraino, A.M.1    Morel, O.2    Perlerou, C.3    Robin, C.4    Diamandis, S.5    Vannini, A.6
  • 49
    • 0037344551 scopus 로고    scopus 로고
    • Sequence variation of intergenic mitochondrial DNA spacers (mtDNA-IGS) of Phytophthora infestans (Oomycetes) and related species
    • Wattier R.A.M., Gathercole L.L., Assinder S.J., Gliddon C.J., Deahl K.L., Shaw D.S., and Mills D.I. Sequence variation of intergenic mitochondrial DNA spacers (mtDNA-IGS) of Phytophthora infestans (Oomycetes) and related species. Mol. Ecol. Notes 3 (2003) 136-138
    • (2003) Mol. Ecol. Notes , vol.3 , pp. 136-138
    • Wattier, R.A.M.1    Gathercole, L.L.2    Assinder, S.J.3    Gliddon, C.J.4    Deahl, K.L.5    Shaw, D.S.6    Mills, D.I.7
  • 51
    • 0000432452 scopus 로고
    • Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
    • Innis M.A., Gelfand D.H., Sninsky J.J., and White T.J. (Eds), Academic Press, Inc., New York, USA
    • White T.J., Bruns T., Lee S., and Taylor J. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis M.A., Gelfand D.H., Sninsky J.J., and White T.J. (Eds). PCR Protocols: a Guide to Methods and Applications (1990), Academic Press, Inc., New York, USA 315-322
    • (1990) PCR Protocols: a Guide to Methods and Applications , pp. 315-322
    • White, T.J.1    Bruns, T.2    Lee, S.3    Taylor, J.4
  • 52
    • 0035737104 scopus 로고    scopus 로고
    • Molecular diagnosis of Phytophthora lateralis in trees, water, and foliage baits using multiplex polymerase chain reaction
    • Winton L.M., and Hansen E.M. Molecular diagnosis of Phytophthora lateralis in trees, water, and foliage baits using multiplex polymerase chain reaction. For. Pathol. 31 (2001) 275-283
    • (2001) For. Pathol. , vol.31 , pp. 275-283
    • Winton, L.M.1    Hansen, E.M.2


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