Mutation of zebrafish Snapc4 is associated with loss of the intrahepatic biliary network

Developmental Biology

Volumn 363, Issue 1, 2012, Pages 128-137

  Schaub, Madeline ^a   Nussbaum, Justin ^a   Verkade, Heather ^b,c   Ober, Elke A ^b,d   Stainier, Didier Y R ^b   Sakaguchi, Takuya F ^a,b  

^a LERNER RESEARCH INSTITUTE   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c MONASH UNIVERSITY   (Australia)

^d NATIONAL INSTITUTE FOR MEDICAL RESEARCH   (United Kingdom)

Author keywords

Biliary epithelial cells; Liver; SNAP190; SNAPC2; SnRNA; Vanishing bile duct

Indexed keywords

SMALL NUCLEAR RNA; SMALL NUCLEAR RNA ACTIVATING COMPLEX POLYPEPTIDE 2; SMALL NUCLEAR RNA ACTIVATING COMPLEX POLYPEPTIDE 4; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG;

ANIMAL CELL; ANIMAL TISSUE; APOPTOSIS; ARTICLE; CARBOXY TERMINAL SEQUENCE; CELL DEGENERATION; CELL DIFFERENTIATION; CELL SURVIVAL; CONTROLLED STUDY; EPITHELIUM CELL; GALLBLADDER; GENE; GENE EXPRESSION; GENE MUTATION; GENETIC ASSOCIATION; HEPATOBILIARY DISEASE; LARVA; LIPID TRANSPORT; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN INTERACTION; RNA TRANSCRIPTION; SNAPC2 GENE; SNAPC4 GENE; TRANSCRIPTION REGULATION; ZEBRA FISH;

DANIO RERIO; VERTEBRATA;

EID: 84857032082     PISSN: 00121606     EISSN: 1095564X     Source Type: Journal    
DOI: 10.1016/j.ydbio.2011.12.025     Document Type: Article

References (39)

1. Alvaro D. Biliary epithelium: a new chapter in cell biology. Ital. J. Gastroenterol. Hepatol. 1999, 31:78-83.
2. Das A., Bellofatto V. RNA polymerase II-dependent transcription in trypanosomes is associated with a SNAP complex-like transcription factor. Proc. Natl. Acad. Sci. U. S. A. 2003, 100:80-85.
3. Farber S.A., Pack M., Ho S.Y., Johnson I.D., Wagner D.S., Dosch R., Mullins M.C., Hendrickson H.S., Hendrickson E.K., Halpern M.E. Genetic analysis of digestive physiology using fluorescent phospholipid reporters. Science 2001, 292:1385-1388.
4. Field H.A., Ober E.A., Roeser T., Stainier D.Y.R. Formation of the digestive system in zebrafish. I. Liver Morphogenesis. Developmental Biology 2003, 253:279-290.
5. Harada N., Visser R., Dawson A., Fukamachi M., Iwakoshi M., Okamoto N., Kishino T., Niikawa N., Matsumoto N. A 1-Mb critical region in six patients with 9q34.3 terminal deletion syndrome. J. Hum. Genet. 2004, 49:440-444.
6. Henry R.W., Ma B., Sadowski C.L., Kobayashi R., Hernandez N. Cloning and characterization of SNAP50, a subunit of the snRNA-activating protein complex SNAPc. EMBO J. 1996, 15:7129-7136.
7. Henry R.W., Mittal V., Ma B., Kobayashi R., Hernandez N. SNAP19 mediates the assembly of a functional core promoter complex (SNAPc) shared by RNA polymerases II and III. Genes Dev. 1998, 12:2664-2672.
8. Hernandez G., Valafar F., Stumph W.E. Insect small nuclear RNA gene promoters evolve rapidly yet retain conserved features involved in determining promoter activity and RNA polymerase specificity. Nucleic Acids Res. 2007, 35:21-34.
9. Iwakoshi M., Okamoto N., Harada N., Nakamura T., Yamamori S., Fujita H., Niikawa N., Matsumoto N. 9q34.3 deletion syndrome in three unrelated children. Am. J. Med. Genet. A 2004, 126A:278-283.
10. Jawdekar G.W., Henry R.W. Transcriptional regulation of human small nuclear RNA genes. Biochim. Biophys. Acta 2008, 1779:295-305.
11. Jin S.W., Beis D., Mitchell T., Chen J.N., Stainier D.Y. Cellular and molecular analyses of vascular tube and lumen formation in zebrafish. Development 2005, 132:5199-5209.
12. Kim M.K., Kang Y.S., Lai H.T., Barakat N.H., Magante D., Stumph W.E. Identification of SNAPc subunit domains that interact with specific nucleotide positions in the U1 and U6 gene promoters. Mol. Cell. Biol. 2010, 30:2411-2423.
13. Konig H., Matter N., Bader R., Thiele W., Muller F. Splicing segregation: the minor spliceosome acts outside the nucleus and controls cell proliferation. Cell 2007, 131:718-729.
14. Korzh S., Pan X., Garcia-Lecea M., Winata C.L., Wohland T., Korzh V., Gong Z. Requirement of vasculogenesis and blood circulation in late stages of liver growth in zebrafish. BMC Dev. Biol. 2008, 8:84.
15. Lazaridis K.N., Strazzabosco M., Larusso N.F. The cholangiopathies: disorders of biliary epithelia. Gastroenterology 2004, 127:1565-1577.
16. Lemaigre F., Zaret K.S. Liver development update: new embryo models, cell lineage control, and morphogenesis. Curr. Opin. Genet. Dev. 2004, 14:582-590.
17. Li C., Harding G.A., Parise J., McNamara-Schroeder K.J., Stumph W.E. Architectural arrangement of cloned proximal sequence element-binding protein subunits on Drosophila U1 and U6 snRNA gene promoters. Mol. Cell. Biol. 2004, 24:1897-1906.
18. Lorent K., Yeo S.Y., Oda T., Chandrasekharappa S., Chitnis A., Matthews R.R., Pack M. Inhibition of Jagged-mediated Notch signaling disrupts zebrafish biliary development and generates multi-organ defects compatible with an Alagille syndrome phenocopy. Development 2004, 131:5753-5766.
19. Lorent K., Moore J.C., Siekmann A.F., Lawson N., Pack M. Reiterative use of the notch signal during zebrafish intrahepatic biliary development. Dev. Dyn. 2010, 239:855-864.
20. Ma B., Hernandez N. A map of protein-protein contacts within the small nuclear RNA-activating protein complex SNAPc. J. Biol. Chem. 2001, 276:5027-5035.
21. Matthews R.P., Lorent K., Russo P., Pack M. The zebrafish onecut gene hnf-6 functions in an evolutionarily conserved genetic pathway that regulates vertebrate biliary development. Dev. Biol. 2004, 274:245-259.
22. Mittal V., Ma B., Hernandez N. SNAP(c): a core promoter factor with a built-in DNA-binding damper that is deactivated by the Oct-1 POU domain. Genes Dev. 1999, 13:1807-1821.
23. Neas K.R., Smith J.M., Chia N., Huseyin S., St Heaps L., Peters G., Sholler G., Tzioumi D., Sillence D.O., Mowat D. Three patients with terminal deletions within the subtelomeric region of chromosome 9q. Am. J. Med. Genet. A 2005, 132:425-430.
24. Neff M.M., Neff J.D., Chory J., Pepper A.E. dCAPS, a simple technique for the genetic analysis of single nucleotide polymorphisms: experimental applications in Arabidopsis thaliana genetics. Plant J. 1998, 14:387-392.
25. Ober E.A., Verkade H., Field H.A., Stainier D.Y. Mesodermal Wnt2b signalling positively regulates liver specification. Nature 2006, 442:688-691.
26. Parsons M.J., Pisharath H., Yusuff S., Moore J.C., Siekmann A.F., Lawson N., Leach S.D. Notch-responsive cells initiate the secondary transition in larval zebrafish pancreas. Mech. Dev. 2009, 126:898-912.
27. Pass A.K., McLin V.A., Rushton J.R., Kearney D.L., Hastings C.A., Margolin J.F. Vanishing bile duct syndrome and Hodgkin disease: a case series and review of the literature. J. Pediatr. Hematol. Oncol. 2008, 30:976-980.
28. Pointon J.J., Harvey D., Karaderi T., Appleton L.H., Farrar C., Stone M.A., Sturrock R.D., Brown M.A., Wordsworth B.P. Elucidating the chromosome 9 association with AS; CARD9 is a candidate gene. Genes Immun. 2010, 11:490-496.
29. Raynaud P., Tate J., Callens C., Cordi S., Vandersmissen P., Carpentier R., Sempoux C., Devuyst O., Pierreux C.E., Courtoy P., et al. A classification of ductal plate malformations based on distinct pathogenic mechanisms of biliary dysmorphogenesis. Hepatology 2011, 53:1959-1966.
30. Sadowski C.L., Henry R.W., Kobayashi R., Hernandez N. The SNAP45 subunit of the small nuclear RNA (snRNA) activating protein complex is required for RNA polymerase II and III snRNA gene transcription and interacts with the TATA box binding protein. Proc. Natl. Acad. Sci. U. S. A. 1996, 93:4289-4293.
31. Sakaguchi T., Kikuchi Y., Kuroiwa A., Takeda H., Stainier D.Y. The yolk syncytial layer regulates myocardial migration by influencing extracellular matrix assembly in zebrafish. Development 2006, 133:4063-4072.
32. Sakaguchi T.F., Sadler K.C., Crosnier C., Stainier D.Y. Endothelial signals modulate hepatocyte apicobasal polarization in zebrafish. Curr. Biol. 2008, 18:1565-1571.
33. Schimanski B., Nguyen T.N., Gunzl A. Characterization of a multisubunit transcription factor complex essential for spliced-leader RNA gene transcription in Trypanosoma brucei. Mol. Cell. Biol. 2005, 25:7303-7313.
34. Shanmugam M., Hernandez N. Mitotic functions for SNAP45, a subunit of the small nuclear RNA-activating protein complex SNAPc. J. Biol. Chem. 2008, 283:14845-14856.
35. Strazzabosco M., Spirli C., Okolicsanyi L. Pathophysiology of the intrahepatic biliary epithelium. J. Gastroenterol. Hepatol. 2000, 15:244-253.
36. Strazzabosco M., Fabris L., Spirli C. Pathophysiology of cholangiopathies. J. Clin. Gastroenterol. 2005, 39:S90-S102.
37. Wong M.W., Henry R.W., Ma B., Kobayashi R., Klages N., Matthias P., Strubin M., Hernandez N. The large subunit of basal transcription factor SNAPc is a Myb domain protein that interacts with Oct-1. Mol. Cell. Biol. 1998, 18:368-377.
38. Yoon J.B., Murphy S., Bai L., Wang Z., Roeder R.G. Proximal sequence element-binding transcription factor (PTF) is a multisubunit complex required for transcription of both RNA polymerase II- and RNA polymerase III-dependent small nuclear RNA genes. Mol. Cell. Biol. 1995, 15:2019-2027.
39. Yoon J.B., Roeder R.G. Cloning of two proximal sequence element-binding transcription factor subunits (gamma and delta) that are required for transcription of small nuclear RNA genes by RNA polymerases II and III and interact with the TATA-binding protein. Mol. Cell. Biol. 1996, 16:1-9.