메뉴 건너뛰기




Volumn 2011, Issue , 2011, Pages

PpiTrim: Constructing non-redundant and up-to-date interactomes

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

EID: 84856398620     PISSN: 17580463     EISSN: None     Source Type: Journal    
DOI: 10.1093/database/bar036     Document Type: Article
Times cited : (9)

References (37)
  • 1
    • 77955505357 scopus 로고    scopus 로고
    • Protein-protein interactions essentials: Key concepts to building and analyzing interactome networks
    • De Las Rivas, J. and Fontanillo, C. (2010) Protein-protein interactions essentials: key concepts to building and analyzing interactome networks. PLoS Comput. Biol., 60, e1000807.
    • (2010) PLoS Comput. Biol. , vol.60
    • De Las Rivas, J.1    Fontanillo, C.2
  • 3
    • 75549087047 scopus 로고    scopus 로고
    • The intact molecular interaction database in 2010
    • Database issue
    • Aranda, B., Achuthan, P., Alam-Faruque, Y. et al. (2010) The IntAct molecular interaction database in 2010. Nucleic Acids. Res., 38(Database issue), D525-D531.
    • (2010) Nucleic Acids. Res. , vol.38
    • Aranda, B.1    Achuthan, P.2    Alam-Faruque, Y.3
  • 4
    • 75549083295 scopus 로고    scopus 로고
    • Mint, the molecular interaction database: 2009 update
    • Database issue
    • Ceol, A., Chatr-Aryamontri, A., Licata, L. et al. (2010) MINT, the molecular interaction database: 2009 update. Nucleic Acids. Res., 38(Database issue), D532-D539.
    • (2010) Nucleic Acids. Res. , vol.38
    • Ceol, A.1    Chatr-Aryamontri, A.2    Licata, L.3
  • 8
    • 58149193222 scopus 로고    scopus 로고
    • Human protein reference database-2009 update
    • Database issue
    • Keshava Prasad, T. S., Goel, R., Kandasamy, K. et al. (2009) Human Protein Reference Database-2009 update. Nucleic Acids. Res., 37(Database issue), D767-D772.
    • (2009) Nucleic Acids. Res. , vol.37
    • Keshava Prasad, T.S.1    Goel, R.2    Kandasamy, K.3
  • 9
    • 58149213932 scopus 로고    scopus 로고
    • Literature-curated protein interaction data sets
    • Cusick, M. E., Yu, H., Smolyar, A. et al. (2009) Literature-curated protein interaction data sets. Nat. Methods, 6, 39-46.
    • (2009) Nat. Methods , vol.6 , pp. 39-46
    • Cusick, M.E.1    Yu, H.2    Smolyar, A.3
  • 11
    • 35348976204 scopus 로고    scopus 로고
    • Broadening the horizon-level 2.5 of the hupo-psi format for molecular interactions
    • Kerrien, S., Orchard, S., Montecchi-Palazzi, L. et al. (2007) Broadening the horizon-level 2.5 of the HUPO-PSI format for molecular interactions. BMC Biol., 5, 44.
    • (2007) BMC Biol. , vol.5 , pp. 44
    • Kerrien, S.1    Orchard, S.2    Montecchi-Palazzi, L.3
  • 12
    • 38449088751 scopus 로고    scopus 로고
    • Inferring cellular networks-A review
    • Markowetz, F. and Spang, R. (2007) Inferring cellular networks-A review. BMC Bioinformatics, 8 (Suppl. 6), S5.
    • (2007) BMC Bioinformatics , vol.8 , Issue.SUPPL. 6
    • Markowetz, F.1    Spang, R.2
  • 13
    • 57549085034 scopus 로고    scopus 로고
    • Prediction of protein-protein interaction networks
    • Gomez, S. M., Choi, K. and Wu, Y. (2008) Prediction of protein-protein interaction networks. Current Protocols in Bioinformatics, 22, 8.2.1-8.2.14.
    • (2008) Current Protocols in Bioinformatics , vol.22 , pp. 821-8214
    • Gomez, S.M.1    Choi, K.2    Wu, Y.3
  • 14
    • 67149143183 scopus 로고    scopus 로고
    • Inferring protein-protein interactions from multiple protein domain combinations
    • Kanaan, S. P., Huang, C., Wuchty, S. et al. (2009) Inferring protein-protein interactions from multiple protein domain combinations. Methods Mol. Biol., 541, 43-59.
    • (2009) Methods Mol. Biol. , vol.541 , pp. 43-59
    • Kanaan, S.P.1    Huang, C.2    Wuchty, S.3
  • 15
    • 72949117638 scopus 로고    scopus 로고
    • Predicting protein-protein interactions in the context of protein evolution
    • Lewis, A. C. F., Saeed, R. and Deane, C. M. (2010) Predicting protein-protein interactions in the context of protein evolution. Mol. Biosyst., 6, 55-64.
    • (2010) Mol. Biosyst. , vol.6 , pp. 55-64
    • Lewis, A.C.F.1    Saeed, R.2    Deane, C.M.3
  • 16
    • 67349200229 scopus 로고    scopus 로고
    • Interaction networks: From protein functions to drug discovery. A review
    • Chautard, E., Thierry-Mieg, N. and Ricard-Blum, S. (2009) Interaction networks: from protein functions to drug discovery. A review. Pathol. Biol., 57, 324-333.
    • (2009) Pathol. Biol. , vol.57 , pp. 324-333
    • Chautard, E.1    Thierry-Mieg, N.2    Ricard-Blum, S.3
  • 17
    • 77950353931 scopus 로고    scopus 로고
    • Toward the dynamic interactome: It's about time
    • Przytycka, T. M., Singh, M. and Slonim, D. K. (2010) Toward the dynamic interactome: it's about time. Brief. Bioinform., 11, 15-29.
    • (2010) Brief. Bioinform. , vol.11 , pp. 15-29
    • Przytycka, T.M.1    Singh, M.2    Slonim, D.K.3
  • 18
    • 75549091794 scopus 로고    scopus 로고
    • Corum: The comprehensive resource of mammalian protein complexes-2009
    • Database issue
    • Ruepp, A., Waegele, B., Lechner, M. et al. (2010) CORUM: the comprehensive resource of mammalian protein complexes-2009. Nucleic Acids Res., 38(Database issue), D497-D501.
    • (2010) Nucleic Acids Res. , vol.38
    • Ruepp, A.1    Waegele, B.2    Lechner, M.3
  • 19
    • 33644878150 scopus 로고    scopus 로고
    • Mpact: The mips protein interaction resource on yeast
    • Database issue
    • Gldener, U., Mnsterktter, M., Oesterheld, M. et al. (2006) MPact: the MIPS protein interaction resource on yeast. Nucleic Acids Res., 34(Database issue), D436-D441.
    • (2006) Nucleic Acids Res. , vol.34
    • Gldener, U.1    Mnsterktter, M.2    Oesterheld, M.3
  • 21
    • 18744376914 scopus 로고    scopus 로고
    • Online predicted human interaction database
    • DOI 10.1093/bioinformatics/bti273
    • Brown, K. R. and Jurisica, I. (2005) Online predicted human interaction database. Bioinformatics, 21, 2076-2082. (Pubitemid 40668047)
    • (2005) Bioinformatics , vol.21 , Issue.9 , pp. 2076-2082
    • Brown, K.R.1    Jurisica, I.2
  • 22
    • 54949127160 scopus 로고    scopus 로고
    • Irefindex: A consolidated protein interaction database with provenance
    • Razick, S., Magklaras, G. and Donaldson, I. M. (2008) iRefIndex: a consolidated protein interaction database with provenance. BMC Bioinformatics, 9, 405.
    • (2008) BMC Bioinformatics , vol.9 , pp. 405
    • Razick, S.1    Magklaras, G.2    Donaldson, I.M.3
  • 23
    • 79952052352 scopus 로고    scopus 로고
    • Irefweb: Interactive analysis of consolidated protein interaction data and their supporting evidence
    • doi:10.1093/database/baq023
    • Turner, B., Razick, S., Turinsky, A. L. et al. (2010) iRefWeb: interactive analysis of consolidated protein interaction data and their supporting evidence. Database, doi:10.1093/database/baq023.
    • (2010) Database
    • Turner, B.1    Razick, S.2    Turinsky, A.L.3
  • 24
    • 79952676403 scopus 로고    scopus 로고
    • Literature curation of protein interactions: Measuring agreement across major public databases
    • doi:10.1093/database/baq026
    • Turinsky, A. L., Razick, S., Turner, B. et al. (2010) Literature curation of protein interactions: measuring agreement across major public databases. Database, doi:10.1093/database/baq026.
    • (2010) Database
    • Turinsky, A.L.1    Razick, S.2    Turner, B.3
  • 25
    • 69849111694 scopus 로고    scopus 로고
    • Itm probe: Analyzing information flow in protein networks
    • Stojmirović, A. and Yu, Y.-K. (2009) ITM Probe: analyzing information flow in protein networks. Bioinformatics, 25, 2447-2449.
    • (2009) Bioinformatics , vol.25 , pp. 2447-2449
    • Stojmirović, A.1    Yu, Y.-K.2
  • 26
    • 78651317908 scopus 로고    scopus 로고
    • Entrez gene: Gene-centered information at ncbi
    • Database issue
    • Maglott, D., Ostell, J., Pruitt, K. D. et al. (2011) Entrez Gene: gene-centered information at NCB I. Nucleic Acids Res, 39(Database issue), D52-D577.
    • (2011) Nucleic Acids Res , vol.39
    • Maglott, D.1    Ostell, J.2    Pruitt, K.D.3
  • 27
    • 75849153303 scopus 로고    scopus 로고
    • The universal protein resource (uniprot) in 2010
    • Database issue
    • UniProt Consortium (2010) The Universal Protein Resource (UniProt) in 2010. Nucleic Acids Res., 38(Database issue), D142-D148.
    • (2010) Nucleic Acids Res. , vol.38
    • UniProt Consortium1
  • 31
    • 33644555054 scopus 로고    scopus 로고
    • Proteome survey reveals modularity of the yeast cell machinery
    • Gavin, A.-C., Aloy, P., Grandi, P. et al. (2006) Proteome survey reveals modularity of the yeast cell machinery. Nature, 440, 631-636.
    • (2006) Nature , vol.440 , pp. 631-636
    • Gavin, A.-C.1    Aloy, P.2    Grandi, P.3
  • 32
    • 33645453254 scopus 로고    scopus 로고
    • Global landscape of protein complexes in the yeast saccharomyces cerevisiae
    • Krogan, N. J., Cagney, G., Yu, H. et al. (2006) Global landscape of protein complexes in the yeast saccharomyces cerevisiae. Nature, 440, 637-643.
    • (2006) Nature , vol.440 , pp. 637-643
    • Krogan, N.J.1    Cagney, G.2    Yu, H.3
  • 34
    • 57949094762 scopus 로고    scopus 로고
    • Raid-dbs: Massspectrometry based peptide identification web server with knowledge integration
    • Alves, G., Ogurtsov, A. Y. and Yu, Y.-K. (2008) RAId-DbS: massspectrometry based peptide identification web server with knowledge integration. BMC Genomics, 9, 505.
    • (2008) BMC Genomics , vol.9 , pp. 505
    • Alves, G.1    Ogurtsov, A.Y.2    Yu, Y.-K.3
  • 36
    • 78651275182 scopus 로고    scopus 로고
    • Reactome: A database of reactions, pathways and biological processes
    • Database issue
    • Croft, D., O'Kelly, G., Wu, G. et al. (2011) Reactome: a database of reactions, pathways and biological processes. Nucleic Acids Res., 39(Database issue), D691-D697.
    • (2011) Nucleic Acids Res. , vol.39
    • Croft, D.1    O'Kelly, G.2    Wu, G.3
  • 37
    • 0032476584 scopus 로고    scopus 로고
    • Multiple transcriptional activation complexes tether the yeast activator Met4 to DNA
    • DOI 10.1093/emboj/17.21.6327
    • Blaiseau, P. L. and Thomas, D. (1998) Multiple transcriptional activation complexes tether the yeast activator Met4 to DN A. EMBO J., 17, 6327-6336. (Pubitemid 28497804)
    • (1998) EMBO Journal , vol.17 , Issue.21 , pp. 6327-6336
    • Blaiseau, P.-L.1    Thomas, D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.