ITM Probe: Analyzing information flow in protein networks

Bioinformatics

Volumn 25, Issue 18, 2009, Pages 2447-2449

  Stojmirović, Aleksandar ^a   Yu, Yi Kuo ^a  

^a NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE ACETYLTRANSFERASE; RNA POLYMERASE II;

ACCESS TO INFORMATION; ARTICLE; COMPUTER GRAPHICS; COMPUTER MODEL; COMPUTER PROGRAM; DATA ANALYSIS; HYPOTHESIS; INFORMATION PROCESSING; INTERNET; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN INTERACTION;

COMPUTATIONAL BIOLOGY; DATABASES, PROTEIN; PROTEIN INTERACTION MAPPING; PROTEINS; SOFTWARE;

EID: 69849111694     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btp398     Document Type: Article

References (11)

1. Ashburner,M. et al. (2000) Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet., 25, 25-29.
2. Bader,S. et al. (2008) Interaction networks for systems biology. FEBS Lett., 582, 1220-1224.
3. Boyle,E.I. et al. (2004) GO::TermFinder - open source software for accessing gene ontology information and finding significantly enriched gene ontology terms associated with a list of genes. Bioinformatics 20, 3710-3715.
4. Gansner,E.R. and North,S.C. (2000) An open graph visualization system and its applications to software engineering. Software - Practice and Experience, 30, 1203-1233.
5. Nabieva,E. et al. (2005) Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps. Bioinformatics, 21 (Suppl. 1), 302-310.
6. Stark,C. et al. (2006) BioGRID: A general repository for interaction datasets. Nucleic Acids Res., 34, D535-D539.
7. Steffen,M. et al. (2002) Automated modelling of signal transduction networks. BMC Bioinformatics, 3, 34.
8. Sterner,D.E. and Berger,S.L. (2000) Acetylation of histones and transcription-related factors. Microbiol. Mol. Biol. Rev., 64 435-459.
9. Stojmirović,A. and Yu,Y.-K. (2007) Information flow in interaction networks. J. Comput. Biol., 14, 1115-1143.
10. Suthram,S. et al. (2008) eQED: An efficient method for interpreting eQTL associations using protein networks. Mol. Syst. Biol., 4, 162.
11. Tu,Z. et al. (2006) An integrative approach for causal gene identification and gene regulatory pathway inference. Bioinformatics 22, e489-e496.