-
1
-
-
0000501656
-
-
Information theory and an extension of the maximum likelihood principle. In: Petrov, B.N., Csaki, F. (Eds.), 2nd International Symposium on Information Theory. Akademiai Kiado, Budapest, Hungary
-
Akaike, H., 1973. Information theory and an extension of the maximum likelihood principle. In: Petrov, B.N., Csaki, F. (Eds.), 2nd International Symposium on Information Theory. Akademiai Kiado, Budapest, Hungary, pp. 267-281.
-
(1973)
, pp. 267-281
-
-
Akaike, H.1
-
2
-
-
0027070132
-
Restrictable DNA from sloughed cetacean skin; its potential for use in population analysis
-
Amos W., Whitehead H., Ferrari M., Glockner Ferrari D., Payne R., Gordon J. Restrictable DNA from sloughed cetacean skin; its potential for use in population analysis. Mar. Mamm. Sci. 1992, 8:275-283.
-
(1992)
Mar. Mamm. Sci.
, vol.8
, pp. 275-283
-
-
Amos, W.1
Whitehead, H.2
Ferrari, M.3
Glockner Ferrari, D.4
Payne, R.5
Gordon, J.6
-
3
-
-
84889692418
-
-
AmphibiaWeb. Information on Amphibian Biology and Conservation. Berkeley, California. (web application, accessed 13.12.11).
-
AmphibiaWeb, 2011. Information on Amphibian Biology and Conservation. Berkeley, California. (web application, accessed 13.12.11). http://amphibiaweb.org/.
-
(2011)
-
-
-
4
-
-
0036909632
-
Estimating divergence times from molecular data on phylogenetic and population genetic timescales
-
Arbogast B.S., Edwards S.V., Wakeley J., Beerli P., Slowinski J.B. Estimating divergence times from molecular data on phylogenetic and population genetic timescales. Ann. Rev. Ecol. Syst. 2002, 33:707-740.
-
(2002)
Ann. Rev. Ecol. Syst.
, vol.33
, pp. 707-740
-
-
Arbogast, B.S.1
Edwards, S.V.2
Wakeley, J.3
Beerli, P.4
Slowinski, J.B.5
-
5
-
-
0036699888
-
The utility of the incongruence length difference test
-
Barker F.K., Lutzoni F.M. The utility of the incongruence length difference test. Syst. Biol. 2002, 51:625-637.
-
(2002)
Syst. Biol.
, vol.51
, pp. 625-637
-
-
Barker, F.K.1
Lutzoni, F.M.2
-
6
-
-
13144276361
-
Comparative mtDNA phylogeography of neotropical freshwater fishes: testing shared history to infer the evolutionary landscape of lower Central America
-
Bermingham E., Martin A.P. Comparative mtDNA phylogeography of neotropical freshwater fishes: testing shared history to infer the evolutionary landscape of lower Central America. Mol. Ecol. 1998, 7:499-517.
-
(1998)
Mol. Ecol.
, vol.7
, pp. 499-517
-
-
Bermingham, E.1
Martin, A.P.2
-
7
-
-
0035815393
-
Amphibians as indicators of early Tertiary " Out-of-India" dispersal of vertebrates
-
Bossuyt F., Milinkovitch M.C. Amphibians as indicators of early Tertiary " Out-of-India" dispersal of vertebrates. Science 2001, 292:93-95.
-
(2001)
Science
, vol.292
, pp. 93-95
-
-
Bossuyt, F.1
Milinkovitch, M.C.2
-
8
-
-
9944255059
-
Partitioned Bayesian analyses, partition choice, and the phylogenetic relationships of scincid lizards
-
Brandley M., Schmitz A., Reeder T. Partitioned Bayesian analyses, partition choice, and the phylogenetic relationships of scincid lizards. Syst. Biol. 2005, 54:373-390.
-
(2005)
Syst. Biol.
, vol.54
, pp. 373-390
-
-
Brandley, M.1
Schmitz, A.2
Reeder, T.3
-
9
-
-
33645007877
-
Bayesian mixed models and the phylogeny of pitvipers (Viperidae: Serpentes)
-
Castoe T., Parkinson C. Bayesian mixed models and the phylogeny of pitvipers (Viperidae: Serpentes). Mol. Phylogenet. Evol. 2006, 39:91-110.
-
(2006)
Mol. Phylogenet. Evol.
, vol.39
, pp. 91-110
-
-
Castoe, T.1
Parkinson, C.2
-
10
-
-
27744467658
-
Modeling nucleotide evolution at the mesoscale: the phylogeny of the Neotropical pitvipers of the Porthidium group (Viperidae: Crotalinae)
-
Castoe T., Sasa M., Parkinson C. Modeling nucleotide evolution at the mesoscale: the phylogeny of the Neotropical pitvipers of the Porthidium group (Viperidae: Crotalinae). Mol. Phylogenet. Evol. 2005, 37:881-898.
-
(2005)
Mol. Phylogenet. Evol.
, vol.37
, pp. 881-898
-
-
Castoe, T.1
Sasa, M.2
Parkinson, C.3
-
11
-
-
57549111663
-
Comparative phylogeography of pitvipers suggests a consensus of ancient Middle American highland biogeography
-
Castoe T.A., Daza J.M., Smith E.N., Sasa M.M., Kuch U., Campbell J.A., Chippindale P.T., Parkinson C.L. Comparative phylogeography of pitvipers suggests a consensus of ancient Middle American highland biogeography. J. Biogeogr. 2009, 36:88-103.
-
(2009)
J. Biogeogr.
, vol.36
, pp. 88-103
-
-
Castoe, T.A.1
Daza, J.M.2
Smith, E.N.3
Sasa, M.M.4
Kuch, U.5
Campbell, J.A.6
Chippindale, P.T.7
Parkinson, C.L.8
-
12
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol. Biol. Evol. 2000, 17:540-552.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
13
-
-
53849131727
-
A comparative study in ancestral range reconstruction methods: retracing the uncertain histories of insular lineages
-
Clark J.R., Ree R.H., Alfaro M.E., King M.G., Wagner W.L., Roalson E.H. A comparative study in ancestral range reconstruction methods: retracing the uncertain histories of insular lineages. Syst. Biol. 2008, 57:693-707.
-
(2008)
Syst. Biol.
, vol.57
, pp. 693-707
-
-
Clark, J.R.1
Ree, R.H.2
Alfaro, M.E.3
King, M.G.4
Wagner, W.L.5
Roalson, E.H.6
-
14
-
-
0001978128
-
The geologic evolution of the Central American Isthmus
-
University of Chicago Press, Chicago, J.B.C. Jackson, A.F. Budd, A.G. Coates (Eds.)
-
Coates A.G., Obando J.A. The geologic evolution of the Central American Isthmus. Evolution and Environment in Tropical America 1996, 21-56. University of Chicago Press, Chicago. J.B.C. Jackson, A.F. Budd, A.G. Coates (Eds.).
-
(1996)
Evolution and Environment in Tropical America
, pp. 21-56
-
-
Coates, A.G.1
Obando, J.A.2
-
15
-
-
84879885677
-
Early Neogene history of the Central American arc from Bocas del Toro, western Panama
-
Coates A.G., Aubry M.-P., Berggren W.A., Collins L.S., Kunk M. Early Neogene history of the Central American arc from Bocas del Toro, western Panama. GSA Bullet. 2003, 115:271-287.
-
(2003)
GSA Bullet.
, vol.115
, pp. 271-287
-
-
Coates, A.G.1
Aubry, M.-P.2
Berggren, W.A.3
Collins, L.S.4
Kunk, M.5
-
16
-
-
9244244694
-
The geology of the Darien, Panama, and the late Miocene-Pliocene collision of the Panama arc with northwestern South America
-
Coates A.G., Collins L.S., Aubry M.-P., Berggren W.A. The geology of the Darien, Panama, and the late Miocene-Pliocene collision of the Panama arc with northwestern South America. GSA Bullet. 2004, 116:1327-1344.
-
(2004)
GSA Bullet.
, vol.116
, pp. 1327-1344
-
-
Coates, A.G.1
Collins, L.S.2
Aubry, M.-P.3
Berggren, W.A.4
-
17
-
-
78149363913
-
The Great American Biotic Interchange revisited
-
Cody S., Richardson J.E., Rull V., Ellis C., Pennington R.T. The Great American Biotic Interchange revisited. Ecography 2010, 33:326-332.
-
(2010)
Ecography
, vol.33
, pp. 326-332
-
-
Cody, S.1
Richardson, J.E.2
Rull, V.3
Ellis, C.4
Pennington, R.T.5
-
18
-
-
18144383554
-
Cenozoic biogeography and evolution in direct-developing frogs of Central America (Leptodactylidae: Eleutherodactylus) as inferred from a phylogenetic analysis of nuclear and mitochondrial genes
-
Crawford A.J., Smith E.N. Cenozoic biogeography and evolution in direct-developing frogs of Central America (Leptodactylidae: Eleutherodactylus) as inferred from a phylogenetic analysis of nuclear and mitochondrial genes. Mol. Phylogenet. Evol. 2005, 35:536-555.
-
(2005)
Mol. Phylogenet. Evol.
, vol.35
, pp. 536-555
-
-
Crawford, A.J.1
Smith, E.N.2
-
19
-
-
36348957296
-
The role of tropical dry forest as a long-term barrier to dispersal: a comparative phylogeographical analysis of dry forest tolerant and intolerant frogs
-
Crawford A.J., Bermingham E., Polanía C. The role of tropical dry forest as a long-term barrier to dispersal: a comparative phylogeographical analysis of dry forest tolerant and intolerant frogs. Mol. Ecol. 2007, 16:4789-4807.
-
(2007)
Mol. Ecol.
, vol.16
, pp. 4789-4807
-
-
Crawford, A.J.1
Bermingham, E.2
Polanía, C.3
-
20
-
-
77956367957
-
Epidemic disease decimates amphibian abundance, species diversity, and evolutionary history in the highlands of central Panama
-
Crawford A.J., Lips K.R., Bermingham E. Epidemic disease decimates amphibian abundance, species diversity, and evolutionary history in the highlands of central Panama. Proc. Natl. Acad. Sci. USA 2010, 107:13777-13782.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 13777-13782
-
-
Crawford, A.J.1
Lips, K.R.2
Bermingham, E.3
-
21
-
-
77952593124
-
A new species of Pristimantis (Anura: Strabomantidae) from the Pacific coast of the Darien Province, Panama, with a molecular analysis of its phylogenetic position
-
Crawford A.J., Ryan M.J., Jaramillo C.A. A new species of Pristimantis (Anura: Strabomantidae) from the Pacific coast of the Darien Province, Panama, with a molecular analysis of its phylogenetic position. Herpetologica 2010, 66:192-206.
-
(2010)
Herpetologica
, vol.66
, pp. 192-206
-
-
Crawford, A.J.1
Ryan, M.J.2
Jaramillo, C.A.3
-
22
-
-
39749124323
-
The Great American Interchange in birds: a phylogenetic perspective with the genus Trogon
-
Dacosta J.M., Klicka J. The Great American Interchange in birds: a phylogenetic perspective with the genus Trogon. Mol. Ecol. 2008, 17:1328-1343.
-
(2008)
Mol. Ecol.
, vol.17
, pp. 1328-1343
-
-
Dacosta, J.M.1
Klicka, J.2
-
23
-
-
78651261770
-
Using regional comparative phylogeographic data from snake lineages to infer historical processes in Middle America
-
Daza J.M., Castoe T.A., Parkinson C.L. Using regional comparative phylogeographic data from snake lineages to infer historical processes in Middle America. Ecography 2010, 33:343-354.
-
(2010)
Ecography
, vol.33
, pp. 343-354
-
-
Daza, J.M.1
Castoe, T.A.2
Parkinson, C.L.3
-
24
-
-
0041903765
-
Toward an integrative historical biogeography
-
Donoghue M.J., Moore B.R. Toward an integrative historical biogeography. Integr. Comp. Biol. 2003, 43:261-270.
-
(2003)
Integr. Comp. Biol.
, vol.43
, pp. 261-270
-
-
Donoghue, M.J.1
Moore, B.R.2
-
26
-
-
38649110663
-
BEAST: Bayesian evolutionary analysis by sampling trees
-
Drummond A.J., Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 2007, 7:214.
-
(2007)
BMC Evol. Biol.
, vol.7
, pp. 214
-
-
Drummond, A.J.1
Rambaut, A.2
-
27
-
-
0038547822
-
-
The hylid frogs of Middle America, vol 2. Contributions to Herpetology
-
Duellman, W.E., 2001. The hylid frogs of Middle America, vol 2. Contributions to Herpetology 18, 695-1158.
-
(2001)
, vol.18
, pp. 695-1158
-
-
Duellman, W.E.1
-
28
-
-
84856255769
-
Fracturing of the Panamanian Isthmus during initial collision with South America
-
Farris D.W., Jaramillo C., Bayona G., Restrepo-Moreno S.A., Montes C., Cardona A., Mora A., Speakman R.J., Glascock M.D., Valencia V. Fracturing of the Panamanian Isthmus during initial collision with South America. Geology 2011, 39:1007-1010.
-
(2011)
Geology
, vol.39
, pp. 1007-1010
-
-
Farris, D.W.1
Jaramillo, C.2
Bayona, G.3
Restrepo-Moreno, S.A.4
Montes, C.5
Cardona, A.6
Mora, A.7
Speakman, R.J.8
Glascock, M.D.9
Valencia, V.10
-
29
-
-
0000461280
-
Confidence limits on phylogenies: an approach using the bootstrap
-
Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985, 39:783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
30
-
-
0003991673
-
-
Sinauer Associates, Sunderland, Massachusetts
-
Felsenstein J. Inferring Phylogenies 2004, Sinauer Associates, Sunderland, Massachusetts.
-
(2004)
Inferring Phylogenies
-
-
Felsenstein, J.1
-
31
-
-
0028528103
-
DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates
-
Folmer O., Black M., Hoeh W., Lutz R., Vrijenhoek R. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol. Mar. Biol. Biotechnol. 1994, 3:294-299.
-
(1994)
Mol. Mar. Biol. Biotechnol.
, vol.3
, pp. 294-299
-
-
Folmer, O.1
Black, M.2
Hoeh, W.3
Lutz, R.4
Vrijenhoek, R.5
-
32
-
-
84889741001
-
-
Amphibian Species of the World: An Online reference. Version 5.3.
-
Frost, D., 2009. Amphibian Species of the World: An Online reference. Version 5.3. http://research.amnh.org/herpetology/amphibian/index.html.
-
(2009)
-
-
Frost, D.1
-
33
-
-
33745748862
-
The amphibian tree of life
-
Frost D.R., Grant T., Faivovich J., Baina R.H., Haas A., Haddad C.F., de Sá R.O., Channing A., Wilkinson M., Donnellan S.C., Raxworthy C.J., Campbell J.A., Blotto B.L., Moler P., Drewes R.C., Nussbaum R.A., Lynch J.D., Green D.M., Wheeler W.C. The amphibian tree of life. Bull. Am. Mus. Nat. Hist. 2006, 297:1-291.
-
(2006)
Bull. Am. Mus. Nat. Hist.
, vol.297
, pp. 1-291
-
-
Frost, D.R.1
Grant, T.2
Faivovich, J.3
Baina, R.H.4
Haas, A.5
Haddad, C.F.6
de Sá, R.O.7
Channing, A.8
Wilkinson, M.9
Donnellan, S.C.10
Raxworthy, C.J.11
Campbell, J.A.12
Blotto, B.L.13
Moler, P.14
Drewes, R.C.15
Nussbaum, R.A.16
Lynch, J.D.17
Green, D.M.18
Wheeler, W.C.19
-
34
-
-
47749083474
-
Phylogenetic relationships of glassfrogs (Centrolenidae) based on mitochondrial and nuclear genes
-
Guayasamin J.M., Castroviejo-Fisher S., Ayarzagüena J., Trueb L., Vilà C. Phylogenetic relationships of glassfrogs (Centrolenidae) based on mitochondrial and nuclear genes. Mol. Phylogenet. Evol. 2008, 48:574-595.
-
(2008)
Mol. Phylogenet. Evol.
, vol.48
, pp. 574-595
-
-
Guayasamin, J.M.1
Castroviejo-Fisher, S.2
Ayarzagüena, J.3
Trueb, L.4
Vilà, C.5
-
35
-
-
0005167613
-
Genetic differentiation among plethodontid salamanders (genus Bolitoglossa) in Central and South America: implications for the South American invasion
-
Hanken J., Wake D. Genetic differentiation among plethodontid salamanders (genus Bolitoglossa) in Central and South America: implications for the South American invasion. Herpetologica 1982, 38:272-287.
-
(1982)
Herpetologica
, vol.38
, pp. 272-287
-
-
Hanken, J.1
Wake, D.2
-
36
-
-
0022376704
-
Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
-
Hasegawa M., Kishino H., Yano T.-a. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 1985, 22:160-174.
-
(1985)
J. Mol. Evol.
, vol.22
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.-A.3
-
37
-
-
41649095754
-
New World direct-developing frogs (Anura: Terrarana): molecular phylogeny, classification, biogeography, and conservation
-
Hedges S.B., Duellman W.E., Heinicke M.P. New World direct-developing frogs (Anura: Terrarana): molecular phylogeny, classification, biogeography, and conservation. Zootaxa 2008, 1737:1-182.
-
(2008)
Zootaxa
, vol.1737
, pp. 1-182
-
-
Hedges, S.B.1
Duellman, W.E.2
Heinicke, M.P.3
-
38
-
-
69849094979
-
A new frog family (Anura: Terrarana) from South America and an expanded direct-developing clade revealed by molecular phylogeny
-
Heinicke M., Duellman W., Trueb L., Means D., MacCulloch R., Hedges S. A new frog family (Anura: Terrarana) from South America and an expanded direct-developing clade revealed by molecular phylogeny. Zootaxa 2009, 2211:1-35.
-
(2009)
Zootaxa
, vol.2211
, pp. 1-35
-
-
Heinicke, M.1
Duellman, W.2
Trueb, L.3
Means, D.4
MacCulloch, R.5
Hedges, S.6
-
39
-
-
34547214512
-
Major Caribbean and Central American frog faunas originated by ancient oceanic dispersal
-
Heinicke M.P., Duellman W.E., Hedges S.B. Major Caribbean and Central American frog faunas originated by ancient oceanic dispersal. Proc. Natl. Acad. Sci. USA 2007, 104:10092-10097.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 10092-10097
-
-
Heinicke, M.P.1
Duellman, W.E.2
Hedges, S.B.3
-
40
-
-
34347329101
-
Calibrating molecular estimates of substitution rates and divergence times in birds
-
Ho S.Y.W. Calibrating molecular estimates of substitution rates and divergence times in birds. J. Avian Biol. 2007, 38:409-414.
-
(2007)
J. Avian Biol.
, vol.38
, pp. 409-414
-
-
Ho, S.Y.W.1
-
41
-
-
3142774290
-
A new species of Eleutherodactylus (Anura: Leptodactylidae) from the Darién Province
-
Ibáñez R., Crawford A.J. A new species of Eleutherodactylus (Anura: Leptodactylidae) from the Darién Province. Panama. J. Herpetol. 2004, 38:240-244.
-
(2004)
Panama. J. Herpetol.
, vol.38
, pp. 240-244
-
-
Ibáñez, R.1
Crawford, A.J.2
-
42
-
-
0009382443
-
Paleogeography of the Caribbean region: implications for Cenozoic biogeography
-
Iturralde M.A., MacPhee R.D.E. Paleogeography of the Caribbean region: implications for Cenozoic biogeography. Bull. Am. Mus. Nat. Hist. 1999, 238:1-96.
-
(1999)
Bull. Am. Mus. Nat. Hist.
, vol.238
, pp. 1-96
-
-
Iturralde, M.A.1
MacPhee, R.D.E.2
-
44
-
-
77955019084
-
MAFFT version 6: parallelization of the MAFFT multiple sequence alignment program
-
Katoh K., Toh H. MAFFT version 6: parallelization of the MAFFT multiple sequence alignment program. Bioinformatics 2010, 26:1899-1900.
-
(2010)
Bioinformatics
, vol.26
, pp. 1899-1900
-
-
Katoh, K.1
Toh, H.2
-
45
-
-
27744460350
-
Was southern Central America an archipelago or a peninsula in the middle Miocene? A test using land-mammal body size
-
Kirby M., MacFadden B. Was southern Central America an archipelago or a peninsula in the middle Miocene? A test using land-mammal body size. Palaeogeogr. Palaeoclimatol. Palaeoecol. 2005, 228:193-202.
-
(2005)
Palaeogeogr. Palaeoclimatol. Palaeoecol.
, vol.228
, pp. 193-202
-
-
Kirby, M.1
MacFadden, B.2
-
46
-
-
34248670406
-
Phylogeny of the Procyonidae (Mammalia: Carnivora): molecules, morphology and the great American interchange
-
Koepfli K.P., Gompper M.E., Eizirik E., Ho C.C., Linden L., Maldonado J.E., Wayne R.K. Phylogeny of the Procyonidae (Mammalia: Carnivora): molecules, morphology and the great American interchange. Mol. Phylogenet. Evol. 2007, 43:1076-1095.
-
(2007)
Mol. Phylogenet. Evol.
, vol.43
, pp. 1076-1095
-
-
Koepfli, K.P.1
Gompper, M.E.2
Eizirik, E.3
Ho, C.C.4
Linden, L.5
Maldonado, J.E.6
Wayne, R.K.7
-
47
-
-
0003372097
-
-
Frogs of the Genus Eleutherodactylus in Western Ecuador. University of Kansas Special Publication
-
Lynch, J.D., Duellman, W.E., 1997. Frogs of the Genus Eleutherodactylus in Western Ecuador. University of Kansas Special Publication 23, pp. 1-236.
-
(1997)
, vol.23
, pp. 1-236
-
-
Lynch, J.D.1
Duellman, W.E.2
-
48
-
-
4644349606
-
-
Sinauer Associates, Inc., Sunderland, Massachusetts
-
Maddison D.R., Maddison W.P. MacClade 4.08 2005, Sinauer Associates, Inc., Sunderland, Massachusetts.
-
(2005)
MacClade 4.08
-
-
Maddison, D.R.1
Maddison, W.P.2
-
49
-
-
84889711703
-
-
Mesquite 2.74: A Modular System for Evolutionary Analysis .
-
Maddison, W.P., Maddison, D.R., 2009. Mesquite 2.74: A Modular System for Evolutionary Analysis http://mesquiteproject.org.
-
(2009)
-
-
Maddison, W.P.1
Maddison, D.R.2
-
50
-
-
0020454329
-
Mammalian evolution and the great American interchange
-
Marshall L.G., Webb S., Sepkoski J., Raup D. Mammalian evolution and the great American interchange. Science 1982, 215:1351-1357.
-
(1982)
Science
, vol.215
, pp. 1351-1357
-
-
Marshall, L.G.1
Webb, S.2
Sepkoski, J.3
Raup, D.4
-
51
-
-
0024233246
-
Land mammals and the Great American Interchange
-
Marshall L.G. Land mammals and the Great American Interchange. Am. Sci. 1988, 76:380-388.
-
(1988)
Am. Sci.
, vol.76
, pp. 380-388
-
-
Marshall, L.G.1
-
52
-
-
0001922275
-
Albumin evolution in tropical poison frogs (Dendrobatidae): a preliminary report
-
Maxson L.R., Myers C.W. Albumin evolution in tropical poison frogs (Dendrobatidae): a preliminary report. Biotropica 1985, 17:50-56.
-
(1985)
Biotropica
, vol.17
, pp. 50-56
-
-
Maxson, L.R.1
Myers, C.W.2
-
53
-
-
29144473686
-
DNA barcoding: error rates based on comprehensive sampling
-
Meyer C., Paulay G. DNA barcoding: error rates based on comprehensive sampling. PLoS Biol. 2005, 3:2229.
-
(2005)
PLoS Biol.
, vol.3
, pp. 2229
-
-
Meyer, C.1
Paulay, G.2
-
54
-
-
4344656120
-
Fine scale endemism on coral reefs: archipelagic differentiation in turbinid gastropods
-
Meyer C.P., Geller J.B., Paulay G. Fine scale endemism on coral reefs: archipelagic differentiation in turbinid gastropods. Evolution 2005, 59:113-125.
-
(2005)
Evolution
, vol.59
, pp. 113-125
-
-
Meyer, C.P.1
Geller, J.B.2
Paulay, G.3
-
55
-
-
84889762150
-
-
The CIPRES Portals. CIPRES. < (accessed 06.01.10).
-
Miller, M., Holder, M., Vos, R., Midford, P., Liebowitz, T., Chan, L., Hoover, P., Warnow, T., 2010. The CIPRES Portals. CIPRES. < (accessed 06.01.10). http://www.phylo.org/sub_sections/portal.
-
(2010)
-
-
Miller, M.1
Holder, M.2
Vos, R.3
Midford, P.4
Liebowitz, T.5
Chan, L.6
Hoover, P.7
Warnow, T.8
-
56
-
-
70450180149
-
Community assembly through evolutionary diversification and dispersal in Middle American treefrogs
-
Moen D.S., Smith S.A., Wiens J.J. Community assembly through evolutionary diversification and dispersal in Middle American treefrogs. Evolution 2009, 63:3228-3247.
-
(2009)
Evolution
, vol.63
, pp. 3228-3247
-
-
Moen, D.S.1
Smith, S.A.2
Wiens, J.J.3
-
57
-
-
33847002822
-
The great American Biotic Interchange in Florida
-
Morgan G. The great American Biotic Interchange in Florida. Bull. Fla. Mus. Nat. Hist. 2005, 45:271-311.
-
(2005)
Bull. Fla. Mus. Nat. Hist.
, vol.45
, pp. 271-311
-
-
Morgan, G.1
-
58
-
-
84856240814
-
-
MrModeltest 2.3. Computer Program Distributed by the Author.
-
Nylander, J.A.A., 2004. MrModeltest 2.3. Computer Program Distributed by the Author.
-
(2004)
-
-
Nylander, J.A.A.1
-
59
-
-
1642341403
-
Bayesian phylogenetic analysis of combined data
-
Nylander J.A.A., Ronquist F., Huelsenbeck J.P., Nieves-Aldrey J.L. Bayesian phylogenetic analysis of combined data. Syst. Biol. 2004, 53:47-67.
-
(2004)
Syst. Biol.
, vol.53
, pp. 47-67
-
-
Nylander, J.A.A.1
Ronquist, F.2
Huelsenbeck, J.P.3
Nieves-Aldrey, J.L.4
-
60
-
-
34248392242
-
Environmental change preceded Caribbean extinction by 2 million years
-
O'Dea A., Jackson J.B.C., Fortunato H., Smith J.T., D'Croz L., Johnson K.G., Todd J.A. Environmental change preceded Caribbean extinction by 2 million years. Proc. Natl. Acad. Sci. USA 2007, 104:5501-5506.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 5501-5506
-
-
O'Dea, A.1
Jackson, J.B.C.2
Fortunato, H.3
Smith, J.T.4
D'Croz, L.5
Johnson, K.G.6
Todd, J.A.7
-
61
-
-
38349011327
-
Systematics of the Eleutherodactylus fraudator species group (Anura: Brachycephalidae)
-
Padial J., Castroviejo-Fisher S., Köhler J., Domic E., De la Riva I. Systematics of the Eleutherodactylus fraudator species group (Anura: Brachycephalidae). Herpetol. Monogr. 2007, 21:213-240.
-
(2007)
Herpetol. Monogr.
, vol.21
, pp. 213-240
-
-
Padial, J.1
Castroviejo-Fisher, S.2
Köhler, J.3
Domic, E.4
De la Riva, I.5
-
62
-
-
58149357490
-
Integrative taxonomy reveals cryptic Amazonian species of Pristimantis (Anura: Strabomantidae)
-
Padial J.M., de la Riva I. Integrative taxonomy reveals cryptic Amazonian species of Pristimantis (Anura: Strabomantidae). Zool. J. Linn. Soc. 2009, 155:97-122.
-
(2009)
Zool. J. Linn. Soc.
, vol.155
, pp. 97-122
-
-
Padial, J.M.1
de la Riva, I.2
-
63
-
-
84856267067
-
-
The Simple Fool's Guide to PCR, Version 2.0, Privately Published, Univ. Hawaii.
-
Palumbi, S., Martin, A., Romano, S., McMillan, W., Stice, L., Grabowski, G., 1991. The Simple Fool's Guide to PCR, Version 2.0, Privately Published, Univ. Hawaii.
-
(1991)
-
-
Palumbi, S.1
Martin, A.2
Romano, S.3
McMillan, W.4
Stice, L.5
Grabowski, G.6
-
64
-
-
0036395769
-
Evolutionary history of the genus Rhamdia (Teleostei: Pimelodidae) in Central America
-
Perdices A., Bermingham E., Montilla A., Doadrio I. Evolutionary history of the genus Rhamdia (Teleostei: Pimelodidae) in Central America. Mol. Phylogenet. Evol. 2002, 25:172-189.
-
(2002)
Mol. Phylogenet. Evol.
, vol.25
, pp. 172-189
-
-
Perdices, A.1
Bermingham, E.2
Montilla, A.3
Doadrio, I.4
-
65
-
-
9644301241
-
Model selection and model averaging in phylogenetics: advantages of Akaike information criterion and Bayesian approaches over likelihood ratio tests
-
Posada D., Buckley T. Model selection and model averaging in phylogenetics: advantages of Akaike information criterion and Bayesian approaches over likelihood ratio tests. Syst. Biol. 2004, 53:793-808.
-
(2004)
Syst. Biol.
, vol.53
, pp. 793-808
-
-
Posada, D.1
Buckley, T.2
-
66
-
-
0031773680
-
MODELTEST: testing the model of DNA substitution
-
Posada D., Crandall K. MODELTEST: testing the model of DNA substitution. Bioinformatics 1998, 14:817-818.
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.2
-
67
-
-
80052717965
-
-
A large-scale phylogeny of Amphibia including over 2800 species, and a revised classification of extant frogs, salamanders, and caecilians. Mol. Phylogen. Evol. (online early).
-
Pyron, R.A., Wiens, J.J., 2011. A large-scale phylogeny of Amphibia including over 2800 species, and a revised classification of extant frogs, salamanders, and caecilians. Mol. Phylogen. Evol. (online early).
-
(2011)
-
-
Pyron, R.A.1
Wiens, J.J.2
-
68
-
-
84889741074
-
-
Tracer 1.3. University of Edinburgh, Edinburgh, UK .
-
Rambaut, A., Drummond, A., 2004. Tracer 1.3. University of Edinburgh, Edinburgh, UK http://tree.bio.ed.ac.uk/software/tracer.
-
(2004)
-
-
Rambaut, A.1
Drummond, A.2
-
69
-
-
34248149943
-
-
BoLD: The barcode of life data system (). Mol. Ecol. Notes
-
Ratnasingham, S., Hebert, P.D.N., 2007. BoLD: The barcode of life data system (). Mol. Ecol. Notes 7, 355-364. http://www.barcodinglife.org.
-
(2007)
, vol.7
, pp. 355-364
-
-
Ratnasingham, S.1
Hebert, P.D.N.2
-
70
-
-
28644450963
-
A likelihood framework for inferring the evolution of geographic range on phylogenetic trees
-
Ree R., Moore B., Webb C., Donoghue M., Crandall K. A likelihood framework for inferring the evolution of geographic range on phylogenetic trees. Evolution 2005, 59:2299-2311.
-
(2005)
Evolution
, vol.59
, pp. 2299-2311
-
-
Ree, R.1
Moore, B.2
Webb, C.3
Donoghue, M.4
Crandall, K.5
-
71
-
-
47749135700
-
Maximum likelihood inference of geographic range evolution by dispersal, local extinction, and cladogenesis
-
Ree R., Smith S. Maximum likelihood inference of geographic range evolution by dispersal, local extinction, and cladogenesis. Syst. Biol. 2008, 57:4-14.
-
(2008)
Syst. Biol.
, vol.57
, pp. 4-14
-
-
Ree, R.1
Smith, S.2
-
72
-
-
33744491279
-
Colonization, population expansion, and lineage turnover: phylogeography of Mesoamerican characiform fish
-
Reeves R.G., Bermingham E. Colonization, population expansion, and lineage turnover: phylogeography of Mesoamerican characiform fish. Biol. J. Linn. Soc. Lond. 2006, 88:235-255.
-
(2006)
Biol. J. Linn. Soc. Lond.
, vol.88
, pp. 235-255
-
-
Reeves, R.G.1
Bermingham, E.2
-
73
-
-
33846556329
-
Global patterns of diversification in the history of modern amphibians
-
Roelants K., Gower D.J., Wilkinson M., Loader S.P., Biju S.D., Guillaume K., Moriau L., Bossuyt F. Global patterns of diversification in the history of modern amphibians. Proc. Natl. Acad. Sci. USA 2007, 104:887-892.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 887-892
-
-
Roelants, K.1
Gower, D.J.2
Wilkinson, M.3
Loader, S.P.4
Biju, S.D.5
Guillaume, K.6
Moriau, L.7
Bossuyt, F.8
-
74
-
-
0041386108
-
MrBayes version 3.1: Bayesian phylogenetic inference under mixed models
-
Ronquist F., Huelsenbeck J.P. MrBayes version 3.1: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
75
-
-
33645030825
-
Molecular dating of phylogenetic trees: a brief review of current methods that estimate divergence times
-
Rutschmann F. Molecular dating of phylogenetic trees: a brief review of current methods that estimate divergence times. Divers. Distrib. 2006, 12:35-48.
-
(2006)
Divers. Distrib.
, vol.12
, pp. 35-48
-
-
Rutschmann, F.1
-
76
-
-
66049152570
-
Amazonian amphibian diversity is primarily derived from Late Miocene Andean lineages
-
Santos J.C., Coloma L.A., Summers K., Caldwell J.P., Ree R., Cannatella D.C. Amazonian amphibian diversity is primarily derived from Late Miocene Andean lineages. PLoS Biol. 2009, 7:448-461.
-
(2009)
PLoS Biol.
, vol.7
, pp. 448-461
-
-
Santos, J.C.1
Coloma, L.A.2
Summers, K.3
Caldwell, J.P.4
Ree, R.5
Cannatella, D.C.6
-
77
-
-
0023375195
-
The neighbor-joining method: a new method for reconstructing phylogenetic trees
-
Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4:406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
78
-
-
0000027726
-
The enigma of the Central American herpetofauna: dispersal or vicariance?
-
Savage J.M. The enigma of the Central American herpetofauna: dispersal or vicariance?. Ann. Mo. Bot. Gard. 1982, 69:464-547.
-
(1982)
Ann. Mo. Bot. Gard.
, vol.69
, pp. 464-547
-
-
Savage, J.M.1
-
80
-
-
0032766857
-
Multiple comparisons of log-likelihoods with applications to phylogenetic inference
-
Shimodaira H., Hasegawa M. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 1999, 16:1114-1116.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1114-1116
-
-
Shimodaira, H.1
Hasegawa, M.2
-
82
-
-
84856283841
-
-
Splendid Isolation: The Curious History of South American Mammals, Yale University Press, New Haven.
-
Simpson, G.G., 1980. Splendid Isolation: The Curious History of South American Mammals, Yale University Press, New Haven.
-
(1980)
-
-
Simpson, G.G.1
-
83
-
-
38949205862
-
CO1 DNA barcoding amphibians: take the chance, meet the challenge
-
Smith M.A., Poyarkov N.A., Hebert P.D.N. CO1 DNA barcoding amphibians: take the chance, meet the challenge. Mol. Ecol. Resources 2008, 8:235-246.
-
(2008)
Mol. Ecol. Resources
, vol.8
, pp. 235-246
-
-
Smith, M.A.1
Poyarkov, N.A.2
Hebert, P.D.N.3
-
84
-
-
50249100595
-
A rapid bootstrap algorithm for the RAxML web servers
-
Stamatakis A., Hoover P., Rougemont J. A rapid bootstrap algorithm for the RAxML web servers. Syst. Biol. 2008, 57:758-771.
-
(2008)
Syst. Biol.
, vol.57
, pp. 758-771
-
-
Stamatakis, A.1
Hoover, P.2
Rougemont, J.3
-
85
-
-
84856240812
-
-
PAUP-4.0b10. Phylogenetic Analysis Using Parsimony (- and Other Methods). Sinauer Associates, Sunderland, Massachusetts.
-
Swofford, D., 2002. PAUP-4.0b10. Phylogenetic Analysis Using Parsimony (- and Other Methods). Sinauer Associates, Sunderland, Massachusetts.
-
(2002)
-
-
Swofford, D.1
-
86
-
-
0000804258
-
Tectonics of the Panama Basin, eastern Pacific
-
Van Andel T.H., Heath G.R., Malfait B.T., Hendricks D.F., Ewing J.I. Tectonics of the Panama Basin, eastern Pacific. J. Washington Acad. Sci. 1971, 82:1489-1508.
-
(1971)
J. Washington Acad. Sci.
, vol.82
, pp. 1489-1508
-
-
Van Andel, T.H.1
Heath, G.R.2
Malfait, B.T.3
Hendricks, D.F.4
Ewing, J.I.5
-
87
-
-
0002565806
-
The American herpetofauna and the interchange
-
Plenum Press, New York, F.G. Stehli, S.D. Webb (Eds.)
-
Vanzolini P.E., Heyer W.R. The American herpetofauna and the interchange. The Great American Biotic Interchange 1985, 475-487. Plenum Press, New York. F.G. Stehli, S.D. Webb (Eds.).
-
(1985)
The Great American Biotic Interchange
, pp. 475-487
-
-
Vanzolini, P.E.1
Heyer, W.R.2
-
88
-
-
1842665043
-
Phylogeography of Ptychadena mascareniensis suggests transoceanic dispersal in a widespread African Malagasy frog lineage
-
Vences M., Kosuch J., Rödel M., Lötters S., Channing A., Glaw F., Böhme W. Phylogeography of Ptychadena mascareniensis suggests transoceanic dispersal in a widespread African Malagasy frog lineage. J. Biogeogr. 2004, 31:593-601.
-
(2004)
J. Biogeogr.
, vol.31
, pp. 593-601
-
-
Vences, M.1
Kosuch, J.2
Rödel, M.3
Lötters, S.4
Channing, A.5
Glaw, F.6
Böhme, W.7
-
89
-
-
44149128163
-
Phylogeography of the Pygmy Rain Frog (Pristimantis ridens) across the lowland wet forests of isthmian Central America
-
Wang I.J., Crawford A.J., Bermingham E. Phylogeography of the Pygmy Rain Frog (Pristimantis ridens) across the lowland wet forests of isthmian Central America. Mol. Phylogenet. Evol. 2008, 47:992-1004.
-
(2008)
Mol. Phylogenet. Evol.
, vol.47
, pp. 992-1004
-
-
Wang, I.J.1
Crawford, A.J.2
Bermingham, E.3
-
90
-
-
0001192264
-
A history of savanna vertebrates in the New World. Part II: South America and the Great Interchange
-
Webb S. A history of savanna vertebrates in the New World. Part II: South America and the Great Interchange. Annu. Rev. Ecol. Syst. 1978, 9:393-426.
-
(1978)
Annu. Rev. Ecol. Syst.
, vol.9
, pp. 393-426
-
-
Webb, S.1
-
91
-
-
0002017706
-
Late Cenozoic evolution of the Neotropical mammal fauna
-
University of Chicago, Chicago, J.B.C. Jackson, A.F. Budd, A.G. Coates (Eds.)
-
Webb S.D., Rancy A. Late Cenozoic evolution of the Neotropical mammal fauna. Evolution and Environment in Tropical America 1996, 335-358. University of Chicago, Chicago. J.B.C. Jackson, A.F. Budd, A.G. Coates (Eds.).
-
(1996)
Evolution and Environment in Tropical America
, pp. 335-358
-
-
Webb, S.D.1
Rancy, A.2
-
92
-
-
33644674358
-
Biogeography of the túngara frog, Physalaemus pustulosus: a molecular perspective
-
Weigt L.A., Crawford A.J., Rand A.S., Ryan M.J. Biogeography of the túngara frog, Physalaemus pustulosus: a molecular perspective. Mol. Ecol. 2005, 14:3857-3876.
-
(2005)
Mol. Ecol.
, vol.14
, pp. 3857-3876
-
-
Weigt, L.A.1
Crawford, A.J.2
Rand, A.S.3
Ryan, M.J.4
-
94
-
-
0001485295
-
Miocene mammals and Central American seaways
-
Whitmore F.C., Stewart R.H. Miocene mammals and Central American seaways. Science 1965, 148:180-185.
-
(1965)
Science
, vol.148
, pp. 180-185
-
-
Whitmore, F.C.1
Stewart, R.H.2
-
95
-
-
0032226105
-
Combining data sets with different phylogenetic histories
-
Wiens J. Combining data sets with different phylogenetic histories. Syst. Biol. 1998, 47:568-581.
-
(1998)
Syst. Biol.
, vol.47
, pp. 568-581
-
-
Wiens, J.1
-
96
-
-
34547681631
-
Global patterns of diversification and species richness in Amphibians
-
Wiens J. Global patterns of diversification and species richness in Amphibians. Am. Nat. 2007, 170:S86-S106.
-
(2007)
Am. Nat.
, vol.170
-
-
Wiens, J.1
-
97
-
-
79955163449
-
Re-evolution of lost mandibular teeth in frogs after more than 200 million years, and re-evaluating Dollo's law
-
Wiens J. Re-evolution of lost mandibular teeth in frogs after more than 200 million years, and re-evaluating Dollo's law. Evolution 2011, 65:1283-1296.
-
(2011)
Evolution
, vol.65
, pp. 1283-1296
-
-
Wiens, J.1
-
98
-
-
34247843683
-
Phylogenetic history underlies elevational biodiversity patterns in tropical salamanders
-
Wiens J., Parra-Olea G., García-París M., Wake D.B. Phylogenetic history underlies elevational biodiversity patterns in tropical salamanders. Proc. Roy. Soc. B 2007, 274:919-928.
-
(2007)
Proc. Roy. Soc. B
, vol.274
, pp. 919-928
-
-
Wiens, J.1
Parra-Olea, G.2
García-París, M.3
Wake, D.B.4
-
99
-
-
84931748977
-
Phylogenetic origins of local-scale diversity patterns and the causes of Amazonian megadiversity
-
Wiens J., Pyron R.A., Moen D.S. Phylogenetic origins of local-scale diversity patterns and the causes of Amazonian megadiversity. Ecol. Lett. 2011, 14:643-652.
-
(2011)
Ecol. Lett.
, vol.14
, pp. 643-652
-
-
Wiens, J.1
Pyron, R.A.2
Moen, D.S.3
-
100
-
-
0031472784
-
Phylogeography of the bushmaster (Lachesis muta: Viperidae): implications for neotropical biogeography, systematics, and conservation
-
Zamudio K., Greene H. Phylogeography of the bushmaster (Lachesis muta: Viperidae): implications for neotropical biogeography, systematics, and conservation. Biol. J. Linn. Soc. Lond. 1997, 62:421-442.
-
(1997)
Biol. J. Linn. Soc. Lond.
, vol.62
, pp. 421-442
-
-
Zamudio, K.1
Greene, H.2
-
101
-
-
0141501460
-
Phylogeography of the harlequin beetle-riding pseudoscorpion and the rise of the Isthmus of Panama
-
Zeh J.A., Zeh D.W., Bonilla M.M. Phylogeography of the harlequin beetle-riding pseudoscorpion and the rise of the Isthmus of Panama. Mol. Ecol. 2003, 12:2759-2769.
-
(2003)
Mol. Ecol.
, vol.12
, pp. 2759-2769
-
-
Zeh, J.A.1
Zeh, D.W.2
Bonilla, M.M.3
|