Resolving structure and mechanical properties at the nanoscale of viruses with frequency modulation atomic force microscopy

PLoS ONE

Volumn 7, Issue 1, 2012, Pages

  Martinez Martin, David ^a   Carrasco, Carolina ^a,b   Hernando Perez, Mercedes ^a   de Pablo, Pedro J ^a   Gomez Herrero, Julio ^a   Perez, Rebeca ^c   Mateu, Mauricio G ^c   Carrascosa, Jose L ^b   Kiracofe, Daniel ^d   Melcher, John ^d   Raman, Arvind ^d  

^a UNIVERSIDAD AUTÓNOMA DE MADRID   (Spain)

^b CENTRO NACIONAL DE BIOTECNOLOGÍA   (Spain)

^c CENTRO DE BIOLOGÍA MOLECULAR SEVERO OCHOA   (Spain)

^d PURDUE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ARTICLE; ATOMIC FORCE MICROSCOPY; BIOTECHNOLOGY; CELL DIFFERENTIATION; CONTROLLED STUDY; FREQUENCY MODULATION ATOMIC FORCE MICROSCOPY; IMAGE ANALYSIS; IMAGE PROCESSING; NANOANALYSIS; NANOIMAGING; NON INVASIVE PROCEDURE; NONHUMAN; VIRUS COLLAR REGION; VIRUS MORPHOLOGY; VIRUS PARTICLE; VIRUS PROLATE HEAD; VIRUS TAIL; ANIMAL; BIOMECHANICS; CHEMISTRY; MECHANICS; METHODOLOGY; MOUSE; PARVOVIRUS; SURFACE PROPERTY; VIRION;

MIMIVIRUS;

ALUMINUM SILICATE; MICA; NANOMATERIAL;

ALUMINUM SILICATES; ANIMALS; BIOMECHANICS; MECHANICAL PROCESSES; MICE; MICROSCOPY, ATOMIC FORCE; NANOSTRUCTURES; PARVOVIRUS; SURFACE PROPERTIES; VIRION;

EID: 84856244405     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0030204     Document Type: Article

References (36)

1. Flint JS, Enquist LW, Racaniello V, Shalka AM, (2004) Principles of virology, ASM Press, Washington D.C.
2. Purohit PK, Kondev J, Phillips R, (2003) Mechanics of DNA packaging in viruses. P NATL ACAD SCI USA 100: 3173-3178.
3. Cordova A, Deserno M, Gelbart WM, Ben-Shaul A, (2003) Osmotic shock and the strength of viral capsids. Biophys J 85: 70-74.
4. Carrasco C, Douas M, Miranda R, Castellanos M, Serena PA, et al. (2009) The capillarity of nanometric water menisci confined inside closed-geometry viral cages. P NATL ACAD SCI USA 106: 5475-5480.
5. Pugno NM, (2008) Flexible nanovectors. Journal of Physics-Condensed Matter 20.
6. Fischlechner M, Donath E, (2007) Viruses as building blocks for materials and devices. Angewandte Chemie-International Edition 46: 3184-3193.
7. Young M, Willits D, Uchida M, Douglas T, (2008) Plant viruses as biotemplates for materials and their use in nanotechnology. Annual Review of Phytopathology 46: 361-384.
8. Blum AS, Soto CM, Wilson CD, Brower TL, Pollack SK, et al. (2005) An engineered virus as a scaffold for three-dimensional self-assembly on the nanoscale. Small 1: 702-706.
9. Ivanovska IL, de Pablo PJ, Ibarra B, Sgalari G, MacKintosh FC, et al. (2004) Bacteriophage capsids: Tough nanoshells with complex elastic properties. P NATL ACAD SCI USA 101: 7600-7605.
10. Carrasco C, Carreira A, Schaap IAT, Serena PA, Gomez-Herrero J, et al. (2006) DNA-mediated anisotropic mechanical reinforcement of a virus. P NATL ACAD SCI USA 103: 13706-13711.
11. Carrasco C, Castellanos M, de Pablo PJ, Mateu MG, (2008) Manipulation of the mechanical properties of a virus by protein engineering. P NATL ACAD SCI USA 105: 4150-4155.
12. Roos WH, Bruinsma R, Wuite GJL, (2010) Physical virology. Nature Physics 6: 733-743.
13. Calabri L, Pugno N, Rota A, Marchetto D, Valeri S, (2007) Nanoindentation shape effect: experiments, simulations and modelling. Journal of Physics-Condensed Matter 19.
14. Ohnesorge F, Binnig G, (1993) True Atomic-Resolution by Atomic Force Microscopy through Repulsive and Attractive Forces. Science 260: 1451-1456.
15. Muller DJ, Schabert FA, Buldt G, Engel A, (1995) Imaging Purple Membranes in Aqueous-Solutions at Subnanometer Resolution by Atomic-Force Microscopy. Biophys J 68: 1681-1686.
16. Xu X, Carrasco C, de Pablo PJ, Gomez-Herrero J, Raman A, (2008) Unmasking imaging forces on soft biological samples in liquids when using dynamic atomic force microscopy: A case study on viral capsids. Biophys J 95: 2520-2528.
17. Voitchovsky K, Kuna JJ, Contera SA, Tosatti E, Stellacci F, (2010) Direct mapping of the solid-liquid adhesion energy with subnanometre resolution. Nature Nanotechnology 5: 401-405.
18. de Pablo PJ, Colchero J, Gomez-Herrero J, Baro AM, (1998) Jumping mode scanning force microscopy. Appl Phys Lett 73: 3300-3302.
19. Moreno-Herrero F, de Pablo PJ, Fernandez-Sanchez R, Colchero J, Gomez-Herrero J, et al. (2002) Scanning force microscopy jumping and tapping modes in liquids. Appl Phys Lett 81: 2620-2622.
20. Xiao C, Kuznetsov YG, Sun SY, Hafenstein SL, Kostyuchenko VA, et al. (2009) Structural Studies of the Giant Mimivirus. Plos Biology 7: 958-966.
21. Giessibl FJ, Bielefeldt H, (2000) Physical interpretation of frequency-modulation atomic force microscopy. Phys Rev B 61: 9968-9971.
22. Fukuma T, Kobayashi K, Matsushige K, Yamada H, (2005) True atomic resolution in liquid by frequency-modulation atomic force microscopy. Appl Phys Lett 87.
23. Kontou M, Govindasamy L, Nam HJ, Bryant N, Llamas-Saiz AL, et al. (2005) Structural determinants of tissue tropism and in vivo pathogenicity for the parvovirus minute virus of mice. Journal of Virology 79: 10931-10943.
24. Tang JH, Olson N, Jardine PJ, Girimes S, Anderson DL, et al. (2008) DNA poised for release in bacteriophage phi 29. Structure 16: 935-943.
25. Villarrubia JS, (1997) Algorithms for scanned probe microscope image simulation, surface reconstruction, and tip estimation. Journal of Research of the National Institute of Standards and Technology 102: 425-454.
26. Xiang Y, Morais MC, Battisti AJ, Grimes S, Jardine PJ, et al. (2006) Structural changes of bacteriophage phi 29 upon DNA packaging and release. Embo Journal 25: 5229-5239.
27. Higgins MJ, Polcik M, Fukuma T, Sader JE, Nakayama Y, et al. (2006) Structured water layers adjacent to biological membranes. Biophys J 91: 2532-2542.
28. Basak S, Raman A, (2007) Dynamics of tapping mode atomic force microscopy in liquids: Theory and experiments. Appl Phys Lett 91.
29. Xu X, Melcher J, Basak S, Reifenberger R, Raman A, (2009) Compositional Contrast of Biological Materials in Liquids Using the Momentary Excitation of Higher Eigenmodes in Dynamic Atomic Force Microscopy. Phys Rev Lett 102.
30. Horcas I, Fernandez R, Gomez-Rodriguez JM, Colchero J, Gomez-Herrero J, et al. (2007) WSXM: A software for scanning probe microscopy and a tool for nanotechnology. Rev Sci Instrum 78.
31. Melcher J, Hu SQ, Raman A, (2008) Invited Article: VEDA: A web-based virtual environment for dynamic atomic force microscopy. Rev Sci Instrum 79.
32. Melcher J, Kiracofe D, Hu S, Raman A, (2010) http://nanohub.org/resources/adac Accesed December 2011.
33. www.sigmaaldrich.com (H4875). Accesed December 2011.
34. Valpuesta JM, Carrascosa JL, (1994) Structure of Viral Connectors and Their Function in Bacteriophage Assembly and DNA Packaging. Quarterly Reviews of Biophysics 27: 107-155.
35. Yeager JG, Obrien RT, (1979) Enterovirus Inactivation in Soil. Applied and Environmental Microbiology 38: 694-701.
36. Agbandje-McKenna M, Llamas-Saiz AL, Wang F, Tattersall P, Rossmann MG, (1998) Functional implications of the structure of the murine parvovirus, minute virus of mice. Structure with Folding & Design 6: 1369-1381.