-
2
-
-
0034857262
-
DExD/H box RNA helicases: From generic motors to specific dissociation functions
-
Tanner N.K., and Linder P. DExD/H box RNA helicases: from generic motors to specific dissociation functions Mol. Cell 8 2010 251 262
-
(2010)
Mol. Cell
, vol.8
, pp. 251-262
-
-
Tanner, N.K.1
Linder, P.2
-
3
-
-
78650854687
-
RNA helicases at work: Binding and rearranging
-
Jankowsky E. RNA helicases at work: binding and rearranging Trends Biochem. Sci. 36 2011 19 29
-
(2011)
Trends Biochem. Sci.
, vol.36
, pp. 19-29
-
-
Jankowsky, E.1
-
4
-
-
0029861759
-
Vaccinia virions lacking the RNA helicase nucleoside triphosphate phosphohydrolase II are defective in early transcription
-
Gross C.H., and Shuman S. Vaccinia virions lacking the RNA helicase nucleoside triphosphate phosphohydrolase II are defective in early transcription J. Virol. 70 1996 8549 8557 (Pubitemid 26378434)
-
(1996)
Journal of Virology
, vol.70
, Issue.12
, pp. 8549-8557
-
-
Gross, C.H.1
Shuman, S.2
-
5
-
-
77954931489
-
Hepatitis C virus non-structural protein 3 (HCV NS3): A multifunctional antiviral target
-
Raney K.D., Sharma S.D., Moustafa I.M., and Cameron C.E. Hepatitis C virus non-structural protein 3 (HCV NS3): a multifunctional antiviral target J. Biol. Chem. 285 2010 22725 22731
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 22725-22731
-
-
Raney, K.D.1
Sharma, S.D.2
Moustafa, I.M.3
Cameron, C.E.4
-
6
-
-
0034719392
-
The DExH protein NPH-II is a processive and directional motor for unwinding RNA
-
DOI 10.1038/35000239
-
Jankowsky E., Gross C.H., Shuman S., and Pyle A.M. The DExH protein NPH-II is a processive and directional motor for unwinding RNA Nature 403 2000 447 451 (Pubitemid 30073096)
-
(2000)
Nature
, vol.403
, Issue.6768
, pp. 447-451
-
-
Jankowsky, E.1
Gross, C.H.2
Shuman, S.3
Pyle, A.M.4
-
7
-
-
0028817781
-
C-terminal domain of the hepatitis C virus NS3 protein contains an RNA helicase activity
-
Kim D.W., Gwack Y., Han J.H., and Choe J. C-terminal domain of the hepatitis C virus NS3 protein contains an RNA helicase activity Biochem. Biophys. Res. Commun. 215 1995 160 166
-
(1995)
Biochem. Biophys. Res. Commun.
, vol.215
, pp. 160-166
-
-
Kim, D.W.1
Gwack, Y.2
Han, J.H.3
Choe, J.4
-
8
-
-
48249113056
-
Translocation and unwinding mechanisms of RNA and DNA helicases
-
Pyle A.M. Translocation and unwinding mechanisms of RNA and DNA helicases Annu. Rev. Biophys. 37 2008 317 336
-
(2008)
Annu. Rev. Biophys.
, vol.37
, pp. 317-336
-
-
Pyle, A.M.1
-
9
-
-
0030583249
-
Characterization of RNA binding activity and RNA helicase activity of the hepatitis C virus NS3 protein
-
DOI 10.1006/bbrc.1996.1225
-
Gwack Y., Kim D.W., Han J.H., and Choe J. Characterization of RNA binding activity and RNA helicase activity of the hepatitis C virus NS3 protein Biochem. Biophys. Res. Commun. 225 1996 654 659 (Pubitemid 26355653)
-
(1996)
Biochemical and Biophysical Research Communications
, vol.225
, Issue.2
, pp. 654-659
-
-
Gwack, Y.1
Kim, D.W.2
Han, J.H.3
Choe, J.4
-
10
-
-
3342896727
-
Periodic cycles of RNA unwinding and pausing by hepatitis C virus NS3 helicase
-
DOI 10.1038/nature02704
-
Serebrov V., and Pyle A.M. Periodic cycles of RNA unwinding and pausing by hepatitis C virus NS3 helicase Nature 430 2004 476 480 (Pubitemid 38987912)
-
(2004)
Nature
, vol.430
, Issue.6998
, pp. 476-480
-
-
Serebrov, V.1
Pyle, A.M.2
-
11
-
-
0036500976
-
The hepatitis C viral NS3 protein is a processive DNA helicase with cofactor enhanced RNA unwinding
-
Pang P.S., Jankowsky E., Planet P.J., and Pyle A.M. The hepatitis C viral NS3 protein is a processive DNA helicase with cofactor enhanced RNA unwinding EMBO J. 21 2002 1168 1175
-
(2002)
EMBO J.
, vol.21
, pp. 1168-1175
-
-
Pang, P.S.1
Jankowsky, E.2
Planet, P.J.3
Pyle, A.M.4
-
12
-
-
77951251882
-
The NPH-II helicase displays efficient DNA × RNA helicase activity and a pronounced purine sequence bias
-
Taylor S.D., Solem A., Kawaoka J., and Pyle A.M. The NPH-II helicase displays efficient DNA × RNA helicase activity and a pronounced purine sequence bias J. Biol. Chem. 285 2010 11692 11703
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 11692-11703
-
-
Taylor, S.D.1
Solem, A.2
Kawaoka, J.3
Pyle, A.M.4
-
13
-
-
33749146108
-
DNA unwinding and protein displacement by superfamily 1 and superfamily 2 helicases
-
DOI 10.1093/nar/gkl501
-
Mackintosh S.G., and Raney K.D. DNA unwinding and protein displacement by superfamily 1 and superfamily 2 helicases Nucleic Acids Res. 34 2006 4154 4159 (Pubitemid 44542194)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.15
, pp. 4154-4159
-
-
Mackintosh, S.G.1
Raney, K.D.2
-
14
-
-
0029970903
-
The helicase activity associated with hepatitis C virus nonstructural protein 3 (NS3)
-
Tai C.L., Chi W.K., Chen D.S., and Hwang L.H. The helicase activity associated with hepatitis C virus nonstructural protein 3 (NS3) J. Virol. 70 1996 8477 8484
-
(1996)
J. Virol.
, vol.70
, pp. 8477-8484
-
-
Tai, C.L.1
Chi, W.K.2
Chen, D.S.3
Hwang, L.H.4
-
15
-
-
0027241018
-
Vaccinia virus RNA helicase. Directionality and substrate specificity
-
Shuman S. Vaccinia virus RNA helicase. Directionality and substrate specificity J. Biol. Chem. 268 1993 11798 11802 (Pubitemid 23168133)
-
(1993)
Journal of Biological Chemistry
, vol.268
, Issue.16
, pp. 11798-11802
-
-
Shuman, S.1
-
17
-
-
33646101028
-
Robust translocation along a molecular monorail: The NS3 helicase from hepatitis C virus traverses unusually large disruptions in its track
-
Beran R.K., Bruno M.M., Bowers H.A., Jankowsky E., and Pyle A.M. Robust translocation along a molecular monorail: the NS3 helicase from hepatitis C virus traverses unusually large disruptions in its track J. Mol. Biol. 358 2006 974 982
-
(2006)
J. Mol. Biol.
, vol.358
, pp. 974-982
-
-
Beran, R.K.1
Bruno, M.M.2
Bowers, H.A.3
Jankowsky, E.4
Pyle, A.M.5
-
18
-
-
13844321756
-
Choosing between DNA and RNA: The polymer specificity of RNA helicase NPH-II
-
DOI 10.1093/nar/gki208
-
Kawaoka J., and Pyle A.M. Choosing between DNA and RNA: the polymer specificity of RNA helicase NPH-II Nucleic Acids Res. 33 2005 644 649 (Pubitemid 40360994)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.2
, pp. 644-649
-
-
Kawaoka, J.1
Pyle, A.M.2
-
19
-
-
0026490908
-
Vaccinia virus RNA helicase: An essential enzyme related to the DE-H family of RNA-dependent NTPases
-
Shuman S. Vaccinia virus RNA helicase: an essential enzyme related to the DE-H family of RNA-dependent NTPases Proc. Natl Acad. Sci. USA 89 1992 10935 10939
-
(1992)
Proc. Natl Acad. Sci. USA
, vol.89
, pp. 10935-10939
-
-
Shuman, S.1
-
20
-
-
34047267824
-
ATP Ground- and Transition States of Bacterial Enhancer Binding AAA+ ATPases Support Complex Formation with Their Target Protein, σ54
-
DOI 10.1016/j.str.2007.02.007, PII S0969212607001062
-
+ ATPases support complex formation with their target protein, sigma54 Structure 15 2007 429 440 (Pubitemid 46551727)
-
(2007)
Structure
, vol.15
, Issue.4
, pp. 429-440
-
-
Chen, B.1
Doucleff, M.2
Wemmer, D.E.3
De Carlo, S.4
Huang, H.H.5
Nogales, E.6
Hoover, T.R.7
Kondrashkina, E.8
Guo, L.9
Nixon, B.T.10
-
21
-
-
58149481225
-
ATP hydrolysis is required for DEAD-box protein recycling but not for duplex unwinding
-
Liu F., Putnam A., and Jankowsky E. ATP hydrolysis is required for DEAD-box protein recycling but not for duplex unwinding Proc. Natl Acad. Sci. USA 105 2008 20209 20214
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 20209-20214
-
-
Liu, F.1
Putnam, A.2
Jankowsky, E.3
-
23
-
-
79952686670
-
Molecular mechanisms for the RNA-dependent ATPase activity of Upf1 and its regulation by Upf2
-
Chakrabarti S., Jayachandran U., Bonneau F., Fiorini F., Basquin C., and Domcke S. Molecular mechanisms for the RNA-dependent ATPase activity of Upf1 and its regulation by Upf2 Mol. Cell 41 2011 693 703
-
(2011)
Mol. Cell
, vol.41
, pp. 693-703
-
-
Chakrabarti, S.1
Jayachandran, U.2
Bonneau, F.3
Fiorini, F.4
Basquin, C.5
Domcke, S.6
-
24
-
-
76249111702
-
Three conformational snapshots of the hepatitis C virus NS3 helicase reveal a ratchet translocation mechanism
-
Gu M., and Rice C.M. Three conformational snapshots of the hepatitis C virus NS3 helicase reveal a ratchet translocation mechanism Proc. Natl Acad. Sci. USA 107 2010 521 528
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 521-528
-
-
Gu, M.1
Rice, C.M.2
-
25
-
-
0038607629
-
ATP binding modulates the nucleic acid affinity of hepatitis C virus helicase
-
DOI 10.1074/jbc.M301283200
-
Levin M.K., Gurjar M.M., and Patel S.S. ATP binding modulates the nucleic acid affinity of hepatitis C virus helicase J. Biol. Chem. 278 2003 23311 23316 (Pubitemid 36830145)
-
(2003)
Journal of Biological Chemistry
, vol.278
, Issue.26
, pp. 23311-23316
-
-
Levin, M.K.1
Gurjar, M.M.2
Patel, S.S.3
-
26
-
-
0033642282
-
Coupling of DNA helicase function to DNA strand exchange activity
-
Harmon F.G., and Kowalczykowski S.C. Coupling of DNA helicase function to DNA strand exchange activity Methods Mol. Biol. 152 2000 75 89
-
(2000)
Methods Mol. Biol.
, vol.152
, pp. 75-89
-
-
Harmon, F.G.1
Kowalczykowski, S.C.2
-
27
-
-
77949447376
-
Investigation of translocation, DNA unwinding, and protein displacement by NS3h, the helicase domain from the hepatitis C virus helicase
-
Matlock D.L., Yeruva L., Byrd A.K., Mackintosh S.G., Langston C., and Brown C. Investigation of translocation, DNA unwinding, and protein displacement by NS3h, the helicase domain from the hepatitis C virus helicase Biochemistry 49 2010 2097 2109
-
(2010)
Biochemistry
, vol.49
, pp. 2097-2109
-
-
Matlock, D.L.1
Yeruva, L.2
Byrd, A.K.3
MacKintosh, S.G.4
Langston, C.5
Brown, C.6
-
28
-
-
34147111663
-
DEAD-box-protein-assisted RNA Structure Conversion Towards and Against Thermodynamic Equilibrium Values
-
DOI 10.1016/j.jmb.2007.02.071, PII S002228360700263X
-
Yang Q., Fairman M.E., and Jankowsky E. DEAD-box-protein-assisted RNA structure conversion towards and against thermodynamic equilibrium values J. Mol. Biol. 368 2010 1087 1100 (Pubitemid 46574663)
-
(2007)
Journal of Molecular Biology
, vol.368
, Issue.4
, pp. 1087-1100
-
-
Yang, Q.1
Fairman, M.E.2
Jankowsky, E.3
-
29
-
-
77952992155
-
Single-molecule FRET analysis of helicase functions
-
Rothenberg E., and Ha T. Single-molecule FRET analysis of helicase functions Methods Mol. Biol. 587 2010 29 43
-
(2010)
Methods Mol. Biol.
, vol.587
, pp. 29-43
-
-
Rothenberg, E.1
Ha, T.2
-
30
-
-
1942423138
-
Probing Single-Stranded DNA Conformational Flexibility Using Fluorescence Spectroscopy
-
Murphy M.C., Rasnik I., Cheng W., Lohman T.M., and Ha T. Probing single-stranded DNA conformational flexibility using fluorescence spectroscopy Biophys. J. 86 2004 2530 2537 (Pubitemid 38524439)
-
(2004)
Biophysical Journal
, vol.86
, Issue.4
, pp. 2530-2537
-
-
Murphy, M.C.1
Rasnik, I.2
Cheng, W.3
Lohman, T.M.4
Ha, T.5
-
31
-
-
60549117657
-
BLM helicase measures DNA unwound before switching strands and hRPA promotes unwinding reinitiation
-
Yodh J.G., Stevens B.C., Kanagaraj R., Janscak P., and Ha T. BLM helicase measures DNA unwound before switching strands and hRPA promotes unwinding reinitiation EMBO J. 28 2009 405 416
-
(2009)
EMBO J.
, vol.28
, pp. 405-416
-
-
Yodh, J.G.1
Stevens, B.C.2
Kanagaraj, R.3
Janscak, P.4
Ha, T.5
-
32
-
-
27644514163
-
Repetitive shuttling of a motor protein on DNA
-
DOI 10.1038/nature04049, PII N04049
-
Myong S., Rasnik I., Joo C., Lohman T.M., and Ha T. Repetitive shuttling of a motor protein on DNA Nature 437 2005 1321 1325 (Pubitemid 41568672)
-
(2005)
Nature
, vol.437
, Issue.7063
, pp. 1321-1325
-
-
Myong, S.1
Rasnik, I.2
Joo, C.3
Lohman, T.M.4
Ha, T.5
-
33
-
-
34547595373
-
Spring-loaded mechanism of DNA unwinding by hepatitis C virus NS3 helicase
-
DOI 10.1126/science.1144130
-
Myong S., Bruno M.M., Pyle A.M., and Ha T. Spring-loaded mechanism of DNA unwinding by hepatitis C virus NS3 helicase Science 317 2007 513 516 (Pubitemid 47196115)
-
(2007)
Science
, vol.317
, Issue.5837
, pp. 513-516
-
-
Myong, S.1
Bruno, M.M.2
Pyle, A.M.3
Ha, T.4
-
34
-
-
0032484096
-
Single-molecule enzymatic dynamics
-
Lu H.P., Xun L., and Xie X.S. Single-molecule enzymatic dynamics Science 282 1998 1877 1882 (Pubitemid 28555264)
-
(1998)
Science
, vol.282
, Issue.5395
, pp. 1877-1882
-
-
Xie, X.S.1
-
35
-
-
0033527562
-
The helicase from hepatitis C virus is active as an oligomer
-
Levin M.K., and Patel S.S. The helicase from hepatitis C virus is active as an oligomer J. Biol. Chem. 274 1999 31839 31846
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 31839-31846
-
-
Levin, M.K.1
Patel, S.S.2
-
36
-
-
15444371665
-
Multiple full-length NS3 molecules are required for optimal unwinding of oligonucleotide DNA in vitro
-
DOI 10.1074/jbc.M407971200
-
Tackett A.J., Chen Y., Cameron C.E., and Raney K.D. Multiple full-length NS3 molecules are required for optimal unwinding of oligonucleotide DNA in vitro J. Biol. Chem. 280 2005 10797 10806 (Pubitemid 40395943)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.11
, pp. 10797-10806
-
-
Tackett, A.J.1
Chen, Y.2
Cameron, C.E.3
Raney, K.D.4
-
37
-
-
64149127878
-
NS3 helicase from the hepatitis C virus can function as a monomer or oligomer depending on enzyme and substrate concentrations
-
Jennings T.A., Mackintosh S.G., Harrison M.K., Sikora D., Sikora B., and Bhuvanesh D. NS3 helicase from the hepatitis C virus can function as a monomer or oligomer depending on enzyme and substrate concentrations J. Biol. Chem. 284 2009 4806 4814
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 4806-4814
-
-
Jennings, T.A.1
MacKintosh, S.G.2
Harrison, M.K.3
Sikora, D.4
Sikora, B.5
Bhuvanesh, D.6
-
38
-
-
25444456899
-
Increasing the length of the single-stranded overhang enhances unwinding of duplex DNA by bacteriophage T4 Dda helicase
-
DOI 10.1021/bi050703z
-
Byrd A.K., and Raney K.D. Increasing the length of the single-stranded overhang enhances unwinding of duplex DNA by bacteriophage T4 Dda helicase Biochemistry 44 2005 12990 12997 (Pubitemid 41377279)
-
(2005)
Biochemistry
, vol.44
, Issue.39
, pp. 12990-12997
-
-
Byrd, A.K.1
Raney, K.D.2
-
39
-
-
0030740262
-
Major domain swiveling revealed by the crystal structures of complexes of E. coli Rep helicase bound to single-stranded DNA and ADP
-
DOI 10.1016/S0092-8674(00)80525-5
-
Korolev S., Hsieh J., Gauss G.H., Lohman T.M., and Waksman G. Major domain swiveling revealed by the crystal structures of complexes of E. coli Rep helicase bound to single-stranded DNA and ADP Cell 90 1997 635 647 (Pubitemid 27357956)
-
(1997)
Cell
, vol.90
, Issue.4
, pp. 635-647
-
-
Korolev, S.1
Hsieh, J.2
Gauss, G.H.3
Lohman, T.M.4
Waksman, G.5
-
40
-
-
0033515425
-
Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism
-
Velankar S.S., Soultanas P., Dillingham M.S., Subramanya H.S., and Wigley D.B. Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism Cell 97 1999 75 84 (Pubitemid 29165891)
-
(1999)
Cell
, vol.97
, Issue.1
, pp. 75-84
-
-
Velankar, S.S.1
Soultanas, P.2
Dillingham, M.S.3
Subramanya, H.S.4
Wigley, D.B.5
-
41
-
-
41949094586
-
Structure of the DNA repair helicase hel308 reveals DNA binding and autoinhibitory domains
-
Richards J.D., Johnson K.A., McRobbie A.M., McMahon S., Oke M., and Carter L. Structure of the DNA repair helicase hel308 reveals DNA binding and autoinhibitory domains J. Biol. Chem. 283 2008 5118 5126
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 5118-5126
-
-
Richards, J.D.1
Johnson, K.A.2
McRobbie, A.M.3
McMahon, S.4
Oke, M.5
Carter, L.6
-
42
-
-
33845657428
-
UvrD Helicase Unwinds DNA One Base Pair at a Time by a Two-Part Power Stroke
-
DOI 10.1016/j.cell.2006.10.049, PII S0092867406016011
-
Lee J.Y., and Yang W. UvrD helicase unwinds DNA one base pair at a time by a two-part power stroke Cell 127 2006 1349 1360 (Pubitemid 44960421)
-
(2006)
Cell
, vol.127
, Issue.7
, pp. 1349-1360
-
-
Lee, J.Y.1
Yang, W.2
-
43
-
-
0037119352
-
Helicase from hepatitis C virus, energetics of DNA binding
-
DOI 10.1074/jbc.M112315200
-
Levin M.K., and Patel S.S. Helicase from hepatitis C virus, energetics of DNA binding J. Biol. Chem. 277 2002 29377 29385 (Pubitemid 41079221)
-
(2002)
Journal of Biological Chemistry
, vol.277
, Issue.33
, pp. 29377-29385
-
-
Levin, M.K.1
Patel, S.S.2
-
44
-
-
0031688282
-
Enzymatic transition states and transition state analog design
-
DOI 10.1146/annurev.biochem.67.1.693
-
Schramm V.L. Enzymatic transition states and transition state analog design Annu. Rev. Biochem. 67 1998 693 720 (Pubitemid 28411142)
-
(1998)
Annual Review of Biochemistry
, vol.67
, pp. 693-720
-
-
Schramm, V.L.1
-
45
-
-
56449114709
-
Slide into action: Dynamic shuttling of HIV reverse transcriptase on nucleic acid substrates
-
Liu S., Abbondanzieri E.A., Rausch J.W., Le Grice S.F., and Zhuang X. Slide into action: dynamic shuttling of HIV reverse transcriptase on nucleic acid substrates Science 322 2008 1092 1097
-
(2008)
Science
, vol.322
, pp. 1092-1097
-
-
Liu, S.1
Abbondanzieri, E.A.2
Rausch, J.W.3
Le Grice, S.F.4
Zhuang, X.5
-
46
-
-
43449118968
-
Dynamic binding orientations direct activity of HIV reverse transcriptase
-
DOI 10.1038/nature06941, PII NATURE06941
-
Abbondanzieri E.A., Bokinsky G., Rausch J.W., Zhang J.X., Le Grice S.F., and Zhuang X. Dynamic binding orientations direct activity of HIV reverse transcriptase Nature 453 2008 184 189 (Pubitemid 351667984)
-
(2008)
Nature
, vol.453
, Issue.7192
, pp. 184-189
-
-
Abbondanzieri, E.A.1
Bokinsky, G.2
Rausch, J.W.3
Zhang, J.X.4
Le Grice, S.F.J.5
Zhuang, X.6
-
47
-
-
34648813439
-
Single-molecule structural dynamics of EF-G-ribosome interaction during translocation
-
DOI 10.1021/bi700657d
-
Wang Y., Qin H., Kudaravalli R.D., Kirillov S.V., Dempsey G.T., and Pan D. Single-molecule structural dynamics of EF-G-ribosome interaction during translocation Biochemistry 46 2007 10767 10775 (Pubitemid 47463031)
-
(2007)
Biochemistry
, vol.46
, Issue.38
, pp. 10767-10775
-
-
Wang, Y.1
Qin, H.2
Kudaravalli, R.D.3
Kirillov, S.V.4
Dempsey, G.T.5
Pan, D.6
Cooperman, B.S.7
Goldman, Y.E.8
-
48
-
-
76249127905
-
Conformational transitions in DNA polymerase i revealed by single-molecule FRET
-
Santoso Y., Joyce C.M., Potapova O., Le Reste L., Hohlbein J., and Torella J.P. Conformational transitions in DNA polymerase I revealed by single-molecule FRET Proc. Natl Acad. Sci. USA 107 2010 715 720
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 715-720
-
-
Santoso, Y.1
Joyce, C.M.2
Potapova, O.3
Le Reste, L.4
Hohlbein, J.5
Torella, J.P.6
-
49
-
-
44449134820
-
A practical guide to single-molecule FRET
-
DOI 10.1038/nmeth.1208, PII NMETH.1208
-
Roy R., Hohng S., and Ha T. A practical guide to single-molecule FRET Nat. Methods 5 2008 507 516 (Pubitemid 351761757)
-
(2008)
Nature Methods
, vol.5
, Issue.6
, pp. 507-516
-
-
Roy, R.1
Hohng, S.2
Ha, T.3
|