Diversity of Plasmodium falciparum chloroquine resistance transporter (pfcrt) exon 2 haplotypes in the pacific from 1959 to 1979

PLoS ONE

Volumn 7, Issue 1, 2012, Pages

  Chan, Chim W ^a   Spathis, Rita ^a   Reiff, Dana M ^a   McGrath, Stacy E ^a   Garruto, Ralph M ^a   Lum, J Koji ^a  

^a BINGHAMTON UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CHLOROQUINE; MEMBRANE PROTEIN; PLASMODIUM FALCIPARUM CHLOROQUINE RESISTANCE TRANSPORTER PROTEIN; PROTOZOAL PROTEIN; UNCLASSIFIED DRUG; ANTIMALARIAL AGENT; CARRIER PROTEIN; PFCRT PROTEIN, PLASMODIUM FALCIPARUM;

AMINO ACID SUBSTITUTION; ANTIMALARIAL DRUG RESISTANCE; ARTICLE; CONTROLLED STUDY; DRUG TREATMENT FAILURE; EXON; GENE AMPLIFICATION; GENE MUTATION; GENE SEQUENCE; GENETIC VARIABILITY; GEOGRAPHIC DISTRIBUTION; HAPLOTYPE; HUMAN; INFECTION RATE; MALARIA FALCIPARUM; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PAPUA NEW GUINEA; PARASITE PREVALENCE; PARASITE TRANSMISSION; PLASMODIUM FALCIPARUM; POPULATION RESEARCH; UNINDEXED SEQUENCE; UNITED KINGDOM; AMINO ACID SEQUENCE; ANIMAL; CLASSIFICATION; DNA SEQUENCE; DRUG RESISTANCE; GENE FLOW; GENETICS; GEOGRAPHY; GROWTH, DEVELOPMENT AND AGING; MOLECULAR GENETICS; MUTATION; PACIFIC ISLANDS; PARASITOLOGY; PHYLOGENY; POLYMERASE CHAIN REACTION; PREVALENCE; SEQUENCE HOMOLOGY;

PLASMODIUM FALCIPARUM;

AMINO ACID SEQUENCE; ANIMALS; ANTIMALARIALS; CHLOROQUINE; DRUG RESISTANCE; EXONS; GENE FLOW; GENETIC VARIATION; GEOGRAPHY; HAPLOTYPES; HUMANS; MALARIA, FALCIPARUM; MEMBRANE TRANSPORT PROTEINS; MOLECULAR SEQUENCE DATA; MUTATION; PACIFIC ISLANDS; PAPUA NEW GUINEA; PHYLOGENY; PLASMODIUM FALCIPARUM; POLYMERASE CHAIN REACTION; PREVALENCE; PROTOZOAN PROTEINS; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID;

EID: 84855853686     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0030213     Document Type: Article

References (59)

1. World Health Organization (2009) World malaria report 2009 Geneva WHO Press.
2. Trape JF, (2001) The public health impact of chloroquine resistance in Africa. Am J Trop Med Hyg 64 (1-2) Suppl: 12-7.
3. Wongsrichanalai C, Pickard AL, Wernsdorfer WH, Meshnick SR, (2002) Epidemiology of drug-resistant malaria. Lancet Infect Dis 2: 209-218.
4. Noedl H, Se Y, Schaecher K, Smith BL, Socheat D, et al. (2008) Evidence of artemisinin-resistant malaria in western Cambodia. N Engl J Med 359: 2619-2620.
5. Fidock DA, Nomura T, Talley AK, Cooper RA, Dzekunov SM, et al. (2000) Mutations in the P. falciparum digestive vacuole transmembrane protein PfCRT and evidence for their role in chloroquine resistance. Mol Cell 6: 861-871.
6. Wootton JC, Feng X, Ferdig MT, Cooper RA, Mu J, et al. (2002) Genetic diversity and chloroquine selective sweeps in Plasmodium falciparum. Nature 418: 320-323.
7. Mita T, Kaneko A, Hombhanje F, Hwaihwanje I, Takahashi N, et al. (2006) Role of pfmdr1 mutations on chloroquine resistance in Plasmodium falciparum isolates with pfcrt K76T from Papua New Guinea. Acta Trop 98: 137-144.
8. Yung AP, Bennett NM, (1976) Chloroquine-resistant falciparum malaria acquired in Papua New Guinea. Med J Aust 2: 845.
9. Mehlotra RK, Fujioka H, Roepe PD, Janneh O, Ursos LM, et al. (2001) Evolution of a unique Plasmodium falciparum chloroquine-resistance phenotype in association with pfcrt polymorphism in Papua New Guinea and South America. Proc Natl Acad Sci USA 98: 12689-12694.
10. Anderson TJ, Haubold B, Williams JT, Estrada-Franco JG, Richardson L, et al. (2000) Microsatellite markers reveal a spectrum of population structures in the malaria parasite Plasmodium falciparum. Mol Biol Evol 17: 1467-1482.
11. Nagesha HS, Casey GJ, Rieckmann KH, Fryauff DJ, Laksana BS, et al. (2003) New haplotypes of the Plasmodium falciparum chloroquine resistance transporter (pfcrt) gene among chloroquine-resistant parasite isolates. Am J Trop Med Hyg 68: 398-402.
12. Hastings IM, Watkins WM, (2005) Intensity of malaria transmission and the evolution of drug resistance. Acta Trop 94: 218-229.
13. Mehlotra RK, Mattera G, Bhatia K, Reeder JC, Stoneking M, et al. (2005) Insight into the early spread of chloroquine-resistant Plasmodium falciparum infections in Papua New Guinea. J Infect Dis 192: 2174-2179.
14. Chan CW, Lynch D, Spathis R, Hombhanje FW, Kaneko A, et al. (2006) Flashback to the 1960s: utility of archived sera to explore the origin and evolution of Plasmodium falciparum chloroquine resistance in the Pacific. Acta Trop 99: 15-22.
15. Müller I, Bockarie M, Alpers M, Smith T, (2003) The epidemiology of malaria in Papua New Guinea. Trends Parasitol 19: 253-259.
16. Kaneko A, Taleo G, Kalkoa M, Yaviong J, Reeve PA, et al. (1998) Malaria epidemiology, glucose 6-phosphate dehydrogenase deficiency and human settlement in the Vanuatu Archipelago. Acta Trop 70: 285-302.
17. Kaneko A, Taleo G, Kalkoa M, Yamar S, Kobayakawa T, et al. (2000) Malaria eradication on islands. Lancet 356: 1560-1564.
18. Mueller I, Bjorge S, Poigeno G, Kundi J, Tandrapah T, et al. (2003) The epidemiology of malaria in the Papua New Guinea highlands: 2. Eastern Highlands Province. P N G Med J 3-4: 166-179.
19. Mueller I, Namuigi P, Kundi J, Ivivi R, Tandrapah T, et al. (2005) Epidemic malaria in the highlands of Papua New Guinea. Am J Trop Med Hyg 72: 554-560.
20. Spencer M, (1992) The history of malaria control in the southwest Pacific region, with particular reference to Papua New Guinea and the Solomon Islands. P N G Med J 35: 33-66.
21. Metselaar D, (1961) Seven years' malaria research and residual house spraying in Netherlands New Guinea. Am J Trop Med Hyg 10: 327-334.
22. Peters W, (1962) A critical survey of the results of malaria-eradication and control programmes in the Southwest Pacific. Ann Trop Med Parasitol 56: 20-32.
23. Smithurst BA, (1970) A malaria survey on Bougainville Island (Kieta Subdistrict) January-February 1967. Southeast Asian J Trop Med Public Health 1: 117-122.
24. Radford AJ, Van Leeuwen H, Christian SH, (1976) Social aspects in the changing epidemiology of malaria in the highlands of New Guinea. Ann Trop Med Parasitol 70: 11-23.
25. Clyde DF, McCarthy VC, Miller RM, Hornick RB, (1976) Chloroquine-resistant falciparum malaria from Irian Jaya (Indonesian New Guinea). J Trop Med Hyg 79: 38-41.
26. Durand R, Jafari S, Vauzelle J, Delabre JF, Jesic Z, et al. (2001) Analysis of pfcrt point mutations and chloroquine susceptibility in isolates of Plasmodium falciparum. Mol Biochem Parasitol 114: 95-102.
27. Lim P, Chy S, Ariey F, Incardona S, Chim P, et al. (2003) pfcrt polymorphism and chloroquine resistance in Plasmodium falciparum strains isolated in Cambodia. Antimicrob Agents Chemother 47: 87-94.
28. Saito-Nakano Y, Tanabe K, Kamei K, Iwagami M, Komaki-Yasuda K, et al. (2008) Genetic evidence for Plasmodium falciparum resistance to chloroquine and pyrimethamine in Indochina and the Western Pacific between 1984 and 1998. Am J Trop Med Hyg 79: 613-619.
29. Bowden DK, Bastien P, Douglas FP, Muir JW, Tambisari E, (1982) Chloroquine-reistant Plasmodium falciparum malaria in Vanuatu. Med J Aust 2: 561-562.
30. Parkinson AD, Bowden DK, (1980) Chloroquine resistance in the south-west Pacific. Med J Aust 2: 637-638.
31. Cooper RA, Ferdig MT, Su XZ, Ursos LM, Mu J, et al. (2002) Alternative mutations at position 76 of the vacuolar transmembrane protein PfCRT are associated with chloroquine resistance and unique stereospecific quinine and quinidine responses in Plasmodium falciparum. Mol Pharmacol 61: 35-42.
32. Huaman MC, Yoshinaga K, Suryanatha A, Suarsana N, Kanbara H, (2004) Short report: polymorphisms in the chloroquine resistance transporter gene in Plasmodium falcipaum isolates from Lombok, Indonesia. Am J Trop Med Hyg 71: 40-42.
33. Dulay IS, Gibson FD, Eyeson-Annan MB, Narara A, (1987) Chloroquine resistance in Plasmodium falciparum and its geographical distribution in Papua New Guinea. P N G Med J 30: 281-290.
34. Mita T, Kaneko A, Hombhanje F, Hwaihwanje I, Takahashi N, et al. (2006) Role of pfmdr1 mutations on chloroquine resistance in Plasmodium falciparum isolates with pfcrt K76T from Papua New Guinea. Acta Trop 98: 137-144.
35. Sweeney AW, (2000) Wartime research on malaria chemotherapy. Parassitologia 42: 33-45.
36. Joy RJ, (1999) Malaria in American troops in the South and Southwest Pacific in World War II. Med Hist 43: 192-207.
37. Sweeney AW, (1996) The possibiligy of an "X" factor. The first documented drug resistance of human malaria. Int J Parasitol 26: 1035-1061.
38. Warhurst DC, (1981) The quinine-haemin interaction and its relationship to antimalarial activity. Biochem Pharmacol 30: 3323-7.
39. Simon F, Le Bras J, Charmot G, Girard PM, Faucher C, et al. (1986) Severe chloroquine-resistant falciparum malaria in Gabon with decreased sensitivity to quinine. Trans R Soc Trop Med Hyg 80: 996-997.
40. Warsame M, Wernsdorfer WH, Payne D, Björkman A, (1991) Susceptibility of Plasmodium falciparum in vitro to chloroquine, mefloquine, quinine and sulfadoxine/pyrimethamine in Somalia: relationships between the responses to the different drugs. Trans R Soc Tom Med Hyg 85: 565-569.
41. Okombo J, Ohuma E, Picot S, Nzila A, (2011) Update on genetic markers of quinine resistance in Plasmodium falciparum. Mol Biochem Parasitol 177: 77-82.
42. Peters W, (1984) History and current status of drug resistance. In: Peters W, Richards WHG, editors. Antimalarial Durgs: Biological Background, Experimental Methods, and Drug Resistance Berlin Springer-Verlag pp. 423-445.
43. Brown P, Collins WE, Gajdusek DC, Miller LH, (1976) An evaluation of malaria fluorescent antibody patterns in several remote island populations of the New Hebrides, Solomons, Western Carolines, and New Guinea. Am J Trop Med Hyg 25: 775-783.
44. Lum JK, Kaneko A, Tanabe K, Takahashi N, Björkman A, et al. (2004) Malaria dispersal among islands: human mediated Plasmodium falciparum gene flow in Vanuatu, Melanesia. Acta Trop 90: 181-185.
45. Lum JK, Kaneko A, Taleo G, Amos M, Reiff DM, (2007) Genetic diversity and gene flow of humans, Plasmodium falciparum, and Anopheles farauti s.s. of Vanuatu; inferred malaria dispersal and implications for malaria control. Acta Trop 103: 102-107.
46. Mita T, Kaneko A, Lum JK, Zungu IL, Tsukahara T, et al. (2004) Expansion of wild type allele rather than back mutation in pfcrt explains the recent recovery of chloroquine sensitivity of Plasmodium falciparum in Malawi. Mol Biochem Parasitol 135: 159-163.
47. Langhorne J, Ndungu FM, Sponaas AM, Marsh K, (2008) Immunity to malaria: more questions than answers. Nat Immunol 9: 725-732.
48. Allen SJ, O'Donnell A, Alexander ND, Mgone CS, Peto TE, et al. (1999) Prevention of cerebral malaria in children in Papua New Guinea by Southeast Asian ovalocytosis band 3. Am J Trop Med Hyg 60: 1056-1060.
49. Genton B, al-Yaman F, Mgone CS, Alexander N, Paniu MM, et al. (1995) Ovalocytosis and cerebral malaria. Nature 378: 564-565.
50. Mgone CS, Koki G, Paniu MM, Kono J, Bhatia KK, et al. (1996) Occurrence of the erythrocyte band 3 (AE1) gene deletion in relation to malaria endemicity in Papua New Guinea. Trans R Soc Trop Med Hyg 90: 228-231.
51. Flint J, Hill AV, Bowden DK, Oppenheimer SJ, Sill PR, et al. (1986) High frequencies of alpha-thalassaemia are the result of natural selection by malaria. Nature 321: 744-750.
52. Hill AVS, Bowden DK, O'Shaughnessy DF, Weatherall DJ, Clegg JB, (1988) Beta thalassemia in Melanesia: association with malaria and characterization of a common variant (IVS-1 nt 5 G-C). Blood 72: 9-14.
53. Serjeantson SW, (1989) A selective advantage for the Gerbich-negative phenotype in malarious areas of Papua New Guinea. PNG Med J 32: 5-9.
54. Ariey F, Fandeur T, Durand R, Randrianarivelojosia M, Jambou R, et al. (2006) Invasion of Africa by a single pfcrt allele of South East Asian type. Malar J 5: 34.
55. Djimdé A, Doumbo OK, Cortese JF, Kayentao K, Doumbo S, et al. (2001) A molecular marker for chloroquine-resistant falciparum malaria. N Engl J Med 344: 257-263.
56. Network 4.516. Available atwww.fluxus-engineering.com.
57. Nei M, (1987) Molecular Evolutionary Genetics New York Columbia University Press.
58. Bandelt HJ, Forster P, Röhl A, (1999) Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16: 37-48.
59. Excoffier L, Laval G, Schneider S, (2005) Arlequin (version 3.0): An integrated software package for population genetics data analysis. Evol Bioinform Online 1: 47-50.