Pattern recognition approaches and computational systems tools for ultra performance liquid chromatography-mass spectrometry-based comprehensive metabolomic profiling and pathways analysis of biological data sets

Analytical Chemistry

Volumn 84, Issue 1, 2012, Pages 428-439

  Wang, Xijun ^a   Yang, Bo ^a   Sun, Hui ^a   Zhang, Aihua ^a  

^a HEILONGJIANG UNIVERSITY OF CHINESE MEDICINE   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ARACHIDONIC ACIDS; BIO-SYSTEMS; BIOLOGICAL DATA; COMPUTATIONAL SYSTEM; DRUG ACTION; DRUG DISCOVERY; METABOLOMICS; MULTIPLE PATHWAYS; NETWORK CONSTRUCTION; PATTERN RECOGNITION METHOD; RESEARCH PRODUCTIVITY; THERAPEUTIC EFFECTS; THERAPEUTIC TARGETS;

AMINO ACIDS; BIOCHEMISTRY; COMPUTATIONAL COMPLEXITY; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; METABOLISM; METABOLITES; PHYSIOLOGY; SYSTEMS ANALYSIS;

PATTERN RECOGNITION SYSTEMS;

BIOLOGICAL MARKER;

ANIMAL; ARTICLE; DROSOPHILA MELANOGASTER; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; METABOLOMICS; METHODOLOGY; PRINCIPAL COMPONENT ANALYSIS;

ANIMALS; BIOLOGICAL MARKERS; CHROMATOGRAPHY, LIQUID; DROSOPHILA MELANOGASTER; MASS SPECTROMETRY; METABOLOMICS; PRINCIPAL COMPONENT ANALYSIS;

EID: 84855392494     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac202828r     Document Type: Article

References (35)

1. Nicholson, J. K.; Wilson, I. D. Nat. Rev. 2003, 2, 668-676 [PubMed: 12904817]
2. Holmes, E.; Loo, R. L.; Stamler, J.; Bictash, M.; Yap, I. K.; Chan, Q.; Ebbels, T.; De Iorio, M.; Brown, I. J.; Veselkov, K. A.; Daviglus, M. L.; Kesteloot, H.; Ueshima, H.; Zhao, L.; Nicholson, J. K.; Elliott, P. Nature 2008, 453, 396-401 [PubMed: 18425110]
3. Wang, X.; Sun, H.; Zhang, A.; Sun, W.; Wang, P.; Wang, Z. J. Pharm. Biomed. Anal. 2011, 55, 859-868 [PubMed: 21353755]
4. Zhang, A.; Sun, H.; Wang, Z.; Sun, W.; Wang, P.; Wang, X. Planta Med. 2010, 76 (17) 2026-2035 [PubMed: 21058239]
5. Chan, E. C.; Pasikanti, K. K.; Nicholson, J. K. Nat Protoc. 2011, 6, 1483-1499 [PubMed: 21959233]
6. Yang, B.; Zhang, A.; Sun, H.; Dong, W.; Yan, G.; Li, T.; Wang, X. J. Pharm Biomed Anal. 2012, 58, 113-124 [PubMed: 22019702]
7. Arakaki, A. K.; Skolnick, J.; McDonald, J. F. Nature 2008, 456, 443 [PubMed: 19037294]
8. Mahowald, M. W.; Schenck, C. H. Nature 2005, 437, 1279-1285 [PubMed: 16251953]
9. Pigeon, W. R. Indian J. Med. Res. 2010, 131, 321-332 [PubMed: 20308757]
10. Richey, S. M.; Krystal, A. D. Curr. Pharm. Des. 2011, 17, 1471-1475 [PubMed: 21476952]
11. Sarris, J.; Byrne, G. J. Sleep Med. Rev. 2011, 15, 99-106 [PubMed: 20965131]
12. Chen, C. Y.; Chen, Y. F.; Tsai, H.Y. J. Biomol. Struct. Dyn. 2008, 26, 57-64 [PubMed: 18533726]
13. Zhang, Z. J. Prescription of Jinkuiyaolue. People's Medical Publishing House: Beijing, 2002.
14. Chen, C. Y.; Chen, Y. F.; Tsai, H. Y. J. Biomol Struct. Dyn. 2008, 26, 57-64 [PubMed: 18533726]
15. Zhang, S. J.; Chen, Z. X.; Lin, Y. W.; Cheng, Y. H.; Liu, S. L.; Wang, C. J. Zhong Yao Cai 2007, 27, 303-305 [PubMed: 17526166]
16. Li, Y. J.; Bi, K. S. Chem. Pharm. Bull. (Tokyo) 2006, 54, 847-851 [PubMed: 16755056]
17. Fang, X. S.; Hao, J. F.; Zhou, H. Y.; Zhu, L. X.; Wang, J. H.; Song, F. Q. Phytomedicine 2010, 17, 75-80 [PubMed: 19682877]
18. Yi, P. L.; Tsai, C. H.; Chen, Y. C.; Chang, F. C. J. Biomed Sci. 2007, 14, 285-297 [PubMed:17151826]
19. Zhao, J., Li, S. P., Yang, F. Q., Li, P., and Wang, Y. T. J. Chromatogr., A 2006, 1108 (2) 188-194 [PubMed:16458908]
20. Masson, P.; Alves, A. C.; Ebbels, T. M.; Nicholson, J. K.; Want, E. J. Anal. Chem. 2010, 82, 7779-7786 [PubMed: 20715759]
21. Sands, C. J.; Coen, M.; Ebbels, T. M.; Holmes, E.; Lindon, J. C.; Nicholson, J. K. Anal. Chem. 2011, 83, 2075-2082 [PubMed: 21323345]
22. Spagou, K.; Wilson, I. D.; Masson, P.; Theodoridis, G.; Raikos, N.; Coen, M.; Holmes, E.; Lindon, J. C.; Plumb, R. S.; Nicholson, J. K.; Want, E. J. Anal. Chem. 2011, 83, 382-390 [PubMed: 21142126]
23. Spagou, K; Wilson, I. D.; Masson, P; Theodoridis, G; Raikos, N; Coen, M; Holmes, E; Lindon, J. C.; Plumb, R. S.; Nicholson, J. K.; Want, E. J. Anal. Chem. 2011, 83, 382-390 [PubMed: 21142126]
24. Yanes, O.; Tautenhahn, R.; Patti, G. J.; Siuzdak, G. Anal. Chem. 2011, 83, 2152-2161 [PubMed: 21329365]
25. Sekiyama, Y.; Chikayama, E.; Kikuchi, J. Anal. Chem. 2011, 83, 719-726 [PubMed: 21208007]
26. Chylla, R. A.; Hu, K.; Ellinger, J. J.; Markley, J. L. Anal. Chem. 2011, 83, 4871-4880 [PubMed: 21526800]
27. Duffy, J. F.; Cain, S. W.; Chang, A. M.; Phillips, A. J.; Münch, M. Y.; Gronfier, C; Wyatt, J. K.; Dijk, D. J.; Wright, K. P., Jr.; Czeisler, C. A. Proc. Natl. Acad. Sci. U. S. A. 2011, 108, 15602-15608 [PubMed:21536890]
28. Carr, P. W.; Stoll, D. R.; Wang, X. Anal. Chem. 2011, 83, 1890-900 [PubMed: 21341777]
29. Denery, J. R.; Nunes, A. A.; Dickerson, T. J. Anal. Chem. 2011, 83, 1040-1047 [PubMed:21175165]
30. Lee, P. T.; Lin, H. W.; Chang, Y. H.; Fu, T. F.; Dubnau, J.; Hirsh, J.; Lee, T.; Chiang, A. S. Proc. Natl. Acad. Sci. U. S. A. 2011, 108, 13794-13799 [PubMed: 21808003]
31. Zhang, Z.; Alfonta, L.; Tian, F.; Bursulaya, B.; Uryu, S.; King, D. S.; Schultz, P. G. Proc. Natl. Acad. Sci. U. S. A. 2004, 101, 8882-8887 [PubMed: 15187228]
32. Shimomura, K.; Lowrey, P. L.; Vitaterna, M. H.; Buhr, E. D.; Kumar, V.; Hanna, P.; Omura, C.; Izumo, M.; Low, S. S.; Barrett, R. K.; LaRue, S. I.; Green, C. B.; Takahashi, J. S. Proc. Natl. Acad. Sci. U. S. A. 2010, 107, 8399-8403 [PubMed: 20404168]
33. Boughton, B. A.; Callahan, D. L.; Silva, C.; Bowne, J.; Nahid, A.; Rupasinghe, T.; Tull, D. L.; McConville, M. J.; Bacic, A.; Roessner, U. Anal. Chem. 2011, 83, 7523-30 [PubMed:21879760]
34. Yuliana, N. D.; Khatib, A.; Verpoorte, R.; Choi, Y. H. Anal. Chem. 2011, 83, 6902-6 [PubMed: ]21800886]
35. Nicholson, J. K.; Lindon, J. C. Nature 2008, 455, 1054-1056 [PubMed: 18948945]