-
1
-
-
0033555859
-
Emergent properties of networks of biological signaling pathways
-
Bhalla U, Iyengar R, (1999) Emergent properties of networks of biological signaling pathways. Science 283: 381-387.
-
(1999)
Science
, vol.283
, pp. 381-387
-
-
Bhalla, U.1
Iyengar, R.2
-
2
-
-
0033806431
-
Evidence for a distinct light-induced calcium-dependent potassium current in hermissenda crassicornis
-
Blackwell K, (2000) Evidence for a distinct light-induced calcium-dependent potassium current in hermissenda crassicornis. Journal of Computational Neuroscience 9: 149-170.
-
(2000)
Journal of Computational Neuroscience
, vol.9
, pp. 149-170
-
-
Blackwell, K.1
-
3
-
-
0028013351
-
An active membrane model of the cerebellar Purkinje cell I. Simulation of current clamps in slice
-
De Schutter E, Bower J, (1994) An active membrane model of the cerebellar Purkinje cell I. Simulation of current clamps in slice. Journal of Neurophysiology 71: 375-400.
-
(1994)
Journal of Neurophysiology
, vol.71
, pp. 375-400
-
-
de Schutter, E.1
Bower, J.2
-
4
-
-
0028158783
-
An active membrane model of the cerebellar Purkinje cell II. Simulation of synaptic responses
-
De Schutter E, Bower JM, (1994) An active membrane model of the cerebellar Purkinje cell II. Simulation of synaptic responses. Journal of Neurophysiology 71: 401-419.
-
(1994)
Journal of Neurophysiology
, vol.71
, pp. 401-419
-
-
de Schutter, E.1
Bower, J.M.2
-
5
-
-
50549104705
-
Channel density distributions explain spiking variability in the globus pallidus: A combined physiology and computer simulation database approach
-
Günay C, Edgerton JR, Jaeger D, (2008) Channel density distributions explain spiking variability in the globus pallidus: A combined physiology and computer simulation database approach. J Neurosci 28: 7476-7491.
-
(2008)
J Neurosci
, vol.28
, pp. 7476-7491
-
-
Günay, C.1
Edgerton, J.R.2
Jaeger, D.3
-
6
-
-
84855393704
-
A federated design for a neurobiological simulation engine: The CBI framework for GENESIS 3.0
-
Cornelis H, Edwards M, Coop A, Bower J, (2011) A federated design for a neurobiological simulation engine: The CBI framework for GENESIS 3.0. PLoS Computational Biology 7: 0028956.
-
(2011)
PLoS Computational Biology
, vol.7
, pp. 0028956
-
-
Cornelis, H.1
Edwards, M.2
Coop, A.3
Bower, J.4
-
7
-
-
0003750003
-
The Book of GENESIS: Exploring Realistic Neural Models with the GEneral NEural SImulation System
-
Springer-Verlag, New York, second edition
-
Bower JM, Beeman D, eds. (1998) The Book of GENESIS: Exploring Realistic Neural Models with the GEneral NEural SImulation System. Springer-Verlag, New York, second edition.
-
(1998)
-
-
Bower, J.M.1
Beeman, D.2
-
8
-
-
84856089489
-
-
Sebastopol, CA, O'Reilly Media, 3rd edition
-
Wall L, Christiansen T, Orwant J, (2000) Perl Programmers Reference Guide Sebastopol, CA O'Reilly Media, 3rd edition.
-
(2000)
Perl Programmers Reference Guide
-
-
Wall, L.1
Christiansen, T.2
Orwant, J.3
-
12
-
-
0032028340
-
Scripting: Higher level programming for the 21st century
-
Ousterhout JK, (1998) Scripting: Higher level programming for the 21st century. IEEE Computer 31: 23-30.
-
(1998)
IEEE Computer
, vol.31
, pp. 23-30
-
-
Ousterhout, J.K.1
-
13
-
-
0037706913
-
Neurospaces: Separating modeling and simulation
-
Cornelis H, De Schutter E, (2003) Neurospaces: Separating modeling and simulation. Neurocomputing 52-54: 227-231.
-
(2003)
Neurocomputing
, vol.52-54
, pp. 227-231
-
-
Cornelis, H.1
de Schutter, E.2
-
14
-
-
2542436153
-
Neurospaces parameter handling
-
Cornelis H, De Schutter E, (2004) Neurospaces parameter handling. Neurocomputing 58-60: 1079-1084.
-
(2004)
Neurocomputing
, vol.58-60
, pp. 1079-1084
-
-
Cornelis, H.1
de Schutter, E.2
-
15
-
-
84887302917
-
PyNN: A common interface for neuronal network simulators
-
Davison A, Brüderle D, Eppler J, Kremkow J, Muller E, et al. (2008) PyNN: A common interface for neuronal network simulators. Frontiers in Neuroinformatics 2: 11.
-
(2008)
Frontiers in Neuroinformatics
, vol.2
, pp. 11
-
-
Davison, A.1
Brüderle, D.2
Eppler, J.3
Kremkow, J.4
Muller, E.5
-
16
-
-
17144363197
-
Reconstruct: a free editor for serial section microscopy
-
Fiala J, (2005) Reconstruct: a free editor for serial section microscopy. Journal of Microscopy 218: 52-61.
-
(2005)
Journal of Microscopy
, vol.218
, pp. 52-61
-
-
Fiala, J.1
-
17
-
-
67449168306
-
3D electron microscopic reconstruction of segments of rat cerebellar purkinje cell dendrites receiving ascending and parallel fiber granule cell synaptic inputs
-
Huo L, Esquivel AV, Bower JM, (2009) 3D electron microscopic reconstruction of segments of rat cerebellar purkinje cell dendrites receiving ascending and parallel fiber granule cell synaptic inputs. The Journal of Comparative Neurology 514: 583-94.
-
(2009)
The Journal of Comparative Neurology
, vol.514
, pp. 583-594
-
-
Huo, L.1
Esquivel, A.V.2
Bower, J.M.3
-
18
-
-
84856107991
-
Modeling a single dendritic compartment using Neurospaces and GENESIS-3
-
Cornelis H, Lu H, Esquivel A, Bower J, (2007) Modeling a single dendritic compartment using Neurospaces and GENESIS-3. BMC Neuroscience 8: P3.
-
(2007)
BMC Neuroscience
, vol.8
-
-
Cornelis, H.1
Lu, H.2
Esquivel, A.3
Bower, J.4
-
19
-
-
77955483472
-
NeuroML: A language for describing data driven models of neurons and networks with a high degree of biological detail
-
Gleeson P, Crook S, Cannon R, Hines M, Billings G, et al. (2010) NeuroML: A language for describing data driven models of neurons and networks with a high degree of biological detail. PLoS Computational Biology 6: e1000815.
-
(2010)
PLoS Computational Biology
, vol.6
-
-
Gleeson, P.1
Crook, S.2
Cannon, R.3
Hines, M.4
Billings, G.5
-
20
-
-
34147114284
-
neuroConstruct: A tool for modeling networks of neurons in 3D space
-
Gleeson P, Steuber V, Silver R, (2007) neuroConstruct: A tool for modeling networks of neurons in 3D space. Neuron 54: 219-235.
-
(2007)
Neuron
, vol.54
, pp. 219-235
-
-
Gleeson, P.1
Steuber, V.2
Silver, R.3
-
21
-
-
34147178884
-
MorphML: Level 1 of the NeuroML standards for neuronal morphology data and model specification
-
Crook S, Gleeson P, Howell F, Svitak J, Silver A, (2007) MorphML: Level 1 of the NeuroML standards for neuronal morphology data and model specification. Neuroinformatics 5: 96-104.
-
(2007)
Neuroinformatics
, vol.5
, pp. 96-104
-
-
Crook, S.1
Gleeson, P.2
Howell, F.3
Svitak, J.4
Silver, A.5
-
22
-
-
0003110991
-
NEURON-A program for simulation of nerve equations
-
In: Eeckman F, editors, Norwell, MA, Kluwer
-
Hines M, (1993) NEURON-A program for simulation of nerve equations. In: Eeckman F, editors. Neural Systems: Analysis and Modeling Norwell, MA Kluwer pp. 127-136.
-
(1993)
Neural Systems: Analysis and Modeling
, pp. 127-136
-
-
Hines, M.1
-
23
-
-
20844461030
-
NEST: An environment for neural systems simulations
-
In: Plesser T, Volker M, editors, Forschung und wisschenschaftliches Rechnen, Beiträge zum Heinz-Billing-Preis 2001, Göttingen: Gesellschaft für wissenschaftliche Datenverarbeitung, volume 58 of GWDG-Bericht
-
Diesmann M, Gewaltig M, (2002) NEST: An environment for neural systems simulations. In: Plesser T, Volker M, editors. pp. 43-70 Forschung und wisschenschaftliches Rechnen, Beiträge zum Heinz-Billing-Preis 2001, Göttingen: Gesellschaft für wissenschaftliche Datenverarbeitung, volume 58 of GWDG-Bericht.
-
(2002)
, pp. 43-70
-
-
Diesmann, M.1
Gewaltig, M.2
-
25
-
-
77953106373
-
Run-time interoperability between neuronal network simulators based on the music framework
-
Djurfeldt M, Hjorth J, Eppler JM, Dudani N, Helias M, et al. (2010) Run-time interoperability between neuronal network simulators based on the music framework. Neuroinformatics 8: 43-60.
-
(2010)
Neuroinformatics
, vol.8
, pp. 43-60
-
-
Djurfeldt, M.1
Hjorth, J.2
Eppler, J.M.3
Dudani, N.4
Helias, M.5
-
26
-
-
33645278642
-
Mobilizing the base of neuroscience data: the case of neuronal morphologies
-
Ascoli G, (2006) Mobilizing the base of neuroscience data: the case of neuronal morphologies. Nature Rev Neurosci 7: 318-324.
-
(2006)
Nature Rev Neurosci
, vol.7
, pp. 318-324
-
-
Ascoli, G.1
-
27
-
-
41049099540
-
Effects of imperfect dynamic clamp: Computational and experimental results
-
Bettencourt J, Lillis K, Stupin L, White J, (2008) Effects of imperfect dynamic clamp: Computational and experimental results. Journal of Neuroscience Methods 169: 282-289.
-
(2008)
Journal of Neuroscience Methods
, vol.169
, pp. 282-289
-
-
Bettencourt, J.1
Lillis, K.2
Stupin, L.3
White, J.4
-
28
-
-
0034747388
-
Real-time linux dynamic clamp: A fast and flexible way to construct virtual ion channels in living cells
-
Dorval A, Christini D, White T, (2001) Real-time linux dynamic clamp: A fast and flexible way to construct virtual ion channels in living cells. Annals of Biomededical Engineering 29: 897-907.
-
(2001)
Annals of Biomededical Engineering
, vol.29
, pp. 897-907
-
-
Dorval, A.1
Christini, D.2
White, T.3
-
29
-
-
84856087206
-
Realtime tuning and verification of compartmental cell models using RTXI and GENESIS
-
Cornelis H, Coop A, (2010) Realtime tuning and verification of compartmental cell models using RTXI and GENESIS. BMC Neuroscience 11 (Suppl 1): P68.
-
(2010)
BMC Neuroscience
, vol.11
, Issue.SUPPL. 1
-
-
Cornelis, H.1
Coop, A.2
-
31
-
-
77954383001
-
PCSIM: A parallel simulation environment for neural circuits fully integrated with python
-
DOI:10.3389/neuro.11.011.2009
-
Pecevski D, Natschläger T, Schuch K, (2009) PCSIM: A parallel simulation environment for neural circuits fully integrated with python. DOI:10.3389/neuro.11.011.2009.
-
(2009)
-
-
Pecevski, D.1
Natschläger, T.2
Schuch, K.3
-
32
-
-
77950545445
-
STEPS: Modeling and simulating complex reaction-diffusion systems with python
-
Wils S, Schutter ED, (2009) STEPS: Modeling and simulating complex reaction-diffusion systems with python. Frontiers in Neuroinformatics 3.
-
(2009)
Frontiers in Neuroinformatics
, vol.3
-
-
Wils, S.1
Schutter, E.D.2
-
33
-
-
84890861283
-
PyNEST: A convenient interface to the nest simulator
-
Eppler JM, Helias M, Muller E, Diesmann M, Gewaltig MO, (2008) PyNEST: A convenient interface to the nest simulator. Frontiers in neuroinformatics 2.
-
(2008)
Frontiers in Neuroinformatics
, vol.2
-
-
Eppler, J.M.1
Helias, M.2
Muller, E.3
Diesmann, M.4
Gewaltig, M.O.5
-
35
-
-
0035968419
-
Towards NeuroML: Model description methods for collaborative modelling in neuroscience
-
Goddard NH, Hucka M, Howell F, Cornelis H, Shankar K, et al. (2001) Towards NeuroML: Model description methods for collaborative modelling in neuroscience. Philosophical Transactions of the Royal Society, Series B: Biological Sciences 356: 1-20.
-
(2001)
Philosophical Transactions of the Royal Society, Series B: Biological Sciences
, vol.356
, pp. 1-20
-
-
Goddard, N.H.1
Hucka, M.2
Howell, F.3
Cornelis, H.4
Shankar, K.5
-
36
-
-
84951025314
-
The NineML user layer
-
the INCF Multiscale Modeling Taskforce
-
Gortechnikov A, the INCF Multiscale Modeling Taskforce (2010) The NineML user layer. BMC Neuroscience 11 (Suppl 1): P71.
-
(2010)
BMC Neuroscience
, vol.11
, Issue.SUPPL. 1
-
-
Gortechnikov, A.1
-
37
-
-
0003975626
-
The Cathedral and the Bazaar
-
O'Reilly Media
-
Raymond ES, (2001) The Cathedral and the Bazaar. O'Reilly Media.
-
(2001)
-
-
Raymond, E.S.1
-
38
-
-
0003407933
-
The mythical man-month
-
In: Brooks F, editors
-
Brooks F, (1995) The mythical man-month. In: Brooks F, editors. The Mythical Man-Month: Essays on Software Engineering, Anniversary Edition, Addison-Wesley Professional, chapter 2. 2 edition pp. 5-14.
-
(1995)
The Mythical Man-Month: Essays on Software Engineering, Anniversary Edition, Addison-Wesley Professional, Chapter 2. 2 Edition
, pp. 5-14
-
-
Brooks, F.1
-
39
-
-
77953478463
-
A component-based extension framework for large-scale parallel simulations in NEURON
-
King JG, Hines M, Hill SL, Goodman PH, Markram H, et al. (2009) A component-based extension framework for large-scale parallel simulations in NEURON. Frontiers in Neuroinformatics.
-
(2009)
Frontiers in Neuroinformatics
-
-
King, J.G.1
Hines, M.2
Hill, S.L.3
Goodman, P.H.4
Markram, H.5
-
40
-
-
84855407690
-
Visualizing neuronal network connectivity with connectivity pattern tables
-
Nordlie E, Plesser HE, (2009) Visualizing neuronal network connectivity with connectivity pattern tables. Frontiers in Neuroinformatics 3: 39.
-
(2009)
Frontiers in Neuroinformatics
, vol.3
, pp. 39
-
-
Nordlie, E.1
Plesser, H.E.2
|