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Volumn 5, Issue 2, 2007, Pages 96-104

MorphML: Level 1 of the NeuroML standards for neuronal morphology data and model specification

Author keywords

MorphML; Neuroanatomical data; Neurolucida; NeuroML; Neuronal digitization; Neuronal morphology; Neuroscience standards

Indexed keywords

CELL STRUCTURE; COMPUTER PROGRAM; ELECTRIC CONDUCTIVITY; INFORMATION SCIENCE; MORPHOLOGY; NERVE CELL; NEUROANATOMY; NEUROIMAGING; PRIORITY JOURNAL; REVIEW; BIOLOGICAL MODEL; COMPUTER SIMULATION; IMAGE PROCESSING; METHODOLOGY; STANDARD; ULTRASTRUCTURE;

EID: 34147178884     PISSN: 15392791     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12021-007-0003-6     Document Type: Review
Times cited : (48)

References (28)
  • 1
    • 33645278642 scopus 로고    scopus 로고
    • Mobilizing the base of neuroscience data: The case of neuronal morphologies
    • Ascoli, G. A. (2006). Mobilizing the base of neuroscience data: the case of neuronal morphologies. Nature Reviews Neuroscience, 7, 318-324.
    • (2006) Nature Reviews Neuroscience , vol.7 , pp. 318-324
    • Ascoli, G.A.1
  • 3
    • 2542433129 scopus 로고    scopus 로고
    • Simulator-independent representation of ionic conductance models with ChannelDB
    • Beeman, D., & Bower, J. M. (2004). Simulator-independent representation of ionic conductance models with ChannelDB. Neurocomputers, 58-60, 1085-1090.
    • (2004) Neurocomputers , vol.58-60 , pp. 1085-1090
    • Beeman, D.1    Bower, J.M.2
  • 6
    • 27844496066 scopus 로고    scopus 로고
    • A cross-platform freeware tool for digital reconstruction of neuronal arborizations from image stacks
    • Brown, K. M., Donohue, D. E., D'Alessandro, G., & Ascoli, G. A. (2005). A cross-platform freeware tool for digital reconstruction of neuronal arborizations from image stacks. Neuroinformatics, 3, 343-360.
    • (2005) Neuroinformatics , vol.3 , pp. 343-360
    • Brown, K.M.1    Donohue, D.E.2    D'Alessandro, G.3    Ascoli, G.A.4
  • 9
    • 40549131156 scopus 로고    scopus 로고
    • XML for model specification in neuroscience: An introduction & workshop summary
    • bmm228 (urn:nbn:de:0009-3-2282).
    • Crook, S., Beeman, D., Gleeson, P., & Howell, F. (2005). XML for model specification in neuroscience: An introduction & workshop summary. Brains, Minds, and Media, 1, bmm228 (urn:nbn:de:0009-3-2282).
    • (2005) Brains, Minds, and Media , vol.1
    • Crook, S.1    Beeman, D.2    Gleeson, P.3    Howell, F.4
  • 10
    • 40549112537 scopus 로고    scopus 로고
    • XML for data representation & model specification in neuroscience
    • C. Crasto (Ed.), Totowa: Humana.
    • Crook, S. & Howell, F. (2007). XML for data representation & model specification in neuroscience. In: C. Crasto (Ed.), Neuroinformatics, methods in molecular biology book series. Totowa: Humana.
    • (2007) Neuroinformatics, Methods in Molecular Biology Book Series
    • Crook, S.1    Howell, F.2
  • 12
    • 0025483799 scopus 로고
    • Neuron imaging with Neurolucida-a PC-based system for image combining microscopy
    • Glaser, J. R., & Glaser, E. M. (1990). Neuron imaging with Neurolucida-a PC-based system for image combining microscopy. Computerized Medical Imaging and Graphics, 14, 307-317.
    • (1990) Computerized Medical Imaging and Graphics , vol.14 , pp. 307-317
    • Glaser, J.R.1    Glaser, E.M.2
  • 13
    • 34147114284 scopus 로고    scopus 로고
    • NeuroConstruct: A tool for modeling networks of neurons in 3D space
    • Gleeson, P., Steuber, V., & Silver, R. A. (2007). neuroConstruct: A tool for modeling networks of neurons in 3D space. Neuron, 54, 219-235.
    • (2007) Neuron , vol.54 , pp. 219-235
    • Gleeson, P.1    Steuber, V.2    Silver, R.A.3
  • 16
    • 0031571202 scopus 로고    scopus 로고
    • The NEURON simulation environment
    • Hines, M. L., & Carnevale, N. T. (1997). The NEURON simulation environment. Neural Computation, 9, 1179-1209.
    • (1997) Neural Computation , vol.9 , pp. 1179-1209
    • Hines, M.L.1    Carnevale, N.T.2
  • 17
    • 0035080096 scopus 로고    scopus 로고
    • Neuron: A tool for neuroscientists
    • Hines, M. L., & Carnevale, N. T. (2001). Neuron: a tool for neuroscientists. The Neuroscientist, 7, 123-135.
    • (2001) The Neuroscientist , vol.7 , pp. 123-135
    • Hines, M.L.1    Carnevale, N.T.2
  • 19
    • 33646339914 scopus 로고    scopus 로고
    • Fitting experimental data to models that use morphological data from public databases
    • Holmes, W. R., Ambros-Ingerson, J., & Grover, L. M. (2006). Fitting experimental data to models that use morphological data from public databases. Journal of Computational Neuroscience, 20, 349-365.
    • (2006) Journal of Computational Neuroscience , vol.20 , pp. 349-365
    • Holmes, W.R.1    Ambros-Ingerson, J.2    Grover, L.M.3
  • 20
    • 0037342537 scopus 로고    scopus 로고
    • The system biology markup language (SBML): A medium for representation & exchange of biochemical network models
    • Hucka, M. et al. (2003). The system biology markup language (SBML): A medium for representation & exchange of biochemical network models. Bioinformatics, 19, 524-531.
    • (2003) Bioinformatics , vol.19 , pp. 524-531
    • Hucka, M.1
  • 21
    • 0026337163 scopus 로고
    • Anatomical relationships between sensory afferent arborizations in the cricket cercal system
    • Jacobs, G. A., & Nevin R. (1991). Anatomical relationships between sensory afferent arborizations in the cricket cercal system. Anatomical Record, 231, 563-572.
    • (1991) Anatomical Record , vol.231 , pp. 563-572
    • Jacobs, G.A.1    Nevin, R.2
  • 22
    • 33746421516 scopus 로고    scopus 로고
    • FIRST BIRN. a general XML schema & SPM toolbox for storage of neuro-imaging results & anatomical labels
    • Keator, D. B., Gadde S., Grethe, J. S., Taylor, D. V., & Potkin, S. G. (2006). FIRST BIRN. A general XML schema & SPM toolbox for storage of neuro-imaging results & anatomical labels. Neuroinformatics, 4, 199-212.
    • (2006) Neuroinformatics , vol.4 , pp. 199-212
    • Keator, D.B.1    Gadde, S.2    Grethe, J.S.3    Taylor, D.V.4    Potkin, S.G.5
  • 23
    • 0029741078 scopus 로고    scopus 로고
    • Influence of dendritic structure on firing pattern in model neocortical neurons
    • Mainen, Z. F., & Sejnowski, T. J. (1996). Influence of dendritic structure on firing pattern in model neocortical neurons. Nature, 382, 363-366.
    • (1996) Nature , vol.382 , pp. 363-366
    • Mainen, Z.F.1    Sejnowski, T.J.2
  • 24
    • 2142815705 scopus 로고    scopus 로고
    • E-Neuroscience: Challenges & triumphs in integrating distributed data from molecules to brains
    • Martone, M. E., Gupta, A., & Ellisman, M. H. (2004). e-Neuroscience: Challenges & triumphs in integrating distributed data from molecules to brains. Nature Neuroscience, 7, 467-472.
    • (2004) Nature Neuroscience , vol.7 , pp. 467-472
    • Martone, M.E.1    Gupta, A.2    Ellisman, M.H.3
  • 25
    • 2542431249 scopus 로고    scopus 로고
    • Tools for neuroinformatic data exchange: An XML application for neuronal morphology data
    • Qi, W., & Crook, S. (2004). Tools for neuroinformatic data exchange: An XML application for neuronal morphology data. Neurocomputing, 58C-60C, 1091-1095.
    • (2004) Neurocomputing , vol.58-60 , pp. 1091-1095
    • Qi, W.1    Crook, S.2
  • 26
    • 2342528455 scopus 로고    scopus 로고
    • Quantitative morphometry of hippocampal pyramidal cells: Differences between anatomical classes and reconstructing laboratories
    • Scorcioni, R., Lazarewicz, M. T., & Ascoli, G. A. (2004). Quantitative morphometry of hippocampal pyramidal cells: Differences between anatomical classes and reconstructing laboratories. Journal of Comparative Neurology, 473, 177-193.
    • (2004) Journal of Comparative Neurology , vol.473 , pp. 177-193
    • Scorcioni, R.1    Lazarewicz, M.T.2    Ascoli, G.A.3
  • 27
    • 1642350138 scopus 로고    scopus 로고
    • Effects of variability in anatomical reconstruction techniques on models of synaptic integration by dendrites: A comparison of three Internet archives
    • Szilagyi, T., & De Schutter, E. (2004). Effects of variability in anatomical reconstruction techniques on models of synaptic integration by dendrites: a comparison of three Internet archives. European Journal of Neuroscience, 19, 1257-1266.
    • (2004) European Journal of Neuroscience , vol.19 , pp. 1257-1266
    • Szilagyi, T.1    De Schutter, E.2
  • 28
    • 0035128831 scopus 로고    scopus 로고
    • Propagation of action potentials in dendrites depends on dendritic morphology
    • Vetter, P., Roth, A., & Hausser, M. (2001). Propagation of action potentials in dendrites depends on dendritic morphology. Journal of Neurophysiology, 85, 926-937.
    • (2001) Journal of Neurophysiology , vol.85 , pp. 926-937
    • Vetter, P.1    Roth, A.2    Hausser, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.