메뉴 건너뛰기




Volumn 7, Issue 4, 2006, Pages 318-324

Mobilizing the base of neuroscience data: The case of neuronal morphologies

Author keywords

[No Author keywords available]

Indexed keywords

BIOINFORMATICS; CELL STRUCTURE; COMPUTER PROGRAM; COMPUTER SIMULATION; EXPERIENCE; MATHEMATICAL MODEL; MEDICAL RESEARCH; NERVE CELL; NEUROSCIENCE; PRIORITY JOURNAL; PRIVACY; REVIEW;

EID: 33645278642     PISSN: 1471003X     EISSN: 14710048     Source Type: Journal    
DOI: 10.1038/nrn1885     Document Type: Review
Times cited : (190)

References (62)
  • 1
    • 33645309538 scopus 로고    scopus 로고
    • Human Brain Project [Online], 〈http://www.nimh.nih.gov/ neuroinformatics/index.cfm〉 (2006).
    • (2006) Human Brain Project [Online]
  • 2
    • 16544365678 scopus 로고    scopus 로고
    • Celebrating a decade of neuroscience databases: Looking to the future of high-throughput data analysis, data integration, and discovery neuroscience
    • Koslow, S. H. & Hirsch, M. D. Celebrating a decade of neuroscience databases: looking to the future of high-throughput data analysis, data integration, and discovery neuroscience. Neuroinformatics 2, 267-270 (2004).
    • (2004) Neuroinformatics , vol.2 , pp. 267-270
    • Koslow, S.H.1    Hirsch, M.D.2
  • 5
    • 0033860985 scopus 로고    scopus 로고
    • Should the neuroscience community make a paradigm shift to sharing primary data?
    • Koslow, S. H. Should the neuroscience community make a paradigm shift to sharing primary data? Nature Neurosci. 3, 863-865 (2000).
    • (2000) Nature Neurosci. , vol.3 , pp. 863-865
    • Koslow, S.H.1
  • 6
    • 12444268936 scopus 로고    scopus 로고
    • Neuroscience data and tool sharing: A legal and policy framework for neuroinformatics
    • Eckersley, P. et al. Neuroscience data and tool sharing: a legal and policy framework for neuroinformatics. Neuroinformatics 1, 149-165 (2003).
    • (2003) Neuroinformatics , vol.1 , pp. 149-165
    • Eckersley, P.1
  • 7
    • 0038745495 scopus 로고    scopus 로고
    • An information science infrastructure for neuroscience
    • Ascoli, G. A., De Schutter, E. & Kennedy, D. N. An information science infrastructure for neuroscience. Neuroinformatics 1, 1-2 (2003).
    • (2003) Neuroinformatics , vol.1 , pp. 1-2
    • Ascoli, G.A.1    De Schutter, E.2    Kennedy, D.N.3
  • 10
    • 16544381692 scopus 로고    scopus 로고
    • A gateway to the future of neuroinformatics
    • Gardner, D. & Shepherd, G. M. A gateway to the future of neuroinformatics. Neuroinformatics 2, 271-274 (2004).
    • (2004) Neuroinformatics , vol.2 , pp. 271-274
    • Gardner, D.1    Shepherd, G.M.2
  • 11
    • 0036546074 scopus 로고    scopus 로고
    • Sharing primary data: A threat or asset to discovery?
    • Koslow, S. H. Sharing primary data: a threat or asset to discovery? Nature Rev. Neurosci. 3, 311-313 (2002).
    • (2002) Nature Rev. Neurosci. , vol.3 , pp. 311-313
    • Koslow, S.H.1
  • 12
    • 0033860984 scopus 로고    scopus 로고
    • Editorial. A debate over fMRI data sharing
    • Editorial. A debate over fMRI data sharing. Nature Neurosci. 3, 845-846 (2000).
    • (2000) Nature Neurosci. , vol.3 , pp. 845-846
  • 14
    • 0242321783 scopus 로고    scopus 로고
    • The cell-centered database: A database for multiscale structural and protein localization data from light and electron microscopy
    • Martone, M. E. et al. The cell-centered database: a database for multiscale structural and protein localization data from light and electron microscopy. Neuroinformatics 1, 379-395 (2003).
    • (2003) Neuroinformatics , vol.1 , pp. 379-395
    • Martone, M.E.1
  • 15
    • 0035374711 scopus 로고    scopus 로고
    • The sharing of cDNA microarray data
    • Becker, K. G. The sharing of cDNA microarray data. Nature Rev. Neurosci. 2, 438-440 (2001).
    • (2001) Nature Rev. Neurosci. , vol.2 , pp. 438-440
    • Becker, K.G.1
  • 16
    • 0035377403 scopus 로고    scopus 로고
    • Sharing gene expression data: An array of options
    • Geschwind, D. H. Sharing gene expression data: an array of options. Nature Rev. Neurosci. 2, 435-438 (2001).
    • (2001) Nature Rev. Neurosci. , vol.2 , pp. 435-438
    • Geschwind, D.H.1
  • 17
    • 0035378234 scopus 로고    scopus 로고
    • Microarrays: Lost in a storm of data?
    • Miles, M. F. Microarrays: lost in a storm of data? Nature Rev. Neurosci. 2, 441-443 (2001).
    • (2001) Nature Rev. Neurosci. , vol.2 , pp. 441-443
    • Miles, M.F.1
  • 19
    • 6344245918 scopus 로고    scopus 로고
    • Online retrieval, processing, and visualization of primate connectivity data from the CoCoMac database
    • Kotter, R. Online retrieval, processing, and visualization of primate connectivity data from the CoCoMac database. Neuroinformatics 2, 127-144 (2004).
    • (2004) Neuroinformatics , vol.2 , pp. 127-144
    • Kotter, R.1
  • 20
  • 21
    • 0032127401 scopus 로고    scopus 로고
    • Database tools for integrating and searching membrane property data correlated with neuronal morphology
    • Mirsky, J. S., Nadkarni, P. M., Healy, M. D., Miller, P. L. & Shepherd, G. M. Database tools for integrating and searching membrane property data correlated with neuronal morphology. J. Neurosci. Methods 82, 105-121 (1998).
    • (1998) J. Neurosci. Methods , vol.82 , pp. 105-121
    • Mirsky, J.S.1    Nadkarni, P.M.2    Healy, M.D.3    Miller, P.L.4    Shepherd, G.M.5
  • 24
    • 0025483799 scopus 로고
    • Neuron imaging with Neurolucida - A PC-based system for image combining microscopy
    • Glaser, J. R. & Glaser, E. M. Neuron imaging with Neurolucida - a PC-based system for image combining microscopy. Comput. Med. Imaging Graph. 14, 307-317 (1990).
    • (1990) Comput. Med. Imaging Graph. , vol.14 , pp. 307-317
    • Glaser, J.R.1    Glaser, E.M.2
  • 25
    • 27844496066 scopus 로고    scopus 로고
    • A cross-platform freeware tool for digital reconstruction of neuronal arborizations from image stacks
    • Brown, K. M., Donohue, D. E., D'Alessandro, G. & Ascoli, G. A. A cross-platform freeware tool for digital reconstruction of neuronal arborizations from image stacks. Neuroinformatics 3, 343-360 (2005).
    • (2005) Neuroinformatics , vol.3 , pp. 343-360
    • Brown, K.M.1    Donohue, D.E.2    D'Alessandro, G.3    Ascoli, G.A.4
  • 26
    • 0033231865 scopus 로고    scopus 로고
    • Dendrites of classes of hippocampal neurons differ in structural complexity and branching patterns
    • Cannon, R. C., Wheal, H. V. & Turner, D. A. Dendrites of classes of hippocampal neurons differ in structural complexity and branching patterns. J. Comp. Neurol. 413, 619-633 (1999).
    • (1999) J. Comp. Neurol. , vol.413 , pp. 619-633
    • Cannon, R.C.1    Wheal, H.V.2    Turner, D.A.3
  • 27
    • 13244265508 scopus 로고    scopus 로고
    • Developmental changes in spinal motoneuron dendrites in neonatal mice
    • Li, Y., Brewer, D., Burke, R. E. & Ascoli, G. A. Developmental changes in spinal motoneuron dendrites in neonatal mice. J. Comp. Neurol. 483, 304-317 (2005).
    • (2005) J. Comp. Neurol. , vol.483 , pp. 304-317
    • Li, Y.1    Brewer, D.2    Burke, R.E.3    Ascoli, G.A.4
  • 29
    • 33645317524 scopus 로고    scopus 로고
    • Senselab ModelDB [Online], 〈http://senselab.med.yale.edu/senselab/ modeldb〉 (2006).
    • (2006) Senselab ModelDB [Online]
  • 30
    • 0029741078 scopus 로고    scopus 로고
    • Influence of dendritic structure on firing pattern in model neocortical neurons
    • Mainen, Z. F. & Sejnowski, T. J. Influence of dendritic structure on firing pattern in model neocortical neurons. Nature 382, 363-366 (1996).
    • (1996) Nature , vol.382 , pp. 363-366
    • Mainen, Z.F.1    Sejnowski, T.J.2
  • 31
    • 0037150755 scopus 로고    scopus 로고
    • Effects of dendritic morphology on CA3 pyramidal cell electrophysiology: A simulation study
    • Krichmar, J. L., Nasuto, S. J., Scorcioni, R., Washington, S. D. & Ascoli, G. A. Effects of dendritic morphology on CA3 pyramidal cell electrophysiology: a simulation study. Brain Res. 941, 11-28 (2002).
    • (2002) Brain Res. , vol.941 , pp. 11-28
    • Krichmar, J.L.1    Nasuto, S.J.2    Scorcioni, R.3    Washington, S.D.4    Ascoli, G.A.5
  • 32
    • 0041470138 scopus 로고    scopus 로고
    • Neuroanatomical algorithms for dendritic modelling
    • Ascoli, G. A. Neuroanatomical algorithms for dendritic modelling. Network 13, 247-260 (2002).
    • (2002) Network , vol.13 , pp. 247-260
    • Ascoli, G.A.1
  • 33
    • 20744456035 scopus 로고    scopus 로고
    • Neurogeometry and potential synaptic connectivity
    • Stepanyants, A. & Chklovskii, D. B. Neurogeometry and potential synaptic connectivity. Trends Neurosci. 28, 387-394 (2005).
    • (2005) Trends Neurosci. , vol.28 , pp. 387-394
    • Stepanyants, A.1    Chklovskii, D.B.2
  • 34
    • 31444442519 scopus 로고    scopus 로고
    • The blue brain project
    • Markram, H. The blue brain project. Nature Rev. Neurosci. 7, 153-160 (2006).
    • (2006) Nature Rev. Neurosci. , vol.7 , pp. 153-160
    • Markram, H.1
  • 35
    • 12444315058 scopus 로고    scopus 로고
    • Towards effective and rewarding data sharing
    • Gardner, D. et al. Towards effective and rewarding data sharing. Neuroinformatics 1, 289-295 (2003).
    • (2003) Neuroinformatics , vol.1 , pp. 289-295
    • Gardner, D.1
  • 36
    • 0042739762 scopus 로고    scopus 로고
    • Automated three-dimensional tracing of neurons in confocal and brightfield images
    • He, W. et al. Automated three-dimensional tracing of neurons in confocal and brightfield images. Microsc. Microanal. 9, 296-310 (2003).
    • (2003) Microsc. Microanal. , vol.9 , pp. 296-310
    • He, W.1
  • 37
    • 0037402856 scopus 로고    scopus 로고
    • Automated reconstruction of three-dimensional neuronal morphology from laser scanning microscopy images
    • Rodriguez, A. et al. Automated reconstruction of three-dimensional neuronal morphology from laser scanning microscopy images. Methods 30, 94-105 (2003).
    • (2003) Methods , vol.30 , pp. 94-105
    • Rodriguez, A.1
  • 38
    • 7744235523 scopus 로고    scopus 로고
    • New methods for the computer-assisted 3-D reconstruction of neurons from confocal image stacks
    • Schmitt, S., Evers, J. F., Duch, C., Scholz, M. & Obermayer, K. New methods for the computer-assisted 3-D reconstruction of neurons from confocal image stacks. Neuroimage 23, 1283-1298 (2004).
    • (2004) Neuroimage , vol.23 , pp. 1283-1298
    • Schmitt, S.1    Evers, J.F.2    Duch, C.3    Scholz, M.4    Obermayer, K.5
  • 41
    • 0041819323 scopus 로고    scopus 로고
    • Non-curated distributed databases for experimental data and models in neuroscience
    • Cannon, R. C., Howell, F. W., Goddard, N. H. & De Schutter, E. Non-curated distributed databases for experimental data and models in neuroscience. Network 13, 415-428 (2002).
    • (2002) Network , vol.13 , pp. 415-428
    • Cannon, R.C.1    Howell, F.W.2    Goddard, N.H.3    De Schutter, E.4
  • 42
    • 2342528455 scopus 로고    scopus 로고
    • Quantitative morphometry of hippocampal pyramidal cells: Differences between anatomical classes and reconstructing laboratories
    • Scorcioni, R., Lazarewicz, M. T. & Ascoli, G. A. Quantitative morphometry of hippocampal pyramidal cells: differences between anatomical classes and reconstructing laboratories. J. Comp. Neurol. 473, 177-193 (2004).
    • (2004) J. Comp. Neurol. , vol.473 , pp. 177-193
    • Scorcioni, R.1    Lazarewicz, M.T.2    Ascoli, G.A.3
  • 43
    • 31944436898 scopus 로고    scopus 로고
    • Morphological homeostasis in cortical dendrites
    • Samsonovich, A. V. & Ascoli, G. A. Morphological homeostasis in cortical dendrites. Proc. Natl Acad. Sci. USA 103, 1569-1574 (2006).
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 1569-1574
    • Samsonovich, A.V.1    Ascoli, G.A.2
  • 44
    • 27844436542 scopus 로고    scopus 로고
    • The impact of neuroinformatics
    • Kennedy, D. N. The impact of neuroinformatics. Neuroinformatics 3, 287-292 (2005).
    • (2005) Neuroinformatics , vol.3 , pp. 287-292
    • Kennedy, D.N.1
  • 49
    • 33645291123 scopus 로고    scopus 로고
    • BrainInfo [Online], 〈http://www.braininfo.org〉 (2006).
    • (2006) BrainInfo [Online]
  • 51
  • 58
    • 0003656693 scopus 로고    scopus 로고
    • Algorithmic extraction of morphological statistics from electronic archives of neuroanatomy
    • Scorcioni, R. & Ascoli, G. A. Algorithmic extraction of morphological statistics from electronic archives of neuroanatomy. Lect. Notes Comp. Sci. 2084, 30-37 (2001).
    • (2001) Lect. Notes Comp. Sci. , vol.2084 , pp. 30-37
    • Scorcioni, R.1    Ascoli, G.A.2
  • 59
    • 0033913163 scopus 로고    scopus 로고
    • L-Neuron: A modeling tool for the efficient generation and parsimonious description of dendritic morphology
    • Ascoli, G. A. & Krichmar, J. L. L-Neuron: a modeling tool for the efficient generation and parsimonious description of dendritic morphology. Neurocomputing 32-33, 1003-1011 (2000).
    • (2000) Neurocomputing , vol.32-33 , pp. 1003-1011
    • Ascoli, G.A.1    Krichmar, J.L.2
  • 61
    • 28044446735 scopus 로고    scopus 로고
    • Signal propagation in oblique dendrites of CA1 pyramidal cells
    • Migliore, M., Ferrante, M. & Ascoli, G. A. Signal propagation in oblique dendrites of CA1 pyramidal cells. J. Neurophysiol. 94, 4145-4155 (2005).
    • (2005) J. Neurophysiol. , vol.94 , pp. 4145-4155
    • Migliore, M.1    Ferrante, M.2    Ascoli, G.A.3
  • 62
    • 16344392542 scopus 로고    scopus 로고
    • Statistical determinants of dendritic morphology in hippocampal pyramidal neurons: A hidden Markov model
    • Samsonovich, A. V. & Ascoli, G. A. Statistical determinants of dendritic morphology in hippocampal pyramidal neurons: a hidden Markov model. Hippocampus 15, 166-183 (2005).
    • (2005) Hippocampus , vol.15 , pp. 166-183
    • Samsonovich, A.V.1    Ascoli, G.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.