NeuroSpaces: Separating modeling and simulation

Neurocomputing

Volumn 52-54, Issue , 2003, Pages 227-231

  Cornelis, Hugo ^a   De Schutter, Erik ^a  

^a UNIVERSITY OF ANTWERP   (Belgium)

Author keywords

Analysis; Modeling; Simulator

Indexed keywords

HIERARCHICAL SYSTEMS; MATHEMATICAL MODELS; NEUROLOGY;

BIOLOGICAL REALITY;

COMPUTER SOFTWARE;

ARTICLE; ARTIFICIAL NEURAL NETWORK; COMPUTER MEMORY; COMPUTER PROGRAM; CONTROLLED STUDY; MATHEMATICAL MODEL; NEUROBIOLOGY; PRIORITY JOURNAL; SIMULATION;

EID: 0037706913     PISSN: 09252312     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0925-2312(02)00750-6     Document Type: Article

References (14)

1. H. Cornelis, E. DeSchutter, Treespaces, Tech. Rep., UIA, University of Antwerp, Universiteitsplein 1, Wilrijk, Antwerp, December 2001.
2. H. Cornelis, E. DeSchutter, The purkinje cell tutorial, Available from the Genesis source code distribution. http://www.genesis-sim.org, May 2002.
3. H. Cornelis, E. DeSchutter, Tutorial: Simulations with genesis using hsolve. Internal Document, November 2002 (This will probably be included soon in the Genesis source code distribution. http://www.genesis-sim.org.).
4. E. DeSchutter, D. Beeman, in: the Book of Genesis, 1st Edition, Springer, Berlin, 1988 (Speeding up large simulations, Chapter 22).
5. E. DeSchutter, J. Bower, Simulated responses of cerebellar purkinje cells are independent of the dentritic location of granule cell synaptic inputs, Proc. Natl. Acad. Sci. USA 91 (1994) 4736-4740.
6. E. Gamma, R. Helm, R. Johnson, J. Vlissides, Design Patterns, Elements of Reusable Object-Oriented Software, Professional computing series. Addison Wesley, Reading, MA, 1995.
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8. N.H. Goddard, M. Hucka, F. Howell, H. Cornelis, K. Shankar, D. Beeman, Towards neuroml: Model description methods for collaborative modelling in neuroscience, Philos. Trans. Roy. Soc. Ser. B: Biological Sciences 356 (2001) 1-20 (Theme Issue organized and edited by Rolf Kötter on "Neuroscience databases-tools for exploring brain structure-function relationship").
9. F. Howell, J. Dyhrfjeld-Johnsen, R. Maex, N. Goddard, E. DeSchutter, A large-scale network model of the cerebellar cortex using pgenesis, Neurocomputing 32 (2000) 1041-1046.
10. M. Hucka, A. Finney, H. Sauro, H. Bolouri, J. Doyle, K. Kitano, Foundations of Systems Biology, MIT Press, Cambridge, MA, 2001 (The ERATO Systems Biology Workbench: an Integrated Environment for Multiscale and Multitheoretic Simulations in Systems Biology, Chapter).
11. R. Maex, E. DeSchutter, Synchronization of golgi and granule cell firing in a detailed network model of the cerebellar granule cell layer, J. Neurophys. 80 (1998) 2521-2537.
12. R. Sedgewick, Algorithms in C, Parts 1-4, Fundamentals, Data Structures, Sorting, Searching, 3rd Edition, Addison-Wesley, Reading, MA, 1999.
13. R. Sedgewick, Algorithms in C, Part 5, Graph Algorithms, 3rd Edition, Addison-Wesley, Reading, MA, 2002.
14. J.-F. Vilbert, Xnbc v9, a user friendly simulation and analysis tool for neurobiologists, Neurocomputing 38-40 (2001) 1715-1723.