Towards NeuroML: Model description methods for collaborative modelling in neuroscience

Philosophical Transactions of the Royal Society B: Biological Sciences

Volumn 356, Issue 1412, 2001, Pages 1209-1228

  Goddard, N H ^a   Hucka, M ^a   Howell, F ^a   Cornelis, H ^a   Shankar, K ^a   Beeman, D ^a  

^a UNIVERSITY OF EDINBURGH   (United Kingdom)

Author keywords

Computational models; Databases; Interoperability; NeuroML; Simulation

Indexed keywords

PHYSIOLOGY;

ANIMALIA;

EID: 0035968419     PISSN: 09628436     EISSN: None     Source Type: Journal    
DOI: 10.1098/rstb.2001.0910     Document Type: Review

References (36)

1. The GENESIS simulator-based neuronal database
2. XML and the second-generation web
3. Knowledge management of the neuroscientific literature: The data model and underlying strategy of the NeuroScholar system
4. The CATACOMB simulation environment
5. The Modeler's Workspace: A distributed digital library for neuroscience
6. Parallel discrete event simulation
7. Common data model 2000: Open methods for neuroscience data description and interchange
8. Common data model for neuroscience data and data model exchange
9. Dynamic publication model for neurophysiology databases
10. Rochester connectionist simulation environment
11. Parallel GENESIS
12. Neosim: Portable large-scale plug and play neuronal modelling
13. Efficient computation of branched nerve equations
14. The NEURON simulation environment
15. A quantitative description of membrane current and its application to conduction and excitation in nerve
16. A large-scale network model of the cerebellar cortex using PGENESIS
17. The ERATO systems biology workbench: An integrated environment for multiscale and multitheoretic simulations in systems biology
18. The Modeler's Workspace: Making model-based studies of the nervous system more accessible
19. Database tools for integrating and searching membrane property data correlated with neuronal morphology
20. The Hodgkin-Huxley model
21. ModelDB: An environment for running and storing computational models and their results applied to neuroscience
22. Cable theory for dendritic neurons
23. Compartmental models of complex neurons
24. The Human Brain Project: Neuroinformatics tools for integrating, searching and modelling multidisciplinary neuroscience data
25. A model of a CA3 hippocampal pyramidal neuron incorporating voltage-clamp data on intrinsic conductances
26. XNBC V9: A user friendly simulation and analysis tool for neurobiologists