A microarray biosensor for multiplexed detection of microbes using grating-coupled surface plasmon resonance imaging

Environmental Science and Technology

Volumn 46, Issue 1, 2012, Pages 348-359

  Marusov, Gregory ^a   Sweatt, Andrew ^a   Pietrosimone, Kathryn ^a   Benson, David ^a   Geary, Steven J ^a   Silbart, Lawrence K ^a   Challa, Sreerupa ^a   Lagoy, Jacqueline ^a   Lawrence, David A ^b   Lynes, Michael A ^a  

^a UNIVERSITY OF CONNECTICUT   (United States)

^b WADSWORTH CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTES; BACILLUS GLOBIGII; BACTERIAL CELLS; CHIP SURFACES; DISCRETE REGIONS; DISPOSABLE BIOSENSOR; DYNAMIC RANGE; ENVIRONMENTAL AGENTS; ENVIRONMENTAL SENSING; EXOTOXIN A; GOLD-COATED; INCIDENT LIGHT; LABEL FREE; LISTERIA MONOCYTOGENES; LOW COSTS; M13 BACTERIOPHAGE; MULTIPLE ANALYTES; MULTIPLEXED DETECTION; MYCOPLASMA HYOPNEUMONIAE; NANOLITERS; OPTICAL DIFFRACTIONS; PSEUDOMONAS AERUGINOSA; SENSOR CHIPS; SOLUBLE PROTEINS; SPECIFIC CAPTURE; SURFACE PLASMON RESONANCE IMAGING; SURFACE PLASMONS;

ANTIBODIES; BACTERIA; BACTERIOLOGY; ESCHERICHIA COLI; GOLD COATINGS; METABOLITES; MULTIPLEXING; PATHOGENS; PLASMONS; SENSORS; SURFACE PLASMON RESONANCE; VIRUSES;

BIOSENSORS;

ANTIBODY; BACTERIAL TOXIN; EXOTOXIN; PROTEIN;

ANTIGEN; ARRAY; BACTERIOPHAGE; BACTERIUM; BIOASSAY; DETECTION METHOD; IMAGE ANALYSIS; IMMOBILIZATION; MOLECULAR ANALYSIS; PATHOGENICITY; PROTEIN; RESONANCE;

ARTICLE; BACILLUS SUBTILIS; BACTERIAL CELL; BACTERIOPHAGE M13; BIOSENSOR; CONTROLLED STUDY; DIFFRACTION; ESCHERICHIA COLI; GRATING; GRATING COUPLED SURFACE PLASMON RESONANCE IMAGING; LISTERIA MONOCYTOGENES; MACROMOLECULE; MICROARRAY ANALYSIS; MICROORGANISM DETECTION; MYCOPLASMA HYOPNEUMONIAE; NONHUMAN; PANTOEA AGGLOMERANS; PROTEIN ANALYSIS; PSEUDOMONAS AERUGINOSA; SURFACE PLASMON RESONANCE; VIRUS; VIRUS PARTICLE;

ANIMALS; ANTIBODIES; BACTERIA; MICROARRAY ANALYSIS; PARTICULATE MATTER; SOLUBILITY; SURFACE PLASMON RESONANCE; TOXINS, BIOLOGICAL; VIRION;

BACILLUS SUBTILIS; BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; LISTERIA MONOCYTOGENES; MYCOPLASMA HYOPNEUMONIAE; PSEUDOMONAS AERUGINOSA;

EID: 84855313434     PISSN: 0013936X     EISSN: 15205851     Source Type: Journal    
DOI: 10.1021/es201239f     Document Type: Article

References (81)

1. Ivnitski, D.; Abdel-Hamid, I.; Atanasov, P.; Wilkins, E. Biosensors for detection of pathogenic bacteria Biosens. Bioelectron. 1999, 14 (7) 599
2. Yang, S.; Rothman, R. E. PCR-based diagnostics for infectious diseases: uses, limitations, and future applications in acute-care settings Lancet Infect. Dis. 2004, 4 (6) 337-48
3. Sergeev, N.; Distler, M.; Courtney, S.; Al-Khaldi, S. F.; Volokhov, D.; Chizhikov, V.; Rasooly, A. Multipathogen oligonucleotide microarray for environmental and biodefense applications Biosens. Bioelectron. 2004, 20 (4) 684-98
4. Pozhitkov, A. E.; Tautz, D.; Noble, P. A. Oligonucleotide microarrays: Widely applied-poorly understood Briefings Funct. Genomics Proteomics 2007, 6 (2) 141-8
5. Haagmans, B. L.; Andeweg, A. C.; Osterhaus, A. D. The application of genomics to emerging zoonotic viral diseases PLoS Pathog. 2009, 5 (10) e1000557
6. Ince, J.; McNally, A. Development of rapid, automated diagnostics for infectious disease: advances and challenges Expert Rev. Med. Devices 2009, 6, 641
7. Yongfeng, H.; Fan, Y.; Jie, D.; Jian, Y.; Ting, Z.; Lilian, S.; Jin, Q. Direct pathogen detection from swab samples using a new high-throughput sequencing technology Clin. Microbiol. Infect. 2011, 17 (2) 241-4
8. Brockman, J. M.; Nelson, B. P.; Corn, R. M. Surface plasmon resonance imaging measurements of ultrathin organic films Annu. Rev. Phys. Chem. 2000, 51, 41-63
9. Soelberg, S. D.; Chinowsky, T.; Geiss, G.; Spinelli, C. B.; Stevens, R.; Near, S.; Kauffman, P.; Yee, S.; Furlong, C. E. A portable surface plasmon resonance sensor system for real-time monitoring of small to large analytes J. Ind. Microbiol. Biotechnol. 2005, 32 (11-12) 669-74
10. Homola, J.; Piliarik, M., Surface plasmon resonance (SPR) sensors. In Surface Plasmon Resonance Based Sensors; Springer: Berlin Heidelberg: 2006; Vol. 4, pp 45-67.
11. Kretschmann, E.; Raether, H. Radiative decay of non-radiative surface plasmon excited by light Naturforsh 1968, 23A, 2135-6
12. Homola, J. Surface plasmon resonance sensors for detection of chemical and biological species Chem. Rev. 2008, 108 (2) 462-493
13. Subramanian, A.; Irudayaraj, J.; Ryan, T. Mono and dithiol surfaces on surface plasmon resonance biosensors for detection of Staphylococcus aureus Sens. Actuators, B 2006, 114 (1) 192
14. Waswa, J.; Irudayaraj, J.; DebRoy, C. Direct detection of E. Coli O157:H7 in selected food systems by a surface plasmon resonance biosensor LWT-Food Sci. Technol. 2007, 40 (2) 187
15. Koubová, V.; Brynda, E.; Karasová, L.; Skvor, J.; Homola, J.; Dostálek, J.; Tobiska, P.; Rosický, J. Detection of foodborne pathogens using surface plasmon resonance biosensors Sens. Actuators, B 2001, 74 (1-3) 100-105
16. Jyoung, J.-Y.; Hong, S.; Lee, W.; Choi, J.-W. Immunosensor for the detection of Vibrio cholerae O1 using surface plasmon resonance Biosens. Bioelectron. 2006, 21 (12) 2315-2319
17. Kang, C. D.; Lee, S. W.; Park, T. H.; Sim, S. J. Performance enhancement of real-time detection of protozoan parasite, Cryptosporidium oocyst by a modified surface plasmon resonance (SPR) biosensor Enzyme Microb. Technol. 2006, 39 (3) 387-390
18. Leonard, P.; Hearty, S.; Quinn, J.; O'Kennedy, R. A generic approach for the detection of whole Listeria monocytogenes cells in contaminated samples using surface plasmon resonance Biosens Bioelectron 2004, 19 (10) 1331-5
19. Skottrup, P.; Nicolaisen, M.; Justesen, A. F. Rapid determination of Phytophthora infestans sporangia using a surface plasmon resonance immunosensor J. Microbiol. Methods 2007, 68 (3) 507-15
20. Boltovets, P. M.; Snopok, B. A.; Boyko, V. R.; Shevchenko, T. P.; Dyachenko, N. S.; Shirshov, Y. M. Detection of plant viruses using a surface plasmon resonance via complexing with specific antibodies J. Virol. Methods 2004, 121 (1) 101-6
21. Gomara, M. J.; Ercilla, G.; Alsina, M. A.; Haro, I. Assessment of synthetic peptides for hepatitis A diagnosis using biosensor technology J. Immunol. Methods 2000, 246 (1-2) 13-24
22. Nedelkov, D.; Nelson, R. W. Detection of staphylococcal enterotoxin B via biomolecular interaction analysis mass spectrometry Appl. Environ. Microbiol. 2003, 69 (9) 5212-5215
23. Tsai, W.-C.; Li, I.-C. SPR-based immunosensor for determining staphylococcal enterotoxin A Sens. Actuators, B 2009, 136 (1) 8-12
24. Vaisocherová, H.; Mrkvová, K.; Piliarik, M.; Jinoch, P.; Steinbachová, M.; Homola, J. Surface plasmon resonance biosensor for direct detection of antibody against Epstein-Barr virus Biosens. Bioelectron. 2007, 22 (6) 1020-1026
25. Chung, J. W.; Kim, S. D.; Bernhardt, R.; Pyun, J. C. Application of SPR biosensor for medical diagnostics of human hepatitis B virus (hHBV) Sens. Actuators, B 2005, 111-112, 416-422
26. Chinowsky, T. M.; Soelberg, S. D.; Baker, P.; Swanson, N. R.; Kauffman, P.; Mactutis, A.; Grow, M. S.; Atmar, R.; Yee, S. S.; Furlong, C. E. Portable 24-analyte surface plasmon resonance instruments for rapid, versatile biodetection Biosens. Bioelectron. 2007, 22 (9-10) 2268
27. Homola, J.; Lu, H. B.; Nenninger, G. G.; Dostálek, J.; Yee, S. S. A novel multichannel surface plasmon resonance biosensor Sens. Actuators, B 2001, 76 (1-3) 403-410
28. Homola, J.; Yee, S. S.; Gauglitz, G. n. Surface plasmon resonance sensors: review Sens. Actuators, B 1999, 54 (1-2) 3-15
29. Dostálek, J.; Vaisocherová, H.; Homola, J. Multichannel surface plasmon resonance biosensor with wavelength division multiplexing Sens. Actuators, B 2005, 108 (1-2) 758-764
30. Scarano, S.; Mascini, M.; Turner, A. P.; Minunni, M. Surface plasmon resonance imaging for affinity-based biosensors Biosens Bioelectron 2010, 25 (5) 957-66
31. Lee, K. H.; Su, Y. D.; Chen, S. J.; Tseng, F. G.; Lee, G. B. Microfluidic systems integrated with two-dimensional surface plasmon resonance phase imaging systems for microarray immunoassay Biosens Bioelectron 2007, 23 (4) 466-72
32. Piliarik, M.; Vaisocherová, H.; Homola, J. A new surface plasmon resonance sensor for high-throughput screening applications Biosens. Bioelectron. 2005, 20 (10) 2104-10
33. Beusink, J. B.; Lokate, A. M. C.; Besselink, G. A. J.; Pruijn, G. J. M.; Schasfoort, R. B. M. Angle-scanning SPR imaging for detection of biomolecular interactions on microarrays Biosens. Bioelectron. 2008, 23 (6) 839-844
34. Brockman, J. M.; Fernandez, S. M. Grating-coupled surface plasmon resonance for rapid, label-free, array-based sensing Am. Lab. 2001, 33 (12) 37
35. Unfricht, D. W.; Colpitts, S. L.; Fernandez, S. M.; Lynes, M. A. Grating-coupled surface plasmon resonance: a cell and protein microarray platform Proteomics 2005, 5 (17) 4432-42
36. Singh, B. K.; Hillier, A. C. Surface plasmon resonance imaging of biomolecular interactions on a grating-based sensor array Anal. Chem. 2006, 78 (6) 2009-2018
37. Lu, H. B.; Homola, J.; Campbell, C. T.; Nenninger, G. G.; Yee, S. S.; Ratner, B. D. Protein contact printing for a surface plasmon resonance biosensor with on-chip referencing Sens. Actuators, B 2001, 74 (1-3) 91-99
38. Challa, S.; Barrette, R.; Rood, D.; Zinckgraf, J.; French, R.; Silbart, L. Non-toxic Pseudomonas aeruginosa exotoxin A expressing the FMDV VP1 G-H loop for mucosal vaccination of swine against foot and mouth disease virus Vaccine 2007, 25 (17) 3328-37
39. Geary, S. J.; Walczak, E. M. Isolation of a cytopathic factor from Mycoplasma hyopneumoniae Infect. Immun. 1985, 48 (2) 576-8
40. Schell, R. F.; Lawrence, D. A. Differential effects of concanavalin A and phytohemagglutinin on murine immunity: Suppression and enhancement of cell-mediated immunity Cell. Immunol. 1977, 31 (1) 142-154
41. Jin, G. B.; Unfricht, D. W.; Fernandez, S. M.; Lynes, M. A. Cytometry on a chip: cellular phenotypic and functional analysis using grating-coupled surface plasmon resonance Biosens. Bioelectron. 2006, 22 (2) 200-6
42. Zhu, G.; Mayy, M.; Bahoura, M.; Ritzo, B. A.; Gavrilenko, H. V.; Gavrilenko, V. I.; Noginov, M. A. Elongation of surface plasmon polariton propagation length without gain Opt. Express 2008, 16 (20) 15576-83
43. Liu, H., Pathogenic bacterial sensors based on carbohydrates as sensing elements. In Principles of Bacterial Detection: Biosensors, Recognition Receptors and Microsystems; Zourob, M.; Elwary, S.; Turner, A., Eds.; Springer: New York: 2008; pp 659-687.
44. Taylor, A. D.; Yu, Q.; Chen, S.; Homola, J.; Jiang, S. Comparison of E. coli O157:H7 preparation methods used for detection with surface plasmon resonance sensor Sens. Actuators, B 2005, 107 (1) 202-208
45. Tamarin, O.; Comeau, S.; Dejous, C.; Moynet, D.; Rebiere, D.; Bezian, J.; Pistre, J. Real time device for biosensing: Design of a bacteriophage model using love acoustic waves Biosens. Bioelectron. 2003, 18 (5-6) 755-63
46. Uttenthaler, E.; Schräml, M.; Mandel, J.; Drost, S. Ultrasensitive quartz crystal microbalance sensors for detection of M13-Phages in liquids Biosens. Bioelectron. 2001, 16 (9-12) 735
47. Lee, J.; Jang, J.; Akin, D.; Savran, C. A.; Bashir, R. Real-time detection of airborne viruses on a mass-sensitive device Appl. Phys. Lett. 2008, 93 (1) 13901
48. Ilic, B.; Czaplewski, D.; Craighead, H. G.; Neuzil, P.; Campagnolo, C.; Batt, C. Mechanical resonant immunospecific biological detector Appl. Phys. Lett. 2000, 77 (3) 450-452
49. Ilic, B.; Czaplewski, D.; Zalalutdinov, M.; Craighead, H. G.; Neuzil, P.; Campagnolo, C.; Batt, C. Single cell detection with micromechanical oscillators J. Vac. Sci. Technol., B: Microelectron. Process. Phenom. 2001, 19, 2825-2828
50. Ilic, B.; Yang, Y.; Craighead, H. G. Virus detection using nanoelectromechanical devices. Nanoscale Sci. Des. 2004; Vol. 85, p 2604-2606.
51. Waggoner, P. S.; Craighead, H. G. Micro- and nanomechanical sensors for environmental, chemical, and biological detection Lab Chip 2007, 7 (10) 1238-55
52. Meeusen, C. A.; Alocilja, E. C.; Osburn, W. N. Detection of E. coli O157: H7 using a miniaturized surface plasmon resonance biosensor Trans. ASABE 2005, 48 (6) 8
53. Taylor, A. D.; Ladd, J.; Yu, Q.; Chen, S.; Homola, J.; Jiang, S. Quantitative and simultaneous detection of four foodborne bacterial pathogens with a multi-channel SPR sensor Biosens. Bioelectron. 2006, 22 (5) 752-758
54. Subramanian, A.; Irudayaraj, J.; Ryan, T. A mixed self-assembled monolayer-based surface plasmon immunosensor for detection of E. coli O157:H7 Biosens Bioelectron 2006, 21 (7) 998-1006
55. Hearty, S.; Leonard, P.; Quinn, J.; O'Kennedy, R. Production, characterisation and potential application of a novel monoclonal antibody for rapid identification of virulent Listeria monocytogenes J. Microbiol. Methods 2006, 66 (2) 294-312
56. Chung, H.; Jaykus, L. A.; Lovelace, G.; Sobsey, M. D. Bacteriophages and bacteria as indicators of enteric viruses in oysters and their harvest waters Water Sci. Technol. 1998, 38 (12) 37-44
57. Mandilara, G. D.; Smeti, E. M.; Mavridou, A. T.; Lambiri, M. P.; Vatopoulos, A. C.; Rigas, F. P. Correlation between bacterial indicators and bacteriophages in sewage and sludge FEMS Microbiol. Lett. 2006, 263 (1) 119-26
58. Moce-Llivina, L.; Muniesa, M.; Pimenta-Vale, H.; Lucena, F.; Jofre, J. Survival of bacterial indicator species and bacteriophages after thermal treatment of sludge and sewage Appl. Environ. Microbiol. 2003, 69 (3) 1452-6
59. Lucena, F.; Méndez, X.; Morón, A.; Calderón, E.; Campos, C.; Guerrero, A.; Cárdenas, M.; Gantzer, C.; Shwartzbrood, L.; Skraber, S.; Jofre, J. Occurrence and densities of bacteriophages proposed as indicators and bacterial indicators in river waters from Europe and South America J. Appl. Microbiol. 2003, 94 (5) 808-815
60. Paul, S.; Vadgama, P.; Ray, A. K. Surface plasmon resonance imaging for biosensing IET Nanobiotechnol. 2009, 3 (3) 71-80
61. Taylor, A. D.; Ladd, J.; Homola, J.; Jiang, S., Surface plasmon resonance (SPR) sensors for the detection of bacterial pathogens. In Principles of Bacterial Detection: Biosensors, Recognition Receptors and Microsystems; Zourob, M.; Elwary, S.; Turner, A., Eds.; Springer: New York, 2008; pp 83-108.
62. Dudak, F. C.; Boyaci, I. H. Rapid and label-free bacteria detection by surface plasmon resonance (SPR) biosensors Biotechnol. J. 2009, 4 (7) 1003-11
63. Kretzer, J. W.; Biebl, M.; Miller, S., Sample preparation: An essential prerequisite for high-quality bacteria detection. In Principles of Bacterial Detection: Biosensors, Recognition Receptors and Microsystems; Zourob, M.; Elwary, S.; Turner, A., Eds.; Springer: New York, 2008; pp 15-30.
64. Chapman, P. A.; Wright, D. J.; Siddons, C. A. A comparison of immunomagnetic separation and direct culture for the isolation of verocytotoxin-producing Escherichia coli 0157 from bovine faeces J. Med. Microbiol. 1994, 40 (6) 424-427
65. Park, S. M.; Huh, Y. S.; Craighead, H. G.; Erickson, D. A method for nanofluidic device prototyping using elastomeric collapse Proc. Natl. Acad. Sci. U. S. A. 2009, 106 (37) 15549-54
66. Jiang, S. C. Human adenoviruses in water: Occurrence and health implications: A critical review Environ. Sci. Technol. 2006, 40 (23) 7132-7140
67. Tuttle, J.; Gomez, T.; Doyle, M. P.; Wells, J. G.; Zhao, T.; Tauxe, R. V.; Griffin, P. M. Lessons from a large outbreak of Escherichia coli O157:H7 infections: insights into the infectious dose and method of widespread contamination of hamburger patties Epidemiol. Infect. 1999, 122 (2) 185-92
68. Dietzman, D. E.; Fischer, G. W.; Schoenknecht, F. D. Neonatal Escherichia coli septicemia-Bacterial counts in blood J. Pediatr. 1974, 85 (1) 128-30
69. Wain, J.; Diep, T. S.; Ho, V. A.; Walsh, A. M.; Nguyen, T. T.; Parry, C. M.; White, N. J. Quantitation of bacteria in blood of typhoid fever patients and relationship between counts and clinical features, transmissibility, and antibiotic resistance J Clin. Microbiol. 1998, 36 (6) 1683-7
70. Lukaszewski, R. A.; Yates, A. M.; Jackson, M. C.; Swingler, K.; Scherer, J. M.; Simpson, A. J.; Sadler, P.; McQuillan, P.; Titball, R. W.; Brooks, T. J.; Pearce, M. J. Presymptomatic prediction of sepsis in intensive care unit patients Clin. Vaccine Immunol. 2008, 15 (7) 1089-94
71. Shumaker-Parry, J. S.; Aebersold, R.; Campbell, C. T. Parallel, quantitative measurement of protein binding to a 120-element double-stranded DNA array in real time using surface plasmon resonance microscopy Anal. Chem. 2004, 76 (7) 2071-2082
72. Dostálek, J.; Homola, J. Surface plasmon resonance sensor based on an array of diffraction gratings for highly parallelized observation of biomolecular interactions Sens. Actuators, B 2008, 129 (1) 303-310
73. Mazumdar, S. D.; Barlen, B.; Kämpfer, P.; Keusgen, M. Surface plasmon resonance (SPR) as a rapid tool for serotyping of Salmonella Biosens. Bioelectron. 2010, 25 (5) 967-971
74. Wahman, D. G.; Schrantz, K. A.; Pressman, J. G. Determination of the effects of medium composition on the monochloramine disinfection kinetics of Nitrosomonas europaea by the propidium monoazide quantitative PCR and Live/Dead BacLight methods Appl. Environ. Microbiol. 2010, 76 (24) 8277-80
75. Bae, S.; Wuertz, S. Discrimination of viable and dead fecal Bacteroidales bacteria by quantitative PCR with propidium monoazide Appl. Environ. Microbiol. 2009, 75 (9) 2940-4
76. Nocker, A.; Sossa, K. E.; Camper, A. K. Molecular monitoring of disinfection efficacy using propidium monoazide in combination with quantitative PCR J. Microbiol. Methods 2007, 70 (2) 252-60
77. Nocker, A.; Mazza, A.; Masson, L.; Camper, A. K.; Brousseau, R. Selective detection of live bacteria combining propidium monoazide sample treatment with microarray technology J. Microbiol. Methods 2009, 76 (3) 253-61
78. Nocker, A.; Camper, A. K. Novel approaches toward preferential detection of viable cells using nucleic acid amplification techniques FEMS Microbiol. Lett. 2009, 291 (2) 137-42
79. Vesper, S.; McKinstry, C.; Hartmann, C.; Neace, M.; Yoder, S.; Vesper, A. Quantifying fungal viability in air and water samples using quantitative PCR after treatment with propidium monoazide (PMA) J. Microbiol. Methods 2008, 72 (2) 180-4
80. Parshionikar, S.; Laseke, I.; Fout, G. S. Use of propidium monoazide in reverse transcriptase PCR to distinguish between infectious and noninfectious enteric viruses in water samples Appl. Environ. Microbiol. 2010, 76 (13) 4318-26
81. Johnson-White, B.; Lin, B.; Ligler, F. S. Combination of immunosensor detection with viability testing and confirmation using the polymerase chain reaction and culture Anal. Chem. 2006, 79 (1) 140-146