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Volumn 2, Issue 4, 2011, Pages 601-609

Techniques for following the movement of single RNAs in living cells

Author keywords

[No Author keywords available]

Indexed keywords

BETA GALACTOSIDASE; FLUORESCENT DYE; MS2 GREEN FLUORESCENT FUSION PROTEIN; NUCLEOPLASMIN; RNA; STREPTOLYSIN O; UNCLASSIFIED DRUG; GREEN FLUORESCENT PROTEIN; HYBRID PROTEIN;

EID: 84855291135     PISSN: 17577004     EISSN: 17577012     Source Type: Journal    
DOI: 10.1002/wrna.83     Document Type: Review
Times cited : (15)

References (67)
  • 1
    • 0020995855 scopus 로고
    • The location of Ultrabithorax transcripts in Drosophila tissue sections.
    • Akam ME. The location of Ultrabithorax transcripts in Drosophila tissue sections. EMBO J 1983, 2: 2075-2084.
    • (1983) EMBO J , vol.2 , pp. 2075-2084
    • Akam, M.E.1
  • 2
    • 0022497718 scopus 로고
    • Intracellular localization of messenger RNAs for cytoskeletal proteins.
    • Lawrence JB, Singer RH. Intracellular localization of messenger RNAs for cytoskeletal proteins. Cell 1986, 45:407-415.
    • (1986) Cell , vol.45 , pp. 407-415
    • Lawrence, J.B.1    Singer, R.H.2
  • 3
    • 0042671348 scopus 로고    scopus 로고
    • Fluorescence in situ hybridization: past, present and future.
    • Levsky JM, Singer RH. Fluorescence in situ hybridization: past, present and future. J Cell Sci 2003, 116:2833-2838.
    • (2003) J Cell Sci , vol.116 , pp. 2833-2838
    • Levsky, J.M.1    Singer, R.H.2
  • 6
    • 0038376482 scopus 로고    scopus 로고
    • Live imaging of endogenous RNA reveals a diffusion and entrapment mechanism for nanos mRNA localization in Drosophila.
    • Forrest KM, Gavis ER. Live imaging of endogenous RNA reveals a diffusion and entrapment mechanism for nanos mRNA localization in Drosophila. Curr Biol 2003, 13:1159-1168.
    • (2003) Curr Biol , vol.13 , pp. 1159-1168
    • Forrest, K.M.1    Gavis, E.R.2
  • 9
    • 0034257926 scopus 로고    scopus 로고
    • CaMKIIα 3' untranslated region-directed mRNA translocation in living neurons: visualization by GFP linkage.
    • Rook MS, Lu M, Kosik KS. CaMKIIα 3' untranslated region-directed mRNA translocation in living neurons: visualization by GFP linkage. J Neurosci 2000, 20:6385-6393.
    • (2000) J Neurosci , vol.20 , pp. 6385-6393
    • Rook, M.S.1    Lu, M.2    Kosik, K.S.3
  • 10
    • 0030454007 scopus 로고    scopus 로고
    • Mutagenesis of a stacking contact in the MS2 coat protein-RNA complex.
    • LeCuyer KA, Behlen LS, Uhlenbeck OC. Mutagenesis of a stacking contact in the MS2 coat protein-RNA complex. EMBO J 1996, 15:6847-6853.
    • (1996) EMBO J , vol.15 , pp. 6847-6853
    • LeCuyer, K.A.1    Behlen, L.S.2    Uhlenbeck, O.C.3
  • 12
    • 0034544815 scopus 로고    scopus 로고
    • Pre-mRNA processing factors are required for nuclear export.
    • Brodsky AS, Silver PA. Pre-mRNA processing factors are required for nuclear export. RNA 2000, 6:1737-1749.
    • (2000) RNA , vol.6 , pp. 1737-1749
    • Brodsky, A.S.1    Silver, P.A.2
  • 13
    • 0034625003 scopus 로고    scopus 로고
    • The myosin motor, Myo4p, binds Ash1 mRNA via the adapter protein, She3p.
    • Takizawa PA, Vale RD. The myosin motor, Myo4p, binds Ash1 mRNA via the adapter protein, She3p. Proc Natl Acad Sci U S A 2000, 97:5273-5278.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 5273-5278
    • Takizawa, P.A.1    Vale, R.D.2
  • 14
    • 34547637607 scopus 로고    scopus 로고
    • LambdaN-GFP: an RNA reporter system for live-cell imaging.
    • Daigle N, Ellenberg J. LambdaN-GFP: an RNA reporter system for live-cell imaging. Nat Methods 2007, 4:633-636.
    • (2007) Nat Methods , vol.4 , pp. 633-636
    • Daigle, N.1    Ellenberg, J.2
  • 17
    • 34250219568 scopus 로고    scopus 로고
    • A genomic integration method to visualize localization of endogenous mRNAs in living yeast.
    • Haim L, Zipor G, Aronov S, Gerst JE. A genomic integration method to visualize localization of endogenous mRNAs in living yeast. Nat Methods 2007, 4:409-412.
    • (2007) Nat Methods , vol.4 , pp. 409-412
    • Haim, L.1    Zipor, G.2    Aronov, S.3    Gerst, J.E.4
  • 18
    • 0036241055 scopus 로고    scopus 로고
    • Visualization of interactions among bZIP and Rel family proteins in living cells using bimolecular fluorescence complementation.
    • Hu CD, Chinenov Y, Kerppola TK. Visualization of interactions among bZIP and Rel family proteins in living cells using bimolecular fluorescence complementation. Mol Cell 2002, 9:789-798.
    • (2002) Mol Cell , vol.9 , pp. 789-798
    • Hu, C.D.1    Chinenov, Y.2    Kerppola, T.K.3
  • 19
    • 11844252081 scopus 로고    scopus 로고
    • Detecting protein-protein interactions with a green fluorescent protein fragment reassembly trap: scope and mechanism.
    • Magliery TJ, Wilson CG, Pan W, Mishler D, Ghosh I, Hamilton AD, Regan L. Detecting protein-protein interactions with a green fluorescent protein fragment reassembly trap: scope and mechanism. J Am Chem Soc 2005, 127:146-157.
    • (2005) J Am Chem Soc , vol.127 , pp. 146-157
    • Magliery, T.J.1    Wilson, C.G.2    Pan, W.3    Mishler, D.4    Ghosh, I.5    Hamilton, A.D.6    Regan, L.7
  • 20
    • 4444285375 scopus 로고    scopus 로고
    • Visualization of RNA-protein interactions in living cells: FMRP and IMP1 interact on mRNAs.
    • Rackham O, Brown CM. Visualization of RNA-protein interactions in living cells: FMRP and IMP1 interact on mRNAs. EMBO J 2004, 23:3346-3355.
    • (2004) EMBO J , vol.23 , pp. 3346-3355
    • Rackham, O.1    Brown, C.M.2
  • 21
    • 34250210525 scopus 로고    scopus 로고
    • Imaging dynamics of endogenous mitochondrial RNA in single living cells.
    • Ozawa T, Natori Y, Sato M, Umezawa Y. Imaging dynamics of endogenous mitochondrial RNA in single living cells. Nat Methods 2007, 4:413-419.
    • (2007) Nat Methods , vol.4 , pp. 413-419
    • Ozawa, T.1    Natori, Y.2    Sato, M.3    Umezawa, Y.4
  • 22
    • 34250191761 scopus 로고    scopus 로고
    • RNA visualization in live bacterial cells using fluorescent protein complementation.
    • Valencia-Burton M, McCullough RM, Cantor CR, Broude NE. RNA visualization in live bacterial cells using fluorescent protein complementation. Nat Methods 2007, 4:421-427.
    • (2007) Nat Methods , vol.4 , pp. 421-427
    • Valencia-Burton, M.1    McCullough, R.M.2    Cantor, C.R.3    Broude, N.E.4
  • 23
    • 0037378193 scopus 로고    scopus 로고
    • RNA aptamers to initiation factor 4A helicase hinder cap-dependent translation by blocking ATP hydrolysis.
    • Oguro A, Ohtsu T, Svitkin YV, Sonenberg N, Nakamura Y. RNA aptamers to initiation factor 4A helicase hinder cap-dependent translation by blocking ATP hydrolysis. RNA 2003, 9:394-407.
    • (2003) RNA , vol.9 , pp. 394-407
    • Oguro, A.1    Ohtsu, T.2    Svitkin, Y.V.3    Sonenberg, N.4    Nakamura, Y.5
  • 26
    • 33747409084 scopus 로고    scopus 로고
    • Molecular beacons: Fluorescent probes for detection of endogenous mRNAs in living cells.
    • Bratu DP. Molecular beacons: Fluorescent probes for detection of endogenous mRNAs in living cells. Methods Mol Biol 2006, 319:1-14.
    • (2006) Methods Mol Biol , vol.319 , pp. 1-14
    • Bratu, D.P.1
  • 27
    • 0029670262 scopus 로고    scopus 로고
    • Molecular beacons: probes that fluoresce upon hybridization.
    • Tyagi S, Kramer FR. Molecular beacons: probes that fluoresce upon hybridization. Nat Biotechnol 1996, 14:303-308.
    • (1996) Nat Biotechnol , vol.14 , pp. 303-308
    • Tyagi, S.1    Kramer, F.R.2
  • 29
    • 24344438726 scopus 로고    scopus 로고
    • Potential structural role of non-coding and coding RNAs in the organization of the cytoskeleton at the vegetal cortex of Xenopus oocytes.
    • Kloc M, Wilk K, Vargas D, Shirato Y, Bilinski S, Etkin LD. Potential structural role of non-coding and coding RNAs in the organization of the cytoskeleton at the vegetal cortex of Xenopus oocytes. Development 2005, 132:3445-3457.
    • (2005) Development , vol.132 , pp. 3445-3457
    • Kloc, M.1    Wilk, K.2    Vargas, D.3    Shirato, Y.4    Bilinski, S.5    Etkin, L.D.6
  • 30
    • 10044298658 scopus 로고    scopus 로고
    • Imaging native β-actin mRNA in motile fibroblasts.
    • Tyagi S, Alsmadi O. Imaging native β-actin mRNA in motile fibroblasts. Biophys J 2004, 87:4153-4162.
    • (2004) Biophys J , vol.87 , pp. 4153-4162
    • Tyagi, S.1    Alsmadi, O.2
  • 32
    • 0034130498 scopus 로고    scopus 로고
    • Direct observation of specific messenger RNA in a single living cell under a fluorescence microscope.
    • Tsuji A, Koshimoto H, Sato Y, Hirano M, Sei-Iida Y, Kondo S, Ishibashi K. Direct observation of specific messenger RNA in a single living cell under a fluorescence microscope. Biophys J 2000, 78:3260-3274.
    • (2000) Biophys J , vol.78 , pp. 3260-3274
    • Tsuji, A.1    Koshimoto, H.2    Sato, Y.3    Hirano, M.4    Sei-Iida, Y.5    Kondo, S.6    Ishibashi, K.7
  • 34
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction.
    • Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 2003, 31:3406-3415.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 35
    • 0024041180 scopus 로고
    • Role of RNase H in hybrid-arrested translation by antisense oligonucleotides.
    • Walder RY, Walder JA. Role of RNase H in hybrid-arrested translation by antisense oligonucleotides. Proc Natl Acad Sci U S A 1988, 85:5011-5015.
    • (1988) Proc Natl Acad Sci U S A , vol.85 , pp. 5011-5015
    • Walder, R.Y.1    Walder, J.A.2
  • 36
    • 28844454642 scopus 로고    scopus 로고
    • Arginine-rich cell penetrating peptides: from endosomal uptake to nuclear delivery.
    • Melikov K, Chernomordik LV. Arginine-rich cell penetrating peptides: from endosomal uptake to nuclear delivery. Cell Mol Life Sci 2005, 62:2739-2749.
    • (2005) Cell Mol Life Sci , vol.62 , pp. 2739-2749
    • Melikov, K.1    Chernomordik, L.V.2
  • 37
    • 3843054927 scopus 로고    scopus 로고
    • Peptide-linked molecular beacons for efficient delivery and rapid mRNA detection in living cells.
    • Nitin N, Santangelo PJ, Kim G, Nie S, Bao G. Peptide-linked molecular beacons for efficient delivery and rapid mRNA detection in living cells. Nucleic Acids Res 2004, 32:e58.
    • (2004) Nucleic Acids Res , vol.32
    • Nitin, N.1    Santangelo, P.J.2    Kim, G.3    Nie, S.4    Bao, G.5
  • 38
    • 56249091780 scopus 로고    scopus 로고
    • Visualizing the dynamics of viral replication in living cells via Tat peptide delivery of nuclease-resistant molecular beacons.
    • Yeh HY, Yates MV, Mulchandani A, Chen W. Visualizing the dynamics of viral replication in living cells via Tat peptide delivery of nuclease-resistant molecular beacons. Proc Natl Acad Sci U S A 2008, 105: 17522-17525.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 17522-17525
    • Yeh, H.Y.1    Yates, M.V.2    Mulchandani, A.3    Chen, W.4
  • 39
    • 0028264303 scopus 로고
    • Intracellular oligonucleotide hybridization detected by fluorescence resonance energy transfer (FRET).
    • Sixou S, Szoka FC Jr, Green GA, Giusti B, Zon G, Chin DJ. Intracellular oligonucleotide hybridization detected by fluorescence resonance energy transfer (FRET). Nucleic Acids Res 1994, 22:662-668.
    • (1994) Nucleic Acids Res , vol.22 , pp. 662-668
    • Sixou, S.1    Szoka, F.C.2    Green, G.A.3    Giusti, B.4    Zon, G.5    Chin, D.J.6
  • 40
    • 17144392600 scopus 로고    scopus 로고
    • tRNA-linked molecular beacons for imaging mRNAs in the cytoplasm of living cells.
    • Mhlanga MM, Vargas DY, Fung CW, Kramer FR, Tyagi S. tRNA-linked molecular beacons for imaging mRNAs in the cytoplasm of living cells. Nucleic Acids Res 2005, 33:1902-1912.
    • (2005) Nucleic Acids Res , vol.33 , pp. 1902-1912
    • Mhlanga, M.M.1    Vargas, D.Y.2    Fung, C.W.3    Kramer, F.R.4    Tyagi, S.5
  • 41
    • 47249136607 scopus 로고    scopus 로고
    • Efficient cytosolic delivery of molecular beacon conjugates and flow cytometric analysis of target RNA.
    • Chen AK, Behlke MA, Tsourkas A. Efficient cytosolic delivery of molecular beacon conjugates and flow cytometric analysis of target RNA. Nucleic Acids Res 2008, 36:e69.
    • (2008) Nucleic Acids Res , vol.36
    • Chen, A.K.1    Behlke, M.A.2    Tsourkas, A.3
  • 46
    • 51449102130 scopus 로고    scopus 로고
    • Multiple kinesin motors coordinate cytoplasmic RNA transport on a subpopulation of microtubules in Xenopus oocytes.
    • Messitt TJ, Gagnon JA, Kreiling JA, Pratt CA, Yoon YJ, Mowry KL. Multiple kinesin motors coordinate cytoplasmic RNA transport on a subpopulation of microtubules in Xenopus oocytes. Dev Cell 2008, 15:426-436.
    • (2008) Dev Cell , vol.15 , pp. 426-436
    • Messitt, T.J.1    Gagnon, J.A.2    Kreiling, J.A.3    Pratt, C.A.4    Yoon, Y.J.5    Mowry, K.L.6
  • 47
    • 0035917422 scopus 로고    scopus 로고
    • Drosophila wingless and pair-rule transcripts localize apically by dynein-mediated transport of RNA particles.
    • Wilkie GS, Davis I. Drosophila wingless and pair-rule transcripts localize apically by dynein-mediated transport of RNA particles. Cell 2001, 105:209-219.
    • (2001) Cell , vol.105 , pp. 209-219
    • Wilkie, G.S.1    Davis, I.2
  • 50
    • 0033168491 scopus 로고    scopus 로고
    • Use of caged fluorochromes to track macromolecular movement in living cells.
    • Politz JC. Use of caged fluorochromes to track macromolecular movement in living cells. Trends Cell Biol 1999, 9:284-287.
    • (1999) Trends Cell Biol , vol.9 , pp. 284-287
    • Politz, J.C.1
  • 51
    • 0344875510 scopus 로고    scopus 로고
    • Diffusion-based transport of nascent ribosomes in the nucleus.
    • Politz JC, Tuft RA, Pederson T. Diffusion-based transport of nascent ribosomes in the nucleus. Mol Biol Cell 2003, 14:4805-4812.
    • (2003) Mol Biol Cell , vol.14 , pp. 4805-4812
    • Politz, J.C.1    Tuft, R.A.2    Pederson, T.3
  • 52
    • 0033602460 scopus 로고    scopus 로고
    • Movement of nuclear poly(A) RNA throughout the interchromatin space in living cells.
    • Politz JC, Tuft RA, Pederson T, Singer RH. Movement of nuclear poly(A) RNA throughout the interchromatin space in living cells. Curr Biol 1999, 9:285-291.
    • (1999) Curr Biol , vol.9 , pp. 285-291
    • Politz, J.C.1    Tuft, R.A.2    Pederson, T.3    Singer, R.H.4
  • 54
    • 34248656482 scopus 로고    scopus 로고
    • Quantitative analysis of digital microscope images.
    • Wolf D, Samarasekera C, Swedlow JR. Quantitative analysis of digital microscope images. Meth Cell Biol 2007, 81:365-396.
    • (2007) Meth Cell Biol , vol.81 , pp. 365-396
    • Wolf, D.1    Samarasekera, C.2    Swedlow, J.R.3
  • 55
    • 61649121490 scopus 로고    scopus 로고
    • Single molecule tracking of quantum dot-labeled mRNAs in a cell nucleus.
    • Ishihama Y, Funatsu T. Single molecule tracking of quantum dot-labeled mRNAs in a cell nucleus. Biochem Biophys Res Commun 2009, 381:33-38.
    • (2009) Biochem Biophys Res Commun , vol.381 , pp. 33-38
    • Ishihama, Y.1    Funatsu, T.2
  • 56
    • 0346725932 scopus 로고    scopus 로고
    • The use of nanocrystals in biological detection.
    • Alivisatos P. The use of nanocrystals in biological detection. Nat Biotechnol 2004, 22:47-52.
    • (2004) Nat Biotechnol , vol.22 , pp. 47-52
    • Alivisatos, P.1
  • 57
    • 0012392952 scopus 로고    scopus 로고
    • Semiconductor nanocrystals as fluorescent biological labels.
    • Bruchez M Jr, Moronne M, Gin P, Weiss S, Alivisatos AP. Semiconductor nanocrystals as fluorescent biological labels. Science 1998, 281:2013-2016.
    • (1998) Science , vol.281 , pp. 2013-2016
    • Bruchez, M.1    Moronne, M.2    Gin, P.3    Weiss, S.4    Alivisatos, A.P.5
  • 58
    • 0036220117 scopus 로고    scopus 로고
    • Molecular brightness characterization of EGFP in vivo by fluorescence fluctuation spectroscopy.
    • Chen Y, Muller JD, Ruan Q, Gratton E. Molecular brightness characterization of EGFP in vivo by fluorescence fluctuation spectroscopy. Biophys J 2002, 82:133-144.
    • (2002) Biophys J , vol.82 , pp. 133-144
    • Chen, Y.1    Muller, J.D.2    Ruan, Q.3    Gratton, E.4
  • 59
    • 0344430112 scopus 로고    scopus 로고
    • Aptamers switch on fluorescence of triphenylmethane dyes.
    • Babendure JR, Adams SR, Tsien RY. Aptamers switch on fluorescence of triphenylmethane dyes. J Am Chem Soc 2003, 125:14716-14717.
    • (2003) J Am Chem Soc , vol.125 , pp. 14716-14717
    • Babendure, J.R.1    Adams, S.R.2    Tsien, R.Y.3
  • 61
    • 71849083574 scopus 로고    scopus 로고
    • Cellular dynamics of tRNAs and their genes.
    • Hopper AK, Pai DA, Engelke DR. Cellular dynamics of tRNAs and their genes. FEBS Lett 2010, 584:310-317.
    • (2010) FEBS Lett , vol.584 , pp. 310-317
    • Hopper, A.K.1    Pai, D.A.2    Engelke, D.R.3
  • 62
    • 39949083202 scopus 로고    scopus 로고
    • A decade of surprises for tRNA nuclear-cytoplasmic dynamics.
    • Hopper AK, Shaheen HH. A decade of surprises for tRNA nuclear-cytoplasmic dynamics. Trends Cell Biol 2008, 18:98-104.
    • (2008) Trends Cell Biol , vol.18 , pp. 98-104
    • Hopper, A.K.1    Shaheen, H.H.2
  • 64
    • 77953658619 scopus 로고    scopus 로고
    • Molecular beacons and related probes for intracellular RNA imaging.
    • Santangelo P. Molecular beacons and related probes for intracellular RNA imaging. WIREs Nanomed Nanobiotechnol 2010, 2:11-19.
    • (2010) WIREs Nanomed Nanobiotechnol , vol.2 , pp. 11-19
    • Santangelo, P.1
  • 65
    • 0036823318 scopus 로고    scopus 로고
    • Live cell imaging using wide-field microscopy and deconvolution.
    • Swedlow JR, Platani M. Live cell imaging using wide-field microscopy and deconvolution. Cell Struct Funct 2002, 27:225-341.
    • (2002) Cell Struct Funct , vol.27 , pp. 225-341
    • Swedlow, J.R.1    Platani, M.2
  • 66
    • 65449131152 scopus 로고    scopus 로고
    • Imaging intracellular RNA distribution and dynamics in living cells.
    • Tyagi S. Imaging intracellular RNA distribution and dynamics in living cells. Nat Methods 2009, 6:331-338.
    • (2009) Nat Methods , vol.6 , pp. 331-338
    • Tyagi, S.1
  • 67
    • 77955953680 scopus 로고    scopus 로고
    • Making the message clear: visualizing mRNA localization.
    • Weil TT, Parton RM, Davis I. Making the message clear: visualizing mRNA localization. Trends Cell Biol 2010, 20:380-390.
    • (2010) Trends Cell Biol , vol.20 , pp. 380-390
    • Weil, T.T.1    Parton, R.M.2    Davis, I.3


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