메뉴 건너뛰기




Volumn 108, Issue 50, 2011, Pages 20265-20270

Scaffold number in yeast signaling system sets tradeoff between system output and dynamic range

Author keywords

Genetic algorithmic model optimization; Quantitative immunoblotting; Single cell fluorescence quantification

Indexed keywords

GUANINE NUCLEOTIDE BINDING PROTEIN; HYBRID PROTEIN; MITOGEN ACTIVATED PROTEIN KINASE; PHEROMONE; SCAFFOLD PROTEIN;

EID: 84155179185     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1004042108     Document Type: Article
Times cited : (50)

References (48)
  • 1
    • 0034923514 scopus 로고    scopus 로고
    • Regulation of G protein - Initiated signal transduction in yeast: Paradigms and principles
    • DOI 10.1146/annurev.biochem.70.1.703
    • Dohlman HG, Thorner JW (2001) Regulation of G protein-initiated signal transduction in yeast: Paradigms and principles. Annu Rev Biochem 70:703-754. (Pubitemid 32662223)
    • (2001) Annual Review of Biochemistry , vol.70 , pp. 703-754
    • Dohlman, H.G.1    Thorner, J.W.2
  • 3
    • 57649130757 scopus 로고    scopus 로고
    • Negative feedback that improves information transmission in yeast signalling
    • Yu RC, et al. (2008) Negative feedback that improves information transmission in yeast signalling. Nature 456:755-761.
    • (2008) Nature , vol.456 , pp. 755-761
    • Yu, R.C.1
  • 4
    • 0025101239 scopus 로고
    • FUS3 encodes a cdc2+/CDC28-related kinase required for the transition from mitosis into conjugation
    • Elion EA, Grisafi PL, Fink GR (1990) FUS3 encodes a cdc2+/CDC28-related kinase required for the transition from mitosis into conjugation. Cell 60:649-664.
    • (1990) Cell , vol.60 , pp. 649-664
    • Elion, E.A.1    Grisafi, P.L.2    Fink, G.R.3
  • 6
    • 0034705227 scopus 로고    scopus 로고
    • Scaffold proteins
    • may biphasically affect the levels of mitogen-activated protein kinase signaling and reduce its threshold properties.
    • Levchenko A, Bruck J, Sternberg PW (2000) Scaffold proteins may biphasically affect the levels of mitogen-activated protein kinase signaling and reduce its threshold properties. Proc Natl Acad Sci USA 97:5818-5823.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 5818-5823
    • Levchenko, A.1    Bruck, J.2    Sternberg, P.W.3
  • 7
    • 73149111973 scopus 로고    scopus 로고
    • Quantitative effect of scaffold abundance on signal propagation
    • Chapman SA, Asthagiri AR (2009) Quantitative effect of scaffold abundance on signal propagation. Mol Syst Biol 5:313.
    • (2009) Mol Syst Biol , vol.5 , pp. 313
    • Chapman, S.A.1    Asthagiri, A.R.2
  • 8
    • 0032959886 scopus 로고    scopus 로고
    • Identification of constitutive and Ras-inducible phosphorylation sites of KSR: Implications for 14-3-3 binding, mitogen-activated protein kinase binding, and KSR overexpression
    • Cacace AM, et al. (1999) Identification of constitutive and ras-inducible phosphorylation sites of KSR: Implications for 14-3-3 binding, mitogen-activated protein kinase binding, and KSR overexpression. Mol Cell Biol 19:229-240. (Pubitemid 29018425)
    • (1999) Molecular and Cellular Biology , vol.19 , Issue.1 , pp. 229-240
    • Cacace, A.M.1    Michaud, N.R.2    Therrien, M.3    Mathes, K.4    Copeland, T.5    Rubin, G.M.6    Morrison, D.K.7
  • 10
    • 0344012556 scopus 로고    scopus 로고
    • Regulators of G protein signaling and transient activation of signaling: Experimental and computational analysis reveals negative and positive feedback controls on G protein activity
    • DOI 10.1074/jbc.M308432200
    • Hao N, Yildirim N, Wang Y, Elston TC, Dohlman HG (2003) Regulators of G protein signaling and transient activation of signaling: Experimental and computational analysis reveals negative and positive feedback controls on G protein activity. J Biol Chem 278:46506-46515. (Pubitemid 37452223)
    • (2003) Journal of Biological Chemistry , vol.278 , Issue.47 , pp. 46506-46515
    • Hao, N.1    Yildirim, N.2    Wang, Y.3    Elston, T.C.4    Dohlman, H.G.5
  • 11
    • 35748968807 scopus 로고    scopus 로고
    • Spatial regulation of Fus3 MAP kinase activity through a reaction-diffusion mechanism in yeast pheromone signalling
    • DOI 10.1038/ncb1652, PII NCB1652
    • Maeder CI, et al. (2007) Spatial regulation of Fus3 MAP kinase activity through a reaction-diffusion mechanism in yeast pheromone signalling. Nat Cell Biol 9:1319-1326. (Pubitemid 350042364)
    • (2007) Nature Cell Biology , vol.9 , Issue.11 , pp. 1319-1326
    • Maeder, C.I.1    Hink, M.A.2    Kinkhabwala, A.3    Mayr, R.4    Bastiaens, P.I.H.5    Knop, M.6
  • 12
    • 38049181017 scopus 로고    scopus 로고
    • Mapping dynamic protein interactions in MAP kinase signaling using live-cell fluorescence fluctuation spectroscopy and imaging
    • Slaughter BD, Schwartz JW, Li R (2007) Mapping dynamic protein interactions in MAP kinase signaling using live-cell fluorescence fluctuation spectroscopy and imaging. Proc Natl Acad Sci USA 104:20320-20325.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 20320-20325
    • Slaughter, B.D.1    Schwartz, J.W.2    Li, R.3
  • 13
    • 0029992810 scopus 로고    scopus 로고
    • Signaling in the yeast pheromone response pathway: Specific and high-affinity interaction of the mitogen-activated protein (MAP) kinases Kss1 and Fus3 with the upstream MAP kinase kinase Ste7
    • Bardwell L, Cook JG, Chang EC, Cairns BR, Thorner J (1996) Signaling in the yeast pheromone response pathway: Specific and high-affinity interaction of the mitogen-activated protein (MAP) kinases Kss1 and Fus3 with the upstream MAP kinase kinase Ste7. Mol Cell Biol 16:3637-3650.
    • (1996) Mol Cell Biol , vol.16 , pp. 3637-3650
    • Bardwell, L.1    Cook, J.G.2    Chang, E.C.3    Cairns, B.R.4    Thorner, J.5
  • 14
    • 0028286250 scopus 로고
    • Systematic mutagenesis of the yeast mating pheromone receptor third intracellular loop
    • Clark CD, Palzkill T, Botstein D (1994) Systematic mutagenesis of the yeast mating pheromone receptor third intracellular loop. J Biol Chem 269:8831-8841. (Pubitemid 24209195)
    • (1994) Journal of Biological Chemistry , vol.269 , Issue.12 , pp. 8831-8841
    • Clark, C.D.1    Palzkill, T.2    Botstein, D.3
  • 15
    • 0024297275 scopus 로고
    • Peptide analogues compete with the binding of alpha-factor to its receptor in Saccharomyces cerevisiae
    • Raths SK, Naider F, Becker JM (1988) Peptide analogues compete with the binding of alpha-factor to its receptor in Saccharomyces cerevisiae. J Biol Chem 263:17333-17341.
    • (1988) J Biol Chem , vol.263 , pp. 17333-17341
    • Raths, S.K.1    Naider, F.2    Becker, J.M.3
  • 16
    • 26844562643 scopus 로고    scopus 로고
    • Counting cytokinesis proteins globally and locally in fission yeast
    • Wu JQ, Pollard TD (2005) Counting cytokinesis proteins globally and locally in fission yeast. Science 310:310-314.
    • (2005) Science , vol.310 , pp. 310-314
    • Wu, J.Q.1    Pollard, T.D.2
  • 19
    • 0033818956 scopus 로고    scopus 로고
    • Multiplex detection and quantitation of proteins on western blots using fluorescent probes
    • Gingrich JC, Davis DR, Nguyen Q (2000) Multiplex detection and quantitation of proteins on western blots using fluorescent probes. Biotechniques 29:636-642.
    • (2000) Biotechniques , vol.29 , pp. 636-642
    • Gingrich, J.C.1    Davis, D.R.2    Nguyen, Q.3
  • 20
    • 33751261134 scopus 로고    scopus 로고
    • Mechanisms of MAPK signalling specificity
    • Bardwell L (2006) Mechanisms of MAPK signalling specificity. Biochem Soc Trans 34:837-841.
    • (2006) Biochem Soc Trans , vol.34 , pp. 837-841
    • Bardwell, L.1
  • 21
    • 0034669189 scopus 로고    scopus 로고
    • Nuclear-specific degradation of Far1 is controlled by the localization of the F-box protein Cdc4
    • Blondel M, et al. (2000) Nuclear-specific degradation of Far1 is controlled by the localization of the F-box protein Cdc4. EMBO J 19:6085-6097.
    • (2000) EMBO J , vol.19 , pp. 6085-6097
    • Blondel, M.1
  • 23
    • 33947355325 scopus 로고    scopus 로고
    • Single-cell quantification of molecules and rates using open-source microscope-based cytometry
    • DOI 10.1038/nmeth1008, PII NMETH1008
    • Gordon A, et al. (2007) Single-cell quantification of molecules and rates using open-source microscope-based cytometry. Nat Methods 4:175-181. (Pubitemid 46454687)
    • (2007) Nature Methods , vol.4 , Issue.2 , pp. 175-181
    • Gordon, A.1    Colman-Lerner, A.2    Chin, T.E.3    Benjamin, K.R.4    Yu, R.C.5    Brent, R.6
  • 24
    • 33745220278 scopus 로고    scopus 로고
    • Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise
    • Newman JR, et al. (2006) Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise. Nature 441:840-846.
    • (2006) Nature , vol.441 , pp. 840-846
    • Newman, J.R.1
  • 27
    • 10244219918 scopus 로고    scopus 로고
    • BioNetGen: Software for rule-based modeling of signal transduction based on the interactions of molecular domains
    • DOI 10.1093/bioinformatics/bth378
    • Blinov ML, Faeder JR, Goldstein B, Hlavacek WS (2004) BioNetGen: Software for rule-based modeling of signal transduction based on the interactions of molecular domains. Bioinformatics 20:3289-3291. (Pubitemid 39619231)
    • (2004) Bioinformatics , vol.20 , Issue.17 , pp. 3289-3291
    • Blinov, M.L.1    Faeder, J.R.2    Goldstein, B.3    Hlavacek, W.S.4
  • 29
    • 4444272353 scopus 로고    scopus 로고
    • Modelling the dynamics of the yeast pheromone pathway
    • DOI 10.1002/yea.1122
    • Kofahl B, Klipp E (2004) Modelling the dynamics of the yeast pheromone pathway. Yeast 21:831-850. (Pubitemid 39162579)
    • (2004) Yeast , vol.21 , Issue.10 , pp. 831-850
    • Kofahl, B.1    Klipp, E.2
  • 30
    • 33845355415 scopus 로고    scopus 로고
    • Dynamic studies of scaffold-dependent mating pathway in yeast
    • DOI 10.1529/biophysj.106.081661
    • Shao D, Zheng W, Qiu W, Ouyang Q, Tang C (2006) Dynamic studies of scaffold-dependent mating pathway in yeast. Biophys J 91:3986-4001. (Pubitemid 44887259)
    • (2006) Biophysical Journal , vol.91 , Issue.11 , pp. 3986-4001
    • Shao, D.1    Zheng, W.2    Qiu, W.3    Ouyang, Q.4    Tang, C.5
  • 31
    • 55249115064 scopus 로고    scopus 로고
    • Oscillatory phosphorylation of yeast Fus3 MAP kinase controls periodic gene expression and morphogenesis
    • Hilioti Z, et al. (2008) Oscillatory phosphorylation of yeast Fus3 MAP kinase controls periodic gene expression and morphogenesis. Curr Biol 18:1700-1706.
    • (2008) Curr Biol , vol.18 , pp. 1700-1706
    • Hilioti, Z.1
  • 33
    • 0242574982 scopus 로고    scopus 로고
    • Parameter estimation in biochemical pathways: A comparison of global optimization methods
    • DOI 10.1101/gr.1262503
    • Moles CG, Mendes P, Banga JR (2003) Parameter estimation in biochemical pathways: A comparison of global optimization methods. Genome Res 13:2467-2474. (Pubitemid 37428271)
    • (2003) Genome Research , vol.13 , Issue.11 , pp. 2467-2474
    • Moles, C.G.1    Mendes, P.2    Banga, J.R.3
  • 34
    • 34248179139 scopus 로고    scopus 로고
    • The potential for signal integration and processing in interacting MAP kinase cascades
    • DOI 10.1016/j.jtbi.2006.12.035, PII S0022519306006035
    • Schwacke JH, Voit EO (2007) The potential for signal integration and processing in interacting MAP kinase cascades. J Theor Biol 246:604-620. (Pubitemid 46719256)
    • (2007) Journal of Theoretical Biology , vol.246 , Issue.4 , pp. 604-620
    • Schwacke, J.H.1    Voit, E.O.2
  • 35
    • 1642458095 scopus 로고    scopus 로고
    • A conserved protein interaction network involving the yeast MAP kinases Fus3 and Kss1
    • DOI 10.1083/jcb.200310021
    • Kusari AB, Molina DM, Sabbagh W, Jr., Lau CS, Bardwell L (2004) A conserved protein interaction network involving the yeast MAP kinases Fus3 and Kss1. J Cell Biol 164:267-277. (Pubitemid 38133946)
    • (2004) Journal of Cell Biology , vol.164 , Issue.2 , pp. 267-277
    • Kusari, A.B.1    Molina, D.M.2    Sabbagh Jr., W.3    Lau, C.S.4    Bardwell, L.5
  • 37
    • 77954630771 scopus 로고    scopus 로고
    • Reagents for investigating MAPK signalling in model yeast species
    • Pincus D, Benjamin K, Burbulis I, Tsong AE, Resnekov O (2010) Reagents for investigating MAPK signalling in model yeast species. Yeast 27:423-430.
    • (2010) Yeast , vol.27 , pp. 423-430
    • Pincus, D.1    Benjamin, K.2    Burbulis, I.3    Tsong, A.E.4    Resnekov, O.5
  • 39
    • 0034009390 scopus 로고    scopus 로고
    • Signal transduction: Hanging on a scaffold
    • DOI 10.1016/S0955-0674(99)00078-2
    • Burack WR, Shaw AS (2000) Signal transduction: Hanging on a scaffold. Curr Opin Cell Biol 12:211-216. (Pubitemid 30142568)
    • (2000) Current Opinion in Cell Biology , vol.12 , Issue.2 , pp. 211-216
    • Burack, W.R.1    Shaw, A.S.2
  • 40
    • 4344706140 scopus 로고    scopus 로고
    • Mathematical modeling of RGS and G-protein regulation in yeast
    • DOI 10.1016/S0076-6879(04)89023-2, PII S0076687904890232
    • Yildirim N, Hao N, Dohlman HG, Elston TC (2004) Mathematical modeling of RGS and G-protein regulation in yeast. Methods Enzymol 389:383-398. (Pubitemid 39119080)
    • (2004) Methods in Enzymology , vol.389 , pp. 383-398
    • Yildirim, N.1    Hao, N.2    Dohlman, H.G.3    Elston, T.C.4
  • 41
    • 58249105893 scopus 로고    scopus 로고
    • Nucleus-specific and cell cycle-regulated degradation of mitogen-activated protein kinase scaffold protein Ste5 contributes to the control of signaling competence
    • Garrenton LS, et al. (2009) Nucleus-specific and cell cycle-regulated degradation of mitogen-activated protein kinase scaffold protein Ste5 contributes to the control of signaling competence. Mol Cell Biol 29:582-601.
    • (2009) Mol Cell Biol , vol.29 , pp. 582-601
    • Garrenton, L.S.1
  • 42
    • 0027191189 scopus 로고
    • FAR1 links the signal transduction pathway to the cell cycle machinery in yeast
    • Peter M, Gartner A, Horecka J, Ammerer G, Herskowitz I (1993) FAR1 links the signal transduction pathway to the cell cycle machinery in yeast. Cell 73:747-760.
    • (1993) Cell , vol.73 , pp. 747-760
    • Peter, M.1    Gartner, A.2    Horecka, J.3    Ammerer, G.4    Herskowitz, I.5
  • 43
    • 34248192358 scopus 로고    scopus 로고
    • Bread, beer and wine: Saccharomyces cerevisiae diversity reflects human history
    • DOI 10.1111/j.1365-294X.2007.03266.x
    • Legras JL, Merdinoglu D, Cornuet JM, Karst F (2007) Bread, beer and wine: Saccharomyces cerevisiae diversity reflects human history. Mol Ecol 16:2091-2102. (Pubitemid 46718913)
    • (2007) Molecular Ecology , vol.16 , Issue.10 , pp. 2091-2102
    • Legras, J.-L.1    Merdinoglu, D.2    Cornuet, J.-M.3    Karst, F.4
  • 44
    • 0024977417 scopus 로고
    • Elevated recombination rates in transcriptionally active DNA
    • Thomas BJ, Rothstein R (1989) Elevated recombination rates in transcriptionally active DNA. Cell 56:619-630.
    • (1989) Cell , vol.56 , pp. 619-630
    • Thomas, B.J.1    Rothstein, R.2
  • 46
    • 0031820288 scopus 로고    scopus 로고
    • Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae
    • DOI 10.1002/(SICI)1097-0061(199807)14:10<953::AID-YEA293>3.0.CO;2-U
    • Longtine MS, et al. (1998) Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast 14:953-961. (Pubitemid 28328001)
    • (1998) Yeast , vol.14 , Issue.10 , pp. 953-961
    • Longtine, M.S.1    McKenzie III, A.2    Demarini, D.J.3    Shah, N.G.4    Wach, A.5    Brachat, A.6    Philippsen, P.7    Pringle, J.R.8
  • 48
    • 0030815533 scopus 로고    scopus 로고
    • Ste5 RING-H2 domain: Role in Ste4-promoted oligomerization for yeast pheromone signaling
    • DOI 10.1126/science.278.5335.103
    • Inouye C, Dhillon N, Thorner J (1997) Ste5 RING-H2 domain: Role in Ste4-promoted oligomerization for yeast pheromone signaling. Science 278:103-106. (Pubitemid 27446285)
    • (1997) Science , vol.278 , Issue.5335 , pp. 103-106
    • Inouye, C.1    Dhillon, N.2    Thorner, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.