DNA barcoding of European Herbertus (Marchantiopsida, Herbertaceae) and the discovery and description of a new species

Molecular Ecology Resources

Volumn 12, Issue 1, 2012, Pages 36-47

  Bell, David ^a   Long, David G ^a   Forrest, Alan D ^a   Hollingsworth, Michelle L ^a   Blom, Hans H ^b   Hollingsworth, Peter M ^a  

^a ROYAL BOTANIC GARDEN EDINBURGH   (United Kingdom)

^b NORWEGIAN INSTITUTE OF BIOECONOMY RESEARCH   (Norway)

Author keywords

[No Author keywords available]

Indexed keywords

PLANT DNA;

ARTICLE; CLASSIFICATION; DNA BARCODING; EUROPE; GENETICS; HISTOLOGY; LIVERWORT; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLASTID;

DNA BARCODING, TAXONOMIC; DNA, PLANT; EUROPE; HEPATOPHYTA; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLASTIDS;

HERBERTACEAE; HERBERTUS; MARCHANTIOPSIDA;

EID: 83755165629     PISSN: 1755098X     EISSN: 17550998     Source Type: Journal    
DOI: 10.1111/j.1755-0998.2011.03053.x     Document Type: Article

References (41)

1. CBOL Plant Working Group (2009) A DNA barcode for land plants. Proceedings of the National Academy of Sciences, 106, 12794-12797.
2. Chase MW, Cowan RS, Hollingsworth PM et al. (2007) A proposal for a standardised protocol to barcode all land plants. Taxon, 56, 295-299.
3. Chen S, Yao H, Han J et al. (2010) Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species. Public Library of ScienceONE, 5, e8613.
4. Crundwell AC (1970) Herberta borealis, a new species from Scotland and Norway. Transactions of the British Bryological Society, 6, 41-49.
5. Damsholt K (2002) Illustrated Flora of Nordic Liverworts and Hornworts. Nordic Bryological Society, Lund.
6. Fazekas AJ, Burgess KS, Kesanakurti PR et al. (2008) Multiple multilocus DNA barcodes from the plastid genome discriminate plant species equally well. Public Library of Science, ONE, 3, e2802.
7. Feldberg K, Heinrichs J (2005) On the identity of Herbertus borealis (Jungermanniopsida: Herbertaceae), with notes on the possible origin of H. sendtneri. Journal of Bryology, 27, 343-350.
8. Feldberg K, Hentschel J, Wilson R, Ryecroft DS, Glenny D, Heinrichs J (2007) Phylogenetic biogeography of the leafy liverwort Herbertus (Jungermanniales, Herbertaceae) based on nuclear and chloroplast DNA sequence data: correlation between genetic variation and geographical distribution. Journal of Biogeography, 34, 688-698.
9. Forrest LL, Crandall-Stotler BJ (2004) A phylogeny of the simple thalloid liverworts (Jungermanniopsida, subclass Metzgeriidae) as inferred from five chloroplast genes. In: Goffinet B, Hollowell V & Magill R (eds.), Molecular Systematics of Bryophytes. Monographs in Systematic Botany, Missouri Botanical Garden, 98, 119-140.
10. Geissler P, Bischler H (1989) Index Hepaticarum. Vol. 11. Cramer, Berlin.
11. Gradstein SR, Churchill SP, Salazar-Allen N (2001) Guide to the bryophytes of tropical America. Memoirs of the New York Botanical Garden, 86, 1-577.
12. Grolle R (1975) Miscellanea hepaticologica 141-150. Journal of Bryology, 8, 483-492.
13. Grolle R (1976) Verzeichnis der Lebermoose Europas und benachbarter Gebiete. Feddes Repertorium, 87, 171-279.
14. Grolle R, Long DG (2000) An annotated check-list of the Hepaticae and Anthocerotae of Europe and Macaronesia. Journal of Bryology, 22, 103-140.
15. Groth H, Lindner M, Wilson R et al. (2003) Biogeography of Plagiochila (Hepaticae): natural species groups span several floristic kingdoms. Journal of Biogeography, 30, 965-978.
16. Hallingbäck T, Hodgetts N (compilers) (2000) Mosses, Liverworts, and Hornworts. Status Survey and Conservation Action Plan for Bryophytes. IUCN/SSC, Bryophyte Specialist Group, IUCN, Gland, Switzerland and Cambridge, UK.
17. Hamilton MB (1999) Four primer pairs for the amplification of chloroplast intergenic regions with intraspecific variation. Molecular Ecology, 8, 513-525.
18. Hattori S (1966) Bryophyta: Hepaticae and Anthocerotae. In: The Flora of Eastern Himalaya (ed. Hara H), pp. 501-536. Tokyo University Press, Tokyo.
19. Hebert PDN, Cywinska A, Ball SL, deWaard JR (2003) Biological identifications through DNA barcodes. Proceedings of the Royal Society B: Biological Sciences, 270, 313-321.
20. Heinrichs J, Feldberg K, Kreier H-P, Váňa J (2010) DNA-based identification of Herbertus species on Gough Island, South Atlantic Ocean. Cryptogamie, Bryologie, 31, 67-74.
21. Hollingsworth PM, Graham SW, Little DP (2011) Choosing and using a plant DNA barcode. Public Library of Science, ONE, 6, e19254.
22. Juslén A (2006a) Phylogeny of Vetaformaceae, Lepicoleaceae and Herbertaceae (including Mastigophoraceae) inferred from chloroplast trnL-F, nuclear ITS2, and morphology. Annales Botanici Fennici, 43, 349-362.
23. Juslén A (2006b) Revision of Asian Herbertus (Herbertaceae, Marchantiophyta). Annales Botanici Fennici, 43, 409-436.
24. Kress WJ, Erickson DL (2007) A two-locus global DNA barcode for land plants: the coding rbcL gene complements the non-coding trnH-psbA spacer region. Public Library of Science, ONE, 2, e508.
25. Long DG, Paton JA, Squirrell J, Woodhead M, Hollingsworth PM (2006) Morphological, ecological and genetic evidence for distinguishing Anastrophyllum joergensenii Schiffn. and A. alpinum Steph. (Jungermanniopsida: Lophoziaceae). Journal of Bryology, 28, 108-117.
26. Miller HA (1965) A review of Herberta in the Tropical Pacific and Asia. Journal of the Hattori Botanical Laboratory, 28, 299-412.
27. Paton JA (1999) The Liverwort Flora of the British Isles. Harley Books, Colchester.
28. Pfeiffer T, Frey W, Stech M (2002) A new species of Treubia (Treubiaceae, Hepaticophytina) from New Zealand based on molecular evidence. Nova Hedwigia, 75, 241-253.
29. Proskauer J (1962) Notes on Hepaticae. IV. The Bryologist, 65, 213-233.
30. Ralser M, Querfurth R, Warnatz H-J, Lehrach H, Yaspo M-L, Krobitsch S (2006) An efficient and economic enhancer mix for PCR. Biochemical and Biophysical Research Communications, 347, 747-751.
31. Sang T, Crawford DJ, Stuessy TF (1997) Chloroplast DNA phylogeny, reticulate evolution and biogeography of Paeonia (Paeoniaceae). American Journal of Botany, 84, 1120-1136.
32. Schumacker R, Váňa J (2005) Identification Keys to the Liverworts and Hornworts of Europe and Macaronesia. Sorus, Poznan.
33. Schuster RM (1966) The Hepaticae and Anthocerotae of North America. Vol. 1. Columbia University Press, New York.
34. Shaw J (2001) Biogeographic patterns and cryptic speciation in bryophytes. Journal of Biogeography, 28, 253-261.
35. Shaw AJ, Szovenyi P, Shaw B (2011) Bryophyte diversity and evolution: Windows into the early evolution of land plants. American Journal of Botany, 98, 352-369.
36. So ML (2003) The genus Herbertus (Hepaticae) in Australasia and the South Pacific. Systematic Botany, 28, 12-23.
37. Stech M, Osman S, Sim-Sim M, Frey W (2006) Molecular systematics and biogeography of the liverwort genus Tylimanthus (Acrobolbaceae) Studies in austral temperate rain forest bryophytes 33. Nova Hedwigia, 83, 17-30.
38. Swofford DL (2003) PAUP*. Phylogenetic Analysis Using Parsimony (*and other methods), version, 4. Sinauer, Associates, Sunderland, Massachusetts.
39. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Molecular Biology and Evolution, 24, 1596-1599.
40. Tate JA, Simpson BB (2003) Paraphyly of Tarasa (Malvaceae) and diverse origins of the polyploid species. Systematic Botany, 28, 723-737.
41. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research, 22, 4673-4680.