Phylogeny of vetaformaceae, lepicoleaceae and herbertaceae (including Mastigophoraceae) inferred from chloroplast trnL-F, nuclear ITS2, and morphology

Annales Botanici Fennici

Volumn 43, Issue 5, 2006, Pages 349-362

  Juslén, Aino ^a,b  

^a UNIVERSITY OF HELSINKI   (Finland)

^b UNIVERSITY OF HELSINKI   (Finland)

Author keywords

Herbertaceae; ITS2; Lepicoleaceae; Mastigophoraceae; Phylogeny; Systematics; trnL F; Vetaformaceae

Indexed keywords

HERBERTACEAE; HERBERTUS; LEPICOLEA; LEPICOLEACEAE; MASTIGOPHORACEAE; RUNCINATUS; VETAFORMACEAE;

EID: 33751242305     PISSN: 00033847     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (64)

1. Ahonen, I. 2004: Molecular phylogeny of the liverwort order Porellales (Marchantiophyta, Jungermanniopsida). - In: Goffinet, B., Hollowell, V. C. & Magill, R. E. (eds.), Molecular systematics of bryophytes: 168-188. Monogr. Syst. Bot. Missouri Bot. Garden 98.
2. Bremer, K. 1994: Branch support and tree stability. - Cladistics 10: 295-304.
3. Crandall-Stotler, B. & Stotler, R. E. 2000: Morphology and classification of the Marchantiophyta. - In: Shaw, A. J. & Goffinet, B. (eds.), Bryophyte biology: 21-70. Cambridge Univ. Press, Cambridge.
4. Doyle, J. J. & Doyle, J. L. 1990: Isolation of plant DNA from fresh tissue. - Focus 12: 13-15.
5. Feldberg, K. & Heinrichs, J. 2005a: Some new synonyms of Herbertus sendtneri (Nees) Lindb. (Jungermanniidae: Herbertaceae) from the Neotropics. - Cryptog. Bryol. 26: 411-416.
6. Feldberg, K. & Heinrichs, J. 2005b: on the identity of Herbertus borealis (Jungermanniopsida: Herbertaceae), with notes on the possible origin of H. sendtneri. - J. Bryol. 27: 343-350.
7. Feldberg, K., Groth, H., Wilson, R., Schäfer-Verwimp, A. & Heinrichs, J. 2004: Cryptic speciation in Herbertus (Herbertaceae, Jungermanniopsida): Range and morphology of Herbertus sendtneri inferred from nrITS sequences. - Plant Syst. Evol. 249: 247-261.
8. Frost, D. R., Etheridge, R., Janies, D. & Titus, T. A. 2001a: Total evidence, sequence alignment, evolution of polychrotid lizards, and a reclassification of the Iguania (Squamata: Iguania). - Am. Mus. Novit. 3343: 1-38.
9. Frost, D. R., Rodrigues, M. T., Grant, T. & Titus, T. A. 2001b: Phylogenetics of the lizard genus Topidurus (Squamata: Tropiduridae: Tropidurinae): direct optimization, descriptive efficiency, and sensitivity analysis of congruence between molecular data and morphology. - Mol. Phylogen. Evol. 21: 352-371.
10. Fulford, M. 1963: Manual of the leafy Hepaticae of Latin America. Part I. - Mem. New York Bot. Garden 11: 85-105.
11. Fulford, M. & Taylor, J. 1959: Two new families of leafy Hepaticae: Vetaformaceae and Pseudolepicoleaceae from southern South America. - Nova Hedwigia 1: 405-422.
12. Giannini, N. P. & Simmons, N. B. 2003: A phylogeny of megachiropteran bats (Mammalia: Chiroptera: Pteropodidae) based on direct optimization analysis of one nuclear and four mitochondrial genes. - Cladistics 19: 496-511.
13. Giribet, G., Edgecombe, G. D. & Wheeler, W. D. 2003: Arthropod phylogeny based on eight molecular loci and morphology. - Nature 413: 157-161.
14. Giribet, G., Edgecombe, G. E., Wheeler, W. C. & Babbit, C. 2002: Phylogeny and systematic position of Opiliones: a combined analysis of chelicerate relationships using morphological and molecular data. - Cladistics 18: 5-70.
15. Gradstein, S. R. 2001: Liverworts and Hornworts: Keys and descriptions. - Mem. New York. Bot. Garden 86: 70-239.
16. Gradstein, S. R. & da Costa, D. P. 2003: The Hepaticae and Anthocerotae of Brazil. - The New York Botanical Garden Press, New York.
17. Grant, T. & Kluge, A. G. 2003: Data exploration in phylogenetic inference: scientific, heuristic, or neither. - Cladistics 15: 415-428.
18. Grolle, R. 1972: Die Namen der Familien und Unterfamilien der Lebermoose (Hepaticopsida). - J. Bryol. 7: 201-236.
19. Grolle, R. 1983: Nomina generica Hepaticarum; references, types and synonymies. - Acta Bot. Fennica 121: 1-62.
20. Harinantenaina, L. & Asakawa, Y. 2004: Chemical constituents of Malagasy liverworts, Parts II: Mastigophoric acid methyl ester of biogenetic interest from Mastigophora diclados (Lepicoleaceae subf. Mastigophoroideae). - Chem. Pharm. Bull. 52: 1382-1384.
21. Hässel de Menendez, G. G. 1980: Patagonian bryophytes 5. Grollea antheliopsis Schust. and its systematic position. - Lindbergia 6: 121-125.
22. Hattori, S. 1966: Bryophyta, Hepaticae & Anthocerotae. - In: Hara, H. (ed.), The flora of eastern Himalaya: 501-536. Tokyo Univ. Press, Tokyo.
23. He-Nygrén, X. & Piippo, S. 2003: Phylogenetic relationships of the generic complex Chiloscyphus-Lophocolea-Heteroscyphus (Geocalycaceae, Hepaticae): insights from three chloroplast genes and morphology. - Ann. Bot. Fennici 40: 317-329.
24. He-Nygrén, X., Ahonen, I., Juslén, A., Glenny, D. & Piippo, S. 2004: Phylogeny of liverworts - beyond a leaf and a thallus. - Monogr. Syst. Bot. Missouri Bot. Garden 98: 87-118.
25. He-Nygrén, X., Juslén, A., Ahonen, I., Glenny, D. & Piippo, S. 2006: Illuminating the evolutionary history of liverworts (Marchantiophyta) - towards a natural classification. - Cladistics 22: 1-31.
26. Heinrichs, J. 2002: A taxonomic revision of Plagiochila sect. Hylacoetes, sect. Adiantoideae and sect. Fuscoluteae in the Neotropics with a preliminary subdivision of Neootropical Plagiochilaceae to nine lineages. - Bryophyt. Bibl. 58: 1-184.
27. Heinrichs, J., Gradstein, S. R., Wilson, R. & Schneider, H. 2005: Towards a natural classification of liverworts (Marchantiophyta) based on the chloroplast gene rbcL. - Cryptog. Bryol. 26: 131-150.
28. Heinrichs, J., Proeschold, T., Renker, C., Groth, H. & Rycroft, D. S. 2002: Plagiochila virginica A. Evans rather than P. dubia Lindenb. & Gottsche occurs in Macaronesia; placement in sect. Contiguae Carl is supported by ITS sequences of nuclear ribosomal DNA. - Plant Syst. Evol. 230: 221-230.
29. Hodgetts, N. G. 2003: Some synonyms of Herbertus dicranus (Taylor ex Gottsche et al.) Trevis. - J. Bryol. 25: 138-140.
30. Huttunen, S. 2004: Phylogeny and evolutionary relationships of the moss families Brachytheciaceae and Meteoriaceae. - Publ. Bot. Univ. Helsinki 34: 1-33.
31. Huttunen, S. & Ignatov, M. S. 2004: Phylogeny of the Brachytheciaceae (Bryophyta) based on morphology and sequence level data. - Cladistics 20: 151-183.
32. Inoue, H. 1978: Studies on Taiwan Hepaticae, III Subord. Herbertinae and Subord. Ptilidiinae. - Bull. Nat. Sci. Mus. [Tokyo], Ser. B. (Bot.) 4: 93-103.
33. Kluge, A. G. 1989: A concern for evidence and a phylogenetic hypothesis of relationships among Epicrates (Boidae, Serpentes). - Syst. Zool. 38: 7-25.
34. Miller, H. A. 1965: A review of Herberta in the tropical Pacific and Asia. - J. Hattori Bot. Lab. 28: 299-330.
35. Morgenstern, B. 1999: Dialign 2: improvement of the segment-to-segment approach to multiple sequence alignment. - Bioinformatics 15: 211-218.
36. Nixon, K. C. & Carpenter, J. M. 1996: On simultaneous analysis. - Cladistics 12: 221-242.
37. Piippo, S. 1984: Bryophyte flora of the Huon Peninsula, Papua New Guinea. III. Haplomitriaceae, Lepicoleaceae, Herbertaceae, Pseudolepicoleaceae, Trichocoleaceae, Schistochilaceae, Balantiopsidaceae, Pleuroziaceae and Porellaceae (Hepaticae). - Ann. Bot. Fennici 21: 21-48.
38. Quandt, D., Huttunen, S., Streimann, H., Frahm, J.-P. & Frey, W. 2004: Molecular phylogenetics of the Meteoriaceae s. str.: focusing on the genera Meteorium and Papillaria. - Mol. Phylogen. Evol. 32: 435-461.
39. Reenen, G. B. A. van 1982: Studies on Colombian Cryptogams XII. High Andean species of Herbertus S. F. Gray (Hepaticae). - Lindbergia 8: 110-120.
40. Renker, C., Heinrichs, J., Proeschold, T., Groth, H. & Holz, I. 2002: ITS sequences of nuclear ribosomal DNA support the generic placement and the disjunct range of Plagiochila (Adelanthus) carringtonii. - Cryptog. Bryol. Lichénol. 23: 23-29.
41. Schulmeister, S., Wheeler, W. C. & Carpenter, J. M. 2002: Simultaneous analysis of the basal lineages of Hymenoptera (Insecta) using sensitivity analysis. - Cladistics 18: 445-484.
42. Schumacker, R. & Váňa, J. 2005: Identification keys to the liverworts and hornworts of Europe and Macaronesia (distribution and status), 2nd ed. - Sorus, Poznan.
43. Schuster, R. M. 1959: Studies on Hepaticae. I. Temnoma. - Bryologist 62: 233-242.
44. Schuster, R. M. 1964: Studies on Hepaticae XXII-XXV, Pleurocladopsis Schust., gen. n., Eoisotachis Schust., gen. n., Grollea Schust., gen. n., with critical notes on Anthelia Dumort. - Nova Hedwigia 8: 275-296.
45. Schuster, R. M. 1966: The Hepaticae and Anthocerotae of North America, east of hundredth meridian, vol. 1. - Columbia Univ. Press, New York.
46. Schuster, R. M. 1972: Phylogenetic and taxonomic studies on Jungermanniidae. - J. Hattori Bot. Lab. 36: 321-405.
47. Schuster, R. M. 1979: The phylogeny of the Hepaticae. - In: Clarke, G. C. S. & Duckett, J. G. (eds.), Bryophyte systematics: 41-82. Acad. Press, London & New York.
48. Schuster, R. M. 1984: Evolution, phylogeny and classification of the Hepaticae. - In: Schuster, R. M. (ed.), New manual of bryology: 892-1070. Hattori Bot. Lab., Nichinan.
49. Schuster, R. M. 1987: Phylogenetic studies on Jungermanniidae, II. Mastigophoraceae and Chaetophyllopsidaceae. - Mem. New York Bot. Garden 45: 733-748.
50. Schuster, R. M. 1996: On Olgantha Schust., gen. n. Isophylly and evolution of Jungermanniales. - Nova Hedwigia 63: 529-543.
51. Schuster, R. M. 2000: Austral Hepaticae, part I. - Nova Hedwigia Beih. 118: 1-524.
52. Schuster, R. M. 2002: Austral Hepaticae, part II. - Nova Hedwigia Beih. 119: 1-606.
53. Scott, E. B. 1960: A monograph of the genus Lepicolea (Hepaticae). - Nova Hedwigia 2: 129-167.
54. Shaw, A. J. 2000: Molecular phylogeography and cryptic speciation in the mosses, Mielichhoferia elongata and M. mielichhoferiana (Bryaceae). - Mol. Ecol. 9: 595-608.
55. So, M. L. 2003: The genus Herbertus (Hepaticae) in Australasia and the South Pacific. - Syst. Bot. 28: 12-23.
56. Stech, M. & Frey, W. 2001: CpDNA-relationship and classification of the liverworts (Hepaticophytina, Bryophyta). - Nova Hedwigia 72: 45-58.
57. Stenroos, S., Hyvönen, J. Myllys, L., Thell, A. & Ahti, T. 2002: Phylogeny of the genus Cladonia s.lat. (Cladoniaceae, Ascomycetes) inferred from molecular, morphological and chemical data. - Cladistics 18: 237-278.
58. Taberlet, P., Gielly, L., Patou G. & Bouvet, G. 1991: Universal primers for amplification of three non-coding regions of chloroplast DNA. - Plant Mol. Biol. 17: 1105-1109.
59. Wahlberg, N. & Zimmermann, M. 2000: Pattern of phylogenetic relationships among members of the tribe Melitaeini (Lepidoptera: Nymphalidae) inferred from mitochondrial DNA sequences. - Cladistics 16: 347-363.
60. Wheeler, W. C. 1995: Sequence alignment, parameter sensitivity, and the phylogenetic analysis of molecular data. - Syst. Biol. 44: 321-331.
61. Wheeler, W. C. 1996: Optimization alignment: the end of multiple sequence alignment in phylogenetics. - Cladistics 12: 1-9.
62. Wheeler, W. C., Gladstein, D. & De Laet, J. 2003: POY, phylogeny reconstruction via optimization of DNA and other data version 3.0.11 documentation and command summary. Am. Mus. Nat. Hist. available at ftp://ftp.amnh.org/pub/molecular/poy.
63. Wheeler, W. C., Whiting, M., Wheeler, Q. D. & Carpenter, J. M. 2001: The phylogeny of the extant hexapod orders. - Cladistics 17: 113-169.
64. White, T. J., Bruns, T., Lee, S. & Taylor, J. 1990: Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. - In: Innsi, M., Gelfand, D., Sninsky, J. & White, T. (eds.) PCR protocols: a guide to methods and applications: 315-322. Acad. Press, San Diego.