메뉴 건너뛰기




Volumn 12, Issue , 2011, Pages

Correlation of gene expression and protein production rate - a system wide study

Author keywords

[No Author keywords available]

Indexed keywords

PROTEOME; TRANSCRIPTOME; FUNGAL PROTEIN;

EID: 83655197847     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-12-616     Document Type: Article
Times cited : (58)

References (130)
  • 2
    • 77953684935 scopus 로고    scopus 로고
    • Nutrient control of eukaryote cell growth: a systems biology study in yeast
    • 10.1186/1741-7007-8-68, 2895586, 20497545
    • Gutteridge A, Pir P, Castrillo J, Charles P, Lilley K, Oliver S. Nutrient control of eukaryote cell growth: a systems biology study in yeast. BMC biology 2010, 8:68. 10.1186/1741-7007-8-68, 2895586, 20497545.
    • (2010) BMC biology , vol.8 , pp. 68
    • Gutteridge, A.1    Pir, P.2    Castrillo, J.3    Charles, P.4    Lilley, K.5    Oliver, S.6
  • 5
    • 35548931140 scopus 로고    scopus 로고
    • Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina
    • 10.1186/1471-2164-8-325, 2045113, 17868481
    • Arvas M, Kivioja T, Mitchell A, Saloheimo M, Ussery D, Penttilä M, Oliver S. Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina. BMC genomics 2007, 8:325. 10.1186/1471-2164-8-325, 2045113, 17868481.
    • (2007) BMC genomics , vol.8 , pp. 325
    • Arvas, M.1    Kivioja, T.2    Mitchell, A.3    Saloheimo, M.4    Ussery, D.5    Penttilä, M.6    Oliver, S.7
  • 6
    • 58549084410 scopus 로고    scopus 로고
    • How Saccharomyces responds to nutrients
    • 10.1146/annurev.genet.41.110306.130206, 18303986
    • Zaman S, Lippman S, Zhao X, Broach J. How Saccharomyces responds to nutrients. Annual review of genetics 2008, 42:27-81. 10.1146/annurev.genet.41.110306.130206, 18303986.
    • (2008) Annual review of genetics , vol.42 , pp. 27-81
    • Zaman, S.1    Lippman, S.2    Zhao, X.3    Broach, J.4
  • 9
    • 57749106706 scopus 로고    scopus 로고
    • The transcriptional coactivators SAGA, SWI/SNF, and mediator make distinct contributions to activation of glucose-repressed genes
    • 10.1074/jbc.M805258200, 2586256, 18826948
    • Biddick R, Law G, Chin K, Young E. The transcriptional coactivators SAGA, SWI/SNF, and mediator make distinct contributions to activation of glucose-repressed genes. Journal of Biological Chemistry 2008, 283(48):33101. 10.1074/jbc.M805258200, 2586256, 18826948.
    • (2008) Journal of Biological Chemistry , vol.283 , Issue.48 , pp. 33101
    • Biddick, R.1    Law, G.2    Chin, K.3    Young, E.4
  • 10
    • 77955086994 scopus 로고    scopus 로고
    • The genomic organization of plant pathogenicity in Fusarium species
    • Rep M, Kistler H. The genomic organization of plant pathogenicity in Fusarium species. Current opinion in plant biology 2010,
    • (2010) Current opinion in plant biology
    • Rep, M.1    Kistler, H.2
  • 11
    • 70149110707 scopus 로고    scopus 로고
    • The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion
    • 10.1371/journal.pgen.1000618, 2725324, 19714214
    • Coleman J, Rounsley S, Rodriguez-Carres M, Kuo A, Wasmann C, Grimwood J, Schmutz J, Taga M, White G, Zhou S, et al. The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion. PLoS Genet 2009, 5(8):e1000618. 10.1371/journal.pgen.1000618, 2725324, 19714214.
    • (2009) PLoS Genet , vol.5 , Issue.8
    • Coleman, J.1    Rounsley, S.2    Rodriguez-Carres, M.3    Kuo, A.4    Wasmann, C.5    Grimwood, J.6    Schmutz, J.7    Taga, M.8    White, G.9    Zhou, S.10
  • 17
    • 33750219521 scopus 로고    scopus 로고
    • Organization of chromosome ends in the rice blast fungus, Magnaporthe oryzae
    • 10.1093/nar/gkl588, 1635262, 16963777
    • Rehmeyer C, Li W, Kusaba M, Kim YS, Brown D, Staben C, Dean R, Farman M. Organization of chromosome ends in the rice blast fungus, Magnaporthe oryzae. Nucl Acids Res 2006, 34(17):4685-4701. 10.1093/nar/gkl588, 1635262, 16963777.
    • (2006) Nucl Acids Res , vol.34 , Issue.17 , pp. 4685-4701
    • Rehmeyer, C.1    Li, W.2    Kusaba, M.3    Kim, Y.S.4    Brown, D.5    Staben, C.6    Dean, R.7    Farman, M.8
  • 18
    • 51449114296 scopus 로고    scopus 로고
    • Meiotic recombination at the ends of chromosomes in Saccharomyces cerevisiae
    • 10.1534/genetics.107.083493, 2475728, 18562657
    • Barton A, Pekosz M, Kurvathi R, Kaback D. Meiotic recombination at the ends of chromosomes in Saccharomyces cerevisiae. Genetics 2008, 179(3):1221. 10.1534/genetics.107.083493, 2475728, 18562657.
    • (2008) Genetics , vol.179 , Issue.3 , pp. 1221
    • Barton, A.1    Pekosz, M.2    Kurvathi, R.3    Kaback, D.4
  • 19
    • 65349186490 scopus 로고    scopus 로고
    • Relationship between phylogenetic distribution and genomic features in Neurospora crassa
    • Kasuga T, Mannhaupt G, Glass N. Relationship between phylogenetic distribution and genomic features in Neurospora crassa. PLoS One 2009, 4(4):5286.
    • (2009) PLoS One , vol.4 , Issue.4 , pp. 5286
    • Kasuga, T.1    Mannhaupt, G.2    Glass, N.3
  • 22
    • 33749236250 scopus 로고    scopus 로고
    • A fungal family of transcriptional regulators: the zinc cluster proteins
    • 10.1128/MMBR.00015-06, 1594591, 16959962
    • MacPherson S, Larochelle M, Turcotte B. A fungal family of transcriptional regulators: the zinc cluster proteins. Microbiology and Molecular Biology Reviews 2006, 70(3):583. 10.1128/MMBR.00015-06, 1594591, 16959962.
    • (2006) Microbiology and Molecular Biology Reviews , vol.70 , Issue.3 , pp. 583
    • MacPherson, S.1    Larochelle, M.2    Turcotte, B.3
  • 23
    • 30544434099 scopus 로고    scopus 로고
    • Fungal secondary metabolism - from biochemistry to genomics
    • 10.1038/nrmicro1286, 16322742
    • Keller N, Turner G, Bennett J. Fungal secondary metabolism - from biochemistry to genomics. Nature Reviews Microbiology 2005, 3(12):937-947. 10.1038/nrmicro1286, 16322742.
    • (2005) Nature Reviews Microbiology , vol.3 , Issue.12 , pp. 937-947
    • Keller, N.1    Turner, G.2    Bennett, J.3
  • 27
    • 35448960889 scopus 로고    scopus 로고
    • The initiation and pattern of spread of histone H4 acetylation parallel the order of transcriptional activation of genes in the aflatoxin cluster
    • 10.1111/j.1365-2958.2007.05952.x, 17919289
    • Roze L, Arthur A, Hong S, Chanda A, Linz J. The initiation and pattern of spread of histone H4 acetylation parallel the order of transcriptional activation of genes in the aflatoxin cluster. Molecular microbiology 2007, 66(3):713-726. 10.1111/j.1365-2958.2007.05952.x, 17919289.
    • (2007) Molecular microbiology , vol.66 , Issue.3 , pp. 713-726
    • Roze, L.1    Arthur, A.2    Hong, S.3    Chanda, A.4    Linz, J.5
  • 28
    • 0042432086 scopus 로고    scopus 로고
    • Directed evolution of industrial enzymes: an update
    • 10.1016/S0958-1669(03)00099-5, 12943855
    • Cherry J, Fidantsef A. Directed evolution of industrial enzymes: an update. Current Opinion in Biotechnology 2003, 14(4):438-443. 10.1016/S0958-1669(03)00099-5, 12943855.
    • (2003) Current Opinion in Biotechnology , vol.14 , Issue.4 , pp. 438-443
    • Cherry, J.1    Fidantsef, A.2
  • 29
    • 0021720589 scopus 로고
    • Lactase production in continuous culture by Trichoderma reesei Rut-C30
    • Castillo F, Blanch H, Wilke C. Lactase production in continuous culture by Trichoderma reesei Rut-C30. Biotechnology letters 1984, 6(9):593-596.
    • (1984) Biotechnology letters , vol.6 , Issue.9 , pp. 593-596
    • Castillo, F.1    Blanch, H.2    Wilke, C.3
  • 30
    • 0028630394 scopus 로고
    • Comparison of growth and maintenance parameters for cellulase biosynthesis by Trichoderma reesei-C5 with some published data
    • Chaudhuri B, Sahai V. Comparison of growth and maintenance parameters for cellulase biosynthesis by Trichoderma reesei-C5 with some published data. Enzyme and microbial technology 1994, 16(12):1079-1083.
    • (1994) Enzyme and microbial technology , vol.16 , Issue.12 , pp. 1079-1083
    • Chaudhuri, B.1    Sahai, V.2
  • 31
    • 0027112230 scopus 로고
    • Cellulase production in continuous culture by Trichoderma reesei on xylose-based media
    • 10.1002/bit.260390808, 18601020
    • Schafner D, Toledo R. Cellulase production in continuous culture by Trichoderma reesei on xylose-based media. Biotechnology and bioengineering 1992, 39(8):865-869. 10.1002/bit.260390808, 18601020.
    • (1992) Biotechnology and bioengineering , vol.39 , Issue.8 , pp. 865-869
    • Schafner, D.1    Toledo, R.2
  • 32
    • 13444273564 scopus 로고    scopus 로고
    • The effect of specific growth rate on protein synthesis and secretion in the filamentous fungus Trichoderma reesei
    • 10.1099/mic.0.27458-0, 15632433
    • Pakula T, Salonen K, Uusitalo J, Penttilä M. The effect of specific growth rate on protein synthesis and secretion in the filamentous fungus Trichoderma reesei. Microbiology 2005, 151:135-143. 10.1099/mic.0.27458-0, 15632433.
    • (2005) Microbiology , vol.151 , pp. 135-143
    • Pakula, T.1    Salonen, K.2    Uusitalo, J.3    Penttilä, M.4
  • 33
    • 0034607634 scopus 로고    scopus 로고
    • Growth-rate-independent production of recombinant glucoamylase by Fusarium venenatum JeRS 325
    • 10.1002/(SICI)1097-0290(20000505)68:3<245::AID-BIT2>3.0.CO;2-F, 10745192
    • Wiebe M, Robson G, Shuster J, Trinci A. Growth-rate-independent production of recombinant glucoamylase by Fusarium venenatum JeRS 325. Biotechnology and bioengineering 2000, 68(3):245-251. 10.1002/(SICI)1097-0290(20000505)68:3<245::AID-BIT2>3.0.CO;2-F, 10745192.
    • (2000) Biotechnology and bioengineering , vol.68 , Issue.3 , pp. 245-251
    • Wiebe, M.1    Robson, G.2    Shuster, J.3    Trinci, A.4
  • 34
    • 0031873825 scopus 로고    scopus 로고
    • [alpha]-Amylase production in recombinant Aspergillus oryzae during fed-batch and continuous cultivations
    • Spohr A, Carlsen M, Nielsen J, Villadsen J. [alpha]-Amylase production in recombinant Aspergillus oryzae during fed-batch and continuous cultivations. Journal of Fermentation and Bioengineering 1998, 86:49-56.
    • (1998) Journal of Fermentation and Bioengineering , vol.86 , pp. 49-56
    • Spohr, A.1    Carlsen, M.2    Nielsen, J.3    Villadsen, J.4
  • 35
    • 0034072040 scopus 로고    scopus 로고
    • Glucoamylase production in batch, chemostat and fed-batch cultivations by an industrial strain of Aspergillus niger
    • 10.1007/s002530050020, 10772465
    • Pedersen H, Beyer M, Nielsen J. Glucoamylase production in batch, chemostat and fed-batch cultivations by an industrial strain of Aspergillus niger. Applied microbiology and biotechnology 2000, 53(3):272-277. 10.1007/s002530050020, 10772465.
    • (2000) Applied microbiology and biotechnology , vol.53 , Issue.3 , pp. 272-277
    • Pedersen, H.1    Beyer, M.2    Nielsen, J.3
  • 36
    • 0028844656 scopus 로고
    • Crel, the carbon catabolite repressor protein from Trichoderma reesei
    • 10.1016/0014-5793(95)01255-5, 8521952
    • Strauss J, Mach R, Zeilinger S, Hartler G, Stöffer G, Wolschek M, Kubicek C. Crel, the carbon catabolite repressor protein from Trichoderma reesei. FEBS letters 1995, 376(1-2):103-107. 10.1016/0014-5793(95)01255-5, 8521952.
    • (1995) FEBS letters , vol.376 , Issue.1-2 , pp. 103-107
    • Strauss, J.1    Mach, R.2    Zeilinger, S.3    Hartler, G.4    Stöffer, G.5    Wolschek, M.6    Kubicek, C.7
  • 37
    • 34250621803 scopus 로고    scopus 로고
    • Lactose metabolism in filamentous fungi: how to deal with an unknown substrate
    • Seiboth B, Pakdaman B, Hartl L, Kubicek C. Lactose metabolism in filamentous fungi: how to deal with an unknown substrate. Fungal Biology Reviews 2007, 21:42-48.
    • (2007) Fungal Biology Reviews , vol.21 , pp. 42-48
    • Seiboth, B.1    Pakdaman, B.2    Hartl, L.3    Kubicek, C.4
  • 38
    • 70349772781 scopus 로고    scopus 로고
    • Metabolic engineering strategies for the improvement of cellulase production by Hypocrea jecorina
    • 10.1186/1754-6834-2-19, 2749017, 19723296
    • Kubicek C, Mikus M, Schuster A, Schmoll M, Seiboth B. Metabolic engineering strategies for the improvement of cellulase production by Hypocrea jecorina. Biotechnology for Biofuels 2009, 2:19. 10.1186/1754-6834-2-19, 2749017, 19723296.
    • (2009) Biotechnology for Biofuels , vol.2 , pp. 19
    • Kubicek, C.1    Mikus, M.2    Schuster, A.3    Schmoll, M.4    Seiboth, B.5
  • 39
    • 1542350073 scopus 로고    scopus 로고
    • Role of transcriptional regulation in controlling fluxes in central carbon metabolism of Saccharomyces cerevisiae
    • 10.1074/jbc.M309578200, 14630934
    • Daran-Lapujade P, Jansen M, Daran J, van Gulik W, de Winde J, Pronk J. Role of transcriptional regulation in controlling fluxes in central carbon metabolism of Saccharomyces cerevisiae. Journal of Biological Chemistry 2004, 279(10):9125. 10.1074/jbc.M309578200, 14630934.
    • (2004) Journal of Biological Chemistry , vol.279 , Issue.10 , pp. 9125
    • Daran-Lapujade, P.1    Jansen, M.2    Daran, J.3    van Gulik, W.4    de Winde, J.5    Pronk, J.6
  • 40
    • 60749120294 scopus 로고    scopus 로고
    • Combinatorial effects of environmental parameters on transcriptional regulation in Saccharomyces cerevisiae: A quantitative analysis of a compendium of chemostat-based transcriptome data
    • 10.1186/1471-2164-10-53, 2640415, 19173729
    • Knijnenburg T, Daran J, Van Den Broek M, Daran-Lapujade P, De Winde J, Pronk J, Reinders M, Wessels L. Combinatorial effects of environmental parameters on transcriptional regulation in Saccharomyces cerevisiae: A quantitative analysis of a compendium of chemostat-based transcriptome data. BMC genomics 2009, 10:53. 10.1186/1471-2164-10-53, 2640415, 19173729.
    • (2009) BMC genomics , vol.10 , pp. 53
    • Knijnenburg, T.1    Daran, J.2    Van Den Broek, M.3    Daran-Lapujade, P.4    De Winde, J.5    Pronk, J.6    Reinders, M.7    Wessels, L.8
  • 41
    • 0037323934 scopus 로고    scopus 로고
    • Activation mechanisms of the HAC1-mediated unfolded protein response in filamentous fungi
    • 10.1046/j.1365-2958.2003.03363.x, 12581366
    • Saloheimo M, Valkonen M, M P. Activation mechanisms of the HAC1-mediated unfolded protein response in filamentous fungi. Mol Microbiol 2003, 47(4):1149-61. 10.1046/j.1365-2958.2003.03363.x, 12581366.
    • (2003) Mol Microbiol , vol.47 , Issue.4 , pp. 1149-1161
    • Saloheimo, M.1    Valkonen, M.2    M, P.3
  • 42
    • 33646336623 scopus 로고    scopus 로고
    • Rapid and multiplexed transcript analysis of microbial cultures using capillary electophoresis-detectable oligonucleotide probe pools
    • 10.1016/j.mimet.2005.08.010, 16198435
    • Rautio JJ, Kataja K, Satokari R, Penttilä M, Soderlund H, Saloheimo M. Rapid and multiplexed transcript analysis of microbial cultures using capillary electophoresis-detectable oligonucleotide probe pools. Journal of microbiological methods 2006, 65(3):404-416. 10.1016/j.mimet.2005.08.010, 16198435.
    • (2006) Journal of microbiological methods , vol.65 , Issue.3 , pp. 404-416
    • Rautio, J.J.1    Kataja, K.2    Satokari, R.3    Penttilä, M.4    Soderlund, H.5    Saloheimo, M.6
  • 43
    • 0038329323 scopus 로고    scopus 로고
    • Nicotinamide and PNC1 govern lifespan extension by calorie restriction in Saccharomyces cerevisiae
    • 10.1038/nature01578, 12736687
    • Anderson R, Bitterman K, Wood J, Medvedik O, Sinclair D. Nicotinamide and PNC1 govern lifespan extension by calorie restriction in Saccharomyces cerevisiae. Nature 2003, 423(6936):181-185. 10.1038/nature01578, 12736687.
    • (2003) Nature , vol.423 , Issue.6936 , pp. 181-185
    • Anderson, R.1    Bitterman, K.2    Wood, J.3    Medvedik, O.4    Sinclair, D.5
  • 44
    • 79958071043 scopus 로고    scopus 로고
    • Cloning and functional analysis of the dpm2 and dpm3 genes from Trichoderma reesei expressed in a Saccharomyces cerevisiae dpm1Δ mutant strain
    • 10.1515/BC.2011.058, 21521073
    • Zembek P, Perlińska-Lenart U, Rawa K, Górka-Nieć W, Palamarczyk G, Kruszewska J. Cloning and functional analysis of the dpm2 and dpm3 genes from Trichoderma reesei expressed in a Saccharomyces cerevisiae dpm1Δ mutant strain. Biological Chemistry 2011, 392(6):517-527. 10.1515/BC.2011.058, 21521073.
    • (2011) Biological Chemistry , vol.392 , Issue.6 , pp. 517-527
    • Zembek, P.1    Perlińska-Lenart, U.2    Rawa, K.3    Górka-Nieć, W.4    Palamarczyk, G.5    Kruszewska, J.6
  • 45
    • 0032884910 scopus 로고    scopus 로고
    • The protein disulphide isomerase gene of the fungus Trichoderma reesei is induced by endoplasmic reticulum stress and regulated by the carbon source
    • Saloheimo M, Lund M, Penttilä M. The protein disulphide isomerase gene of the fungus Trichoderma reesei is induced by endoplasmic reticulum stress and regulated by the carbon source. Molecular and General Genetics MGG 1999, 262:35-45.
    • (1999) Molecular and General Genetics MGG , vol.262 , pp. 35-45
    • Saloheimo, M.1    Lund, M.2    Penttilä, M.3
  • 46
    • 14544268137 scopus 로고    scopus 로고
    • Uncovering transcriptional regulation of metabolism by using metabolic network topology
    • 10.1073/pnas.0406811102, 549453, 15710883
    • Patil K, Nielsen J. Uncovering transcriptional regulation of metabolism by using metabolic network topology. Proceedings of the National Academy of Sciences of the United States of America 2005, 102(8):2685. 10.1073/pnas.0406811102, 549453, 15710883.
    • (2005) Proceedings of the National Academy of Sciences of the United States of America , vol.102 , Issue.8 , pp. 2685
    • Patil, K.1    Nielsen, J.2
  • 47
    • 70350126661 scopus 로고    scopus 로고
    • Detection of Molecular Paths Associated with Insulitis and Type 1 Diabetes in Non-Obese Diabetic Mouse
    • Lindfors E, Gopalacharyulu P, Halperin E, Orešič. Detection of Molecular Paths Associated with Insulitis and Type 1 Diabetes in Non-Obese Diabetic Mouse. PloS one 2009, 4(10):7323.
    • (2009) PloS one , vol.4 , Issue.10 , pp. 7323
    • Lindfors, E.1    Gopalacharyulu, P.2    Halperin, E.3    Orešič4
  • 48
    • 41149105489 scopus 로고    scopus 로고
    • Metabolic model integration of the bibliome, genome, metabolome and reactome of Aspergillus niger
    • Andersen M, Nielsen M, Nielsen J. Metabolic model integration of the bibliome, genome, metabolome and reactome of Aspergillus niger. Molecular Systems Biology 2008, 4.
    • (2008) Molecular Systems Biology , vol.4
    • Andersen, M.1    Nielsen, M.2    Nielsen, J.3
  • 51
    • 67650556186 scopus 로고    scopus 로고
    • The ThPG1 endopolygalacturonase is required for the Trichoderma harzianum-plant beneficial interaction
    • 10.1094/MPMI-22-8-1021, 19589077
    • Moran-Diez E, Hermosa R, Ambrosino P, Cardoza R, Gutiérrez S, Lorito M, Monte E. The ThPG1 endopolygalacturonase is required for the Trichoderma harzianum-plant beneficial interaction. Molecular Plant-Microbe Interactions 2009, 22(8):1021-1031. 10.1094/MPMI-22-8-1021, 19589077.
    • (2009) Molecular Plant-Microbe Interactions , vol.22 , Issue.8 , pp. 1021-1031
    • Moran-Diez, E.1    Hermosa, R.2    Ambrosino, P.3    Cardoza, R.4    Gutiérrez, S.5    Lorito, M.6    Monte, E.7
  • 52
    • 33745584818 scopus 로고    scopus 로고
    • Oxygen-and Glucose-Dependent Expression of Trhxt1, a Putative Glucose Transporter Gene of Trichoderma reesei
    • 10.1021/bi052553y, 16800643
    • Ramos A, Chambergo F, Bonaccorsi E, Ferreira A, Cella N, Gombert A, Tonso A, El-Dorry H. Oxygen-and Glucose-Dependent Expression of Trhxt1, a Putative Glucose Transporter Gene of Trichoderma reesei. Biochemistry 2006, 45(26):8184-8192. 10.1021/bi052553y, 16800643.
    • (2006) Biochemistry , vol.45 , Issue.26 , pp. 8184-8192
    • Ramos, A.1    Chambergo, F.2    Bonaccorsi, E.3    Ferreira, A.4    Cella, N.5    Gombert, A.6    Tonso, A.7    El-Dorry, H.8
  • 54
    • 0037292952 scopus 로고    scopus 로고
    • Mkp1 and Mkp2, two MAPKAP-kinase homologues in Schizosaccharomyces pombe, interact with the MAP kinase Sty1
    • Asp E, Sunnerhagen P. Mkp1 and Mkp2, two MAPKAP-kinase homologues in Schizosaccharomyces pombe, interact with the MAP kinase Sty1. Molecular Genetics and Genomics 2003, 268(5):585-597.
    • (2003) Molecular Genetics and Genomics , vol.268 , Issue.5 , pp. 585-597
    • Asp, E.1    Sunnerhagen, P.2
  • 55
    • 0038025418 scopus 로고    scopus 로고
    • The endo-beta-1, 3-glucanase eng1p is required for dissolution of the primary septum during cell separation in Schizosaccharomyces pombe
    • Martin-Cuadrado A, Dueñas E, Sipiczki M, Vázquez A, Del Rey F. The endo-beta-1, 3-glucanase eng1p is required for dissolution of the primary septum during cell separation in Schizosaccharomyces pombe. Journal of cell science 2003, 116(Pt 9):1689.
    • (2003) Journal of cell science , vol.116 , Issue.PART 9 , pp. 1689
    • Martin-Cuadrado, A.1    Dueñas, E.2    Sipiczki, M.3    Vázquez, A.4    Del Rey, F.5
  • 56
    • 0042208118 scopus 로고    scopus 로고
    • Molecular cloning of a phospholipase D gene from Aspergillus nidulans and characterization of its deletion mutants
    • 10.1016/S0378-1097(03)00440-3, 12892887
    • Hong S, Horiuchi H, Ohta A. Molecular cloning of a phospholipase D gene from Aspergillus nidulans and characterization of its deletion mutants. FEMS microbiology letters 2003, 224(2):231-237. 10.1016/S0378-1097(03)00440-3, 12892887.
    • (2003) FEMS microbiology letters , vol.224 , Issue.2 , pp. 231-237
    • Hong, S.1    Horiuchi, H.2    Ohta, A.3
  • 57
    • 30744434841 scopus 로고    scopus 로고
    • Screening of growth-or development-related genes by using genomic library with inducible promoter in Aspergillus nidulans
    • Lee B, Han S, Choi H, Kim J, Han K, Han D. Screening of growth-or development-related genes by using genomic library with inducible promoter in Aspergillus nidulans. Journal of microbiology (Seoul, Korea) 2005, 43(6):523.
    • (2005) Journal of microbiology (Seoul, Korea) , vol.43 , Issue.6 , pp. 523
    • Lee, B.1    Han, S.2    Choi, H.3    Kim, J.4    Han, K.5    Han, D.6
  • 58
    • 0036118353 scopus 로고    scopus 로고
    • Proteomics analysis reveals stable multiprotein complexes in both fission and budding yeasts containing Myb-related Cdc5p/Cef1p, novel pre-mRNA splicing factors, and snRNAs
    • 10.1128/MCB.22.7.2011-2024.2002, 133674, 11884590
    • Ohi M, Link A, Ren L, Jennings J, McDonald W, Gould K. Proteomics analysis reveals stable multiprotein complexes in both fission and budding yeasts containing Myb-related Cdc5p/Cef1p, novel pre-mRNA splicing factors, and snRNAs. Molecular and cellular biology 2002, 22(7):2011. 10.1128/MCB.22.7.2011-2024.2002, 133674, 11884590.
    • (2002) Molecular and cellular biology , vol.22 , Issue.7 , pp. 2011
    • Ohi, M.1    Link, A.2    Ren, L.3    Jennings, J.4    McDonald, W.5    Gould, K.6
  • 60
    • 0036460699 scopus 로고    scopus 로고
    • The Trichoderma atroviride seb1 (stress response element binding) gene encodes an AGGGG-binding protein which is involved in the response to high osmolarity stress
    • 10.1007/s00438-002-0732-z, 12395196
    • Peterbauer C, Litscher D, Kubicek C. The Trichoderma atroviride seb1 (stress response element binding) gene encodes an AGGGG-binding protein which is involved in the response to high osmolarity stress. Molecular Genetics and Genomics 2002, 268(2):223-231. 10.1007/s00438-002-0732-z, 12395196.
    • (2002) Molecular Genetics and Genomics , vol.268 , Issue.2 , pp. 223-231
    • Peterbauer, C.1    Litscher, D.2    Kubicek, C.3
  • 61
    • 8744294000 scopus 로고    scopus 로고
    • The fungal STRE-element-binding protein Seb1 is involved but not essential for glycerol dehydrogenase (gld1) gene expression and glycerol accumulation in Trichoderma atroviride during osmotic stress
    • 10.1016/j.fgb.2004.09.002, 15531216
    • Seidl V, Seiboth B, Karaffa L, Kubicek C. The fungal STRE-element-binding protein Seb1 is involved but not essential for glycerol dehydrogenase (gld1) gene expression and glycerol accumulation in Trichoderma atroviride during osmotic stress. Fungal genetics and biology 2004, 41(12):1132-1140. 10.1016/j.fgb.2004.09.002, 15531216.
    • (2004) Fungal genetics and biology , vol.41 , Issue.12 , pp. 1132-1140
    • Seidl, V.1    Seiboth, B.2    Karaffa, L.3    Kubicek, C.4
  • 62
    • 53749103106 scopus 로고    scopus 로고
    • The information highways of a biotechnological workhorse - signal transduction in Hypocrea jecorina
    • 10.1186/1471-2164-9-430, 2566311, 18803869
    • Schmoll M. The information highways of a biotechnological workhorse - signal transduction in Hypocrea jecorina. BMC genomics 2008, 9:430. 10.1186/1471-2164-9-430, 2566311, 18803869.
    • (2008) BMC genomics , vol.9 , pp. 430
    • Schmoll, M.1
  • 64
    • 23944433365 scopus 로고    scopus 로고
    • Identification in the Mold Hypocrea jecorina of the First Fungal d-Galacturonic Acid Reductase
    • 10.1021/bi050792f, 16101307
    • Kuorelahti S, Kalkkinen N, Penttilä M, Londesborough J, Richard P. Identification in the Mold Hypocrea jecorina of the First Fungal d-Galacturonic Acid Reductase. Biochemistry 2005, 44(33):11234-11240. 10.1021/bi050792f, 16101307.
    • (2005) Biochemistry , vol.44 , Issue.33 , pp. 11234-11240
    • Kuorelahti, S.1    Kalkkinen, N.2    Penttilä, M.3    Londesborough, J.4    Richard, P.5
  • 65
    • 27644551948 scopus 로고    scopus 로고
    • Sequential gene deletions in Hypocrea jecorina using a single blaster cassette
    • 10.1007/s00294-005-0011-8, 16091959
    • Hartl L, Seiboth B. Sequential gene deletions in Hypocrea jecorina using a single blaster cassette. Current genetics 2005, 48(3):204-211. 10.1007/s00294-005-0011-8, 16091959.
    • (2005) Current genetics , vol.48 , Issue.3 , pp. 204-211
    • Hartl, L.1    Seiboth, B.2
  • 66
    • 34347204131 scopus 로고    scopus 로고
    • Physiological evaluation of the filamentous fungus Trichoderma reesei in production processes by marker gene expression analysis
    • 10.1186/1472-6750-7-28, 1899492, 17537269
    • Rautio J, Bailey M, Kivioja T, Soderlund H, Penttilä M, Saloheimo M. Physiological evaluation of the filamentous fungus Trichoderma reesei in production processes by marker gene expression analysis. BMC biotechnology 2007, 7:28. 10.1186/1472-6750-7-28, 1899492, 17537269.
    • (2007) BMC biotechnology , vol.7 , pp. 28
    • Rautio, J.1    Bailey, M.2    Kivioja, T.3    Soderlund, H.4    Penttilä, M.5    Saloheimo, M.6
  • 68
    • 77954676864 scopus 로고    scopus 로고
    • Array comparative genomic hybridization analysis of Trichoderma reesei strains with enhanced cellulase production properties
    • 10.1186/1471-2164-11-441, 3091638, 20642838
    • Vitikainen M, Arvas M, Pakula T, Oja M, Penttilä M, Saloheimo M. Array comparative genomic hybridization analysis of Trichoderma reesei strains with enhanced cellulase production properties. BMC genomics 2010, 11:441. 10.1186/1471-2164-11-441, 3091638, 20642838.
    • (2010) BMC genomics , vol.11 , pp. 441
    • Vitikainen, M.1    Arvas, M.2    Pakula, T.3    Oja, M.4    Penttilä, M.5    Saloheimo, M.6
  • 69
    • 20444391995 scopus 로고    scopus 로고
    • Cloning and characterization of the glucosidase II alpha subunit gene of Trichoderma reesei: a frameshift mutation results in the aberrant glycosylation profile of the hypercellulolytic strain Rut-C30
    • 10.1128/AEM.71.6.2910-2924.2005, 1151825, 15932985
    • Geysens S, Pakula T, Uusitalo J, Dewerte I, Penttila M, Contreras R. Cloning and characterization of the glucosidase II alpha subunit gene of Trichoderma reesei: a frameshift mutation results in the aberrant glycosylation profile of the hypercellulolytic strain Rut-C30. Applied and environmental microbiology 2005, 71(6):2910. 10.1128/AEM.71.6.2910-2924.2005, 1151825, 15932985.
    • (2005) Applied and environmental microbiology , vol.71 , Issue.6 , pp. 2910
    • Geysens, S.1    Pakula, T.2    Uusitalo, J.3    Dewerte, I.4    Penttila, M.5    Contreras, R.6
  • 70
    • 0030036051 scopus 로고    scopus 로고
    • The glucose repressor gene cre1 of Trichoderma: Isolation and expression of a full-length and a truncated mutant form
    • Ilmen M, Thrane C, Penttilä M. The glucose repressor gene cre1 of Trichoderma: Isolation and expression of a full-length and a truncated mutant form. Molecular and General Genetics MGG 1996, 251(4):451-460.
    • (1996) Molecular and General Genetics MGG , vol.251 , Issue.4 , pp. 451-460
    • Ilmen, M.1    Thrane, C.2    Penttilä, M.3
  • 71
    • 0242581693 scopus 로고    scopus 로고
    • The effects of drugs inhibiting protein secretion in the filamentous fungus Trichoderma reesei
    • 10.1074/jbc.M302372200, 12941955
    • Pakula T, Laxell M, Huuskonen A, Uusitalo J, Saloheimo M, Penttilä M. The effects of drugs inhibiting protein secretion in the filamentous fungus Trichoderma reesei. Journal of Biological Chemistry 2003, 278(45):45011. 10.1074/jbc.M302372200, 12941955.
    • (2003) Journal of Biological Chemistry , vol.278 , Issue.45 , pp. 45011
    • Pakula, T.1    Laxell, M.2    Huuskonen, A.3    Uusitalo, J.4    Saloheimo, M.5    Penttilä, M.6
  • 72
    • 19444370807 scopus 로고    scopus 로고
    • Gcn4p and novel upstream activating sequences regulate targets of the unfolded protein response
    • Patil C, Li H, Walter P. Gcn4p and novel upstream activating sequences regulate targets of the unfolded protein response. PLoS biology 2004, 2:1208-1223.
    • (2004) PLoS biology , vol.2 , pp. 1208-1223
    • Patil, C.1    Li, H.2    Walter, P.3
  • 73
    • 33644889632 scopus 로고    scopus 로고
    • Common features and interesting differences in transcriptional responses to secretion stress in the fungi Trichoderma reesei and Saccharomyces cerevisiae
    • 10.1186/1471-2164-7-32, 1397821, 16504068
    • Arvas M, Pakula T, Lanthaler K, Saloheimo M, Valkonen M, Suortti T, Robson G, Penttilä M. Common features and interesting differences in transcriptional responses to secretion stress in the fungi Trichoderma reesei and Saccharomyces cerevisiae. BMC genomics 2006, 7:32. 10.1186/1471-2164-7-32, 1397821, 16504068.
    • (2006) BMC genomics , vol.7 , pp. 32
    • Arvas, M.1    Pakula, T.2    Lanthaler, K.3    Saloheimo, M.4    Valkonen, M.5    Suortti, T.6    Robson, G.7    Penttilä, M.8
  • 74
    • 14244264610 scopus 로고    scopus 로고
    • Protein production and induction of the unfolded protein response in Trichoderma reesei strain Rut-C30 and its transformant expressing endoglucanase I with a hydrophobic tag
    • 10.1002/bit.20350, 15619324
    • Collén A, Saloheimo M, Bailey M, Penttilä M, Pakula T. Protein production and induction of the unfolded protein response in Trichoderma reesei strain Rut-C30 and its transformant expressing endoglucanase I with a hydrophobic tag. Biotechnology and bioengineering 2005, 89(3):335-344. 10.1002/bit.20350, 15619324.
    • (2005) Biotechnology and bioengineering , vol.89 , Issue.3 , pp. 335-344
    • Collén, A.1    Saloheimo, M.2    Bailey, M.3    Penttilä, M.4    Pakula, T.5
  • 75
    • 0036545614 scopus 로고    scopus 로고
    • Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae
    • 10.1074/mcp.M200001-MCP200, 22229156
    • Griffin T, Gygi S, Ideker T, Rist B, Eng J, Hood L, Aebersold R. Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae. Molecular & Cellular Proteomics 2002, 1(4):323. 10.1074/mcp.M200001-MCP200, 22229156.
    • (2002) Molecular & Cellular Proteomics , vol.1 , Issue.4 , pp. 323
    • Griffin, T.1    Gygi, S.2    Ideker, T.3    Rist, B.4    Eng, J.5    Hood, L.6    Aebersold, R.7
  • 76
    • 0038441481 scopus 로고    scopus 로고
    • Monitoring global messenger RNA changes in externally controlled microarray experiments
    • 10.1038/sj.embor.embor798, 1319154, 12671682
    • Van De Peppel J, Kemmeren P, Van Bakel H, Radonjic M, Van Leenen D, Holstege F. Monitoring global messenger RNA changes in externally controlled microarray experiments. EMBO reports 2003, 4(4):387-393. 10.1038/sj.embor.embor798, 1319154, 12671682.
    • (2003) EMBO reports , vol.4 , Issue.4 , pp. 387-393
    • Van De Peppel, J.1    Kemmeren, P.2    Van Bakel, H.3    Radonjic, M.4    Van Leenen, D.5    Holstege, F.6
  • 77
    • 79956112001 scopus 로고    scopus 로고
    • Interplay between post-transcriptional and post-translational interactions of RNA-binding proteins
    • Mittal N, Scherrer T, Gerber A, Janga S. Interplay between post-transcriptional and post-translational interactions of RNA-binding proteins. Journal of Molecular Biology 2011,
    • (2011) Journal of Molecular Biology
    • Mittal, N.1    Scherrer, T.2    Gerber, A.3    Janga, S.4
  • 78
    • 80052865292 scopus 로고    scopus 로고
    • Glucose depletion inhibits translation initiation via eIF4A loss and subsequent 48S preinitiation complex accumulation, while the pentose phosphate pathway is coordinately up-regulated
    • 10.1091/mbc.E11-02-0153, 3172263, 21795399
    • Castelli L, Lui J, Campbell S, Rowe W, Zeef L, Holmes L, Hoyle N, Bone J, Selley J, Sims P, Ashe M. Glucose depletion inhibits translation initiation via eIF4A loss and subsequent 48S preinitiation complex accumulation, while the pentose phosphate pathway is coordinately up-regulated. Molecular Biology of the Cell 2011, 22(18):3379-3393. 10.1091/mbc.E11-02-0153, 3172263, 21795399.
    • (2011) Molecular Biology of the Cell , vol.22 , Issue.18 , pp. 3379-3393
    • Castelli, L.1    Lui, J.2    Campbell, S.3    Rowe, W.4    Zeef, L.5    Holmes, L.6    Hoyle, N.7    Bone, J.8    Selley, J.9    Sims, P.10    Ashe, M.11
  • 79
    • 34047223024 scopus 로고    scopus 로고
    • Posttranscriptional expression regulation: what determines translation rates
    • 10.1371/journal.pcbi.0030057, 1829480, 17381238
    • Brockmann R, Beyer A, Heinisch J, Wilhelm T. Posttranscriptional expression regulation: what determines translation rates. PLoS Comput Biol 2007, 3(3):e57. 10.1371/journal.pcbi.0030057, 1829480, 17381238.
    • (2007) PLoS Comput Biol , vol.3 , Issue.3
    • Brockmann, R.1    Beyer, A.2    Heinisch, J.3    Wilhelm, T.4
  • 80
    • 79551600149 scopus 로고    scopus 로고
    • Comprehensive quantitative analysis of central carbon and amino-acid metabolism in Saccharomyces cerevisiae under multiple conditions by targeted proteomics
    • Costenoble R, Picotti P, Reiter L, Stallmach R, Heinemann M, Sauer U, Aebersold R. Comprehensive quantitative analysis of central carbon and amino-acid metabolism in Saccharomyces cerevisiae under multiple conditions by targeted proteomics. Molecular Systems Biology 2011, 7.
    • (2011) Molecular Systems Biology , vol.7
    • Costenoble, R.1    Picotti, P.2    Reiter, L.3    Stallmach, R.4    Heinemann, M.5    Sauer, U.6    Aebersold, R.7
  • 81
    • 0141850961 scopus 로고    scopus 로고
    • The Snf1 kinase of the filamentous fungus Hypocrea jecorina phosphorylates regulation-relevant serine residues in the yeast carbon catabolite repressor Mig1 but not in the filamentous fungal counterpart Cre1
    • 10.1016/S1087-1845(03)00082-3, 14516769
    • Cziferszky A, Seiboth B, Kubicek C. The Snf1 kinase of the filamentous fungus Hypocrea jecorina phosphorylates regulation-relevant serine residues in the yeast carbon catabolite repressor Mig1 but not in the filamentous fungal counterpart Cre1. Fungal Genetics and Biology 2003, 40(2):166-175. 10.1016/S1087-1845(03)00082-3, 14516769.
    • (2003) Fungal Genetics and Biology , vol.40 , Issue.2 , pp. 166-175
    • Cziferszky, A.1    Seiboth, B.2    Kubicek, C.3
  • 83
    • 70049110173 scopus 로고    scopus 로고
    • Interpreting expression data with metabolic flux models: predicting Mycobacterium tuberculosis mycolic acid production
    • 10.1371/journal.pcbi.1000489, 2726785, 19714220
    • Colijn C, Brandes A, Zucker J, Lun D, Weiner B, Farhat M, Cheng T, Moody D, Murray M, Galagan J. Interpreting expression data with metabolic flux models: predicting Mycobacterium tuberculosis mycolic acid production. PLoS computational biology 2009, 5(8):e1000489. 10.1371/journal.pcbi.1000489, 2726785, 19714220.
    • (2009) PLoS computational biology , vol.5 , Issue.8
    • Colijn, C.1    Brandes, A.2    Zucker, J.3    Lun, D.4    Weiner, B.5    Farhat, M.6    Cheng, T.7    Moody, D.8    Murray, M.9    Galagan, J.10
  • 84
    • 77952559676 scopus 로고    scopus 로고
    • Metabolic modeling and analysis of the metabolic switch in Streptomyces coelicolor
    • 10.1186/1471-2164-11-202, 2853524, 20338070
    • Alam M, Merlo M, Consortium S, Hodgson D, Wellington E, Takano E, Breitling R. Metabolic modeling and analysis of the metabolic switch in Streptomyces coelicolor. BMC genomics 2010, 11:202. 10.1186/1471-2164-11-202, 2853524, 20338070.
    • (2010) BMC genomics , vol.11 , pp. 202
    • Alam, M.1    Merlo, M.2    Consortium, S.3    Hodgson, D.4    Wellington, E.5    Takano, E.6    Breitling, R.7
  • 86
    • 79951946533 scopus 로고    scopus 로고
    • Microarray data can predict diurnal changes of starch content in the picoalga Ostreococcus
    • 10.1186/1752-0509-5-36, 3056741, 21352558
    • Sorokina O, Corellou F, Dauvillée D, Sorokin A, Goryanin I, Ball S, Bouget F, Millar A. Microarray data can predict diurnal changes of starch content in the picoalga Ostreococcus. BMC Systems Biology 2011, 5:36. 10.1186/1752-0509-5-36, 3056741, 21352558.
    • (2011) BMC Systems Biology , vol.5 , pp. 36
    • Sorokina, O.1    Corellou, F.2    Dauvillée, D.3    Sorokin, A.4    Goryanin, I.5    Ball, S.6    Bouget, F.7    Millar, A.8
  • 87
    • 0037134512 scopus 로고    scopus 로고
    • Elucidation of the Metabolic Fate of Glucose in the Filamentous Fungus Trichoderma reesei Using Expressed Sequence Tag (EST) Analysis and cDNA Microarrays
    • 10.1074/jbc.M107651200, 11825887
    • Chambergo F, Bonaccorsi E, Ferreira A, Ramos A, Ferreira J, Abrahaõ-Neto J, Farah J, El-Dorry H. Elucidation of the Metabolic Fate of Glucose in the Filamentous Fungus Trichoderma reesei Using Expressed Sequence Tag (EST) Analysis and cDNA Microarrays. Journal of Biological Chemistry 2002, 277(16):13983-13988. 10.1074/jbc.M107651200, 11825887.
    • (2002) Journal of Biological Chemistry , vol.277 , Issue.16 , pp. 13983-13988
    • Chambergo, F.1    Bonaccorsi, E.2    Ferreira, A.3    Ramos, A.4    Ferreira, J.5    Abrahaõ-Neto, J.6    Farah, J.7    El-Dorry, H.8
  • 89
    • 8644278216 scopus 로고    scopus 로고
    • Transcriptional response to glucose starvation and functional analysis of a glucose transporter of Neurospora crassa
    • 10.1016/j.fgb.2004.08.009, 15531214
    • Xie X, Wilkinson H, Correa A, Lewis Z, Bell-Pedersen D, Ebbole D. Transcriptional response to glucose starvation and functional analysis of a glucose transporter of Neurospora crassa. Fungal Genetics and Biology 2004, 41(12):1104-1119. 10.1016/j.fgb.2004.08.009, 15531214.
    • (2004) Fungal Genetics and Biology , vol.41 , Issue.12 , pp. 1104-1119
    • Xie, X.1    Wilkinson, H.2    Correa, A.3    Lewis, Z.4    Bell-Pedersen, D.5    Ebbole, D.6
  • 90
    • 69449089723 scopus 로고    scopus 로고
    • More than just orphans: are taxonomically-restricted genes important in evolution?
    • 10.1016/j.tig.2009.07.006, 19716618
    • Khalturin K, Hemmrich G, Fraune S, Augustin R, Bosch T. More than just orphans: are taxonomically-restricted genes important in evolution?. Trends in Genetics 2009, 25(9):404-413. 10.1016/j.tig.2009.07.006, 19716618.
    • (2009) Trends in Genetics , vol.25 , Issue.9 , pp. 404-413
    • Khalturin, K.1    Hemmrich, G.2    Fraune, S.3    Augustin, R.4    Bosch, T.5
  • 91
    • 77949385752 scopus 로고    scopus 로고
    • Bacterial adaptation through distributed sensing of metabolic fluxes
    • Kotte O, Zaugg J, Heinemann M. Bacterial adaptation through distributed sensing of metabolic fluxes. Molecular systems biology 2010, 6.
    • (2010) Molecular systems biology , vol.6
    • Kotte, O.1    Zaugg, J.2    Heinemann, M.3
  • 92
    • 66249105703 scopus 로고    scopus 로고
    • ATP-citrate lyase links cellular metabolism to histone acetylation
    • 10.1126/science.1164097, 2746744, 19461003
    • Wellen K, Hatzivassiliou G, Sachdeva U, Bui T, Cross J, Thompson C. ATP-citrate lyase links cellular metabolism to histone acetylation. Science 2009, 324(5930):1076. 10.1126/science.1164097, 2746744, 19461003.
    • (2009) Science , vol.324 , Issue.5930 , pp. 1076
    • Wellen, K.1    Hatzivassiliou, G.2    Sachdeva, U.3    Bui, T.4    Cross, J.5    Thompson, C.6
  • 93
    • 0343963242 scopus 로고    scopus 로고
    • The fungal acl1 and acl2 genes encode two polypeptides with homology to the N-and C-terminal parts of the animal ATP citrate lyase polypeptide
    • 10.1007/s002940050518, 10794176
    • Nowrousian M, Kuck U, Loser K, Weltring K. The fungal acl1 and acl2 genes encode two polypeptides with homology to the N-and C-terminal parts of the animal ATP citrate lyase polypeptide. Current Genetics 2000, 37(3):189-193. 10.1007/s002940050518, 10794176.
    • (2000) Current Genetics , vol.37 , Issue.3 , pp. 189-193
    • Nowrousian, M.1    Kuck, U.2    Loser, K.3    Weltring, K.4
  • 94
    • 77956795100 scopus 로고    scopus 로고
    • ATP-Citrate Lyase Is Required for Production of Cytosolic Acetyl Coenzyme A and Development in Aspergillus nidulans
    • 10.1128/EC.00080-10, 2901662, 20495057
    • Hynes M, Murray S. ATP-Citrate Lyase Is Required for Production of Cytosolic Acetyl Coenzyme A and Development in Aspergillus nidulans. Eukaryotic Cell 2010, 9(7):1039. 10.1128/EC.00080-10, 2901662, 20495057.
    • (2010) Eukaryotic Cell , vol.9 , Issue.7 , pp. 1039
    • Hynes, M.1    Murray, S.2
  • 95
    • 33745557847 scopus 로고    scopus 로고
    • Nucleocytosolic acetyl-coenzyme a synthetase is required for histone acetylation and global transcription
    • 10.1016/j.molcel.2006.05.040, 16857587
    • Takahashi H, McCaffery J, Irizarry R, Boeke J. Nucleocytosolic acetyl-coenzyme a synthetase is required for histone acetylation and global transcription. Molecular cell 2006, 23(2):207-217. 10.1016/j.molcel.2006.05.040, 16857587.
    • (2006) Molecular cell , vol.23 , Issue.2 , pp. 207-217
    • Takahashi, H.1    McCaffery, J.2    Irizarry, R.3    Boeke, J.4
  • 96
    • 79952011931 scopus 로고    scopus 로고
    • ATP citrate lyase is required for normal sexual and asexual development in Gibberella zeae
    • Son H, Lee J, Park A, Lee Y. ATP citrate lyase is required for normal sexual and asexual development in Gibberella zeae. Fungal Genetics and Biology 2011,
    • (2011) Fungal Genetics and Biology
    • Son, H.1    Lee, J.2    Park, A.3    Lee, Y.4
  • 97
    • 0029090910 scopus 로고
    • Mitochondrial functions mediate cellulase gene expression in Trichoderma reesei
    • 10.1021/bi00033a018, 7654699
    • Abrahao Neto J, Rossini C, El-Gogary S, Henrique-Silva F, Crivellaro O, El-Dorry H. Mitochondrial functions mediate cellulase gene expression in Trichoderma reesei. Biochemistry 1995, 34(33):10456-10462. 10.1021/bi00033a018, 7654699.
    • (1995) Biochemistry , vol.34 , Issue.33 , pp. 10456-10462
    • Abrahao Neto, J.1    Rossini, C.2    El-Gogary, S.3    Henrique-Silva, F.4    Crivellaro, O.5    El-Dorry, H.6
  • 98
    • 77955637339 scopus 로고    scopus 로고
    • Natural functions of mycotoxins and control of their biosynthesis in fungi
    • 10.1007/s00253-010-2657-5, 20495914
    • Reverberi M, Ricelli A, Zjalic S, Fabbri A, Fanelli C. Natural functions of mycotoxins and control of their biosynthesis in fungi. Applied microbiology and biotechnology 2010, 87(3):899-911. 10.1007/s00253-010-2657-5, 20495914.
    • (2010) Applied microbiology and biotechnology , vol.87 , Issue.3 , pp. 899-911
    • Reverberi, M.1    Ricelli, A.2    Zjalic, S.3    Fabbri, A.4    Fanelli, C.5
  • 99
    • 78650208991 scopus 로고    scopus 로고
    • Compartmentalization and molecular traffic in secondary metabolism: A new understanding of established cellular processes
    • 2949687, 20519149
    • Roze L, Chanda A, Linz J. Compartmentalization and molecular traffic in secondary metabolism: A new understanding of established cellular processes. Fungal Genetics and Biology 2010, 48:35-48. 2949687, 20519149.
    • (2010) Fungal Genetics and Biology , vol.48 , pp. 35-48
    • Roze, L.1    Chanda, A.2    Linz, J.3
  • 100
    • 77955825231 scopus 로고    scopus 로고
    • Volatile profiling reveals intracellular metabolic changes in Aspergillus parasiticus: veA regulates branched chain amino acid and ethanol metabolism
    • 10.1186/1471-2091-11-33, 2939540, 20735852
    • Roze L, Chanda A, Laivenieks M, Beaudry R, Artymovich K, Koptina A, Awad D, Valeeva D, Jones A, Linz J. Volatile profiling reveals intracellular metabolic changes in Aspergillus parasiticus: veA regulates branched chain amino acid and ethanol metabolism. BMC biochemistry 2010, 11:33. 10.1186/1471-2091-11-33, 2939540, 20735852.
    • (2010) BMC biochemistry , vol.11 , pp. 33
    • Roze, L.1    Chanda, A.2    Laivenieks, M.3    Beaudry, R.4    Artymovich, K.5    Koptina, A.6    Awad, D.7    Valeeva, D.8    Jones, A.9    Linz, J.10
  • 101
    • 0035076210 scopus 로고    scopus 로고
    • Histone acetylation at promoters is differentially affected by specific activators and repressors
    • 10.1128/MCB.21.8.2726-2735.2001, 86903, 11283252
    • Deckert J, Struhl K. Histone acetylation at promoters is differentially affected by specific activators and repressors. Molecular and Cellular Biology 2001, 21(8):2726. 10.1128/MCB.21.8.2726-2735.2001, 86903, 11283252.
    • (2001) Molecular and Cellular Biology , vol.21 , Issue.8 , pp. 2726
    • Deckert, J.1    Struhl, K.2
  • 102
    • 0001497831 scopus 로고
    • Selective screening methods for the isolation of high yielding cellulase mutants of Trichoderma reesei
    • Montenecourt BS, Eveleigh DE. Selective screening methods for the isolation of high yielding cellulase mutants of Trichoderma reesei. Advances in Chemistry Series 1979, 181:289-301.
    • (1979) Advances in Chemistry Series , vol.181 , pp. 289-301
    • Montenecourt, B.S.1    Eveleigh, D.E.2
  • 103
    • 33750215315 scopus 로고    scopus 로고
    • Transcriptional monitoring of steady state and effects of anaerobic phases in chemostat cultures of the filamentous fungus Trichoderma reesei
    • 10.1186/1471-2164-7-247, 1617104, 17010217
    • Rautio J, Smit B, Wiebe M, Penttilä M, Saloheimo M. Transcriptional monitoring of steady state and effects of anaerobic phases in chemostat cultures of the filamentous fungus Trichoderma reesei. BMC Genomics 2006, 7:247. 10.1186/1471-2164-7-247, 1617104, 17010217.
    • (2006) BMC Genomics , vol.7 , pp. 247
    • Rautio, J.1    Smit, B.2    Wiebe, M.3    Penttilä, M.4    Saloheimo, M.5
  • 104
    • 84889740668 scopus 로고    scopus 로고
    • T. reesei genome sequence version 1.2 Database
    • T. reesei genome sequence version 1.2 Database. , http://genome.jgi-psf.org/trire1/trire1.home.html
  • 105
    • 84889695313 scopus 로고    scopus 로고
    • T. reesei genome sequence version 2 Database
    • T. reesei genome sequence version 2 Database. , http://genome.jgi-psf.org/Trire2/Trire2.home.html
  • 106
    • 0034801198 scopus 로고    scopus 로고
    • Use of matrix-assisted laser desorption/ionization time-of-flight mass mapping and nanospray liquid chromatography/electrospray ionization tandem mass spectrometry sequence tag analysis for high sensitivity identification of yeast proteins separated by two-dimensional gel electrophoresis
    • 10.1002/rcm.424, 11555867
    • Poutanen M, Salusjärvi L, Ruohonen L, Penttilä M, Kalkkinen N. Use of matrix-assisted laser desorption/ionization time-of-flight mass mapping and nanospray liquid chromatography/electrospray ionization tandem mass spectrometry sequence tag analysis for high sensitivity identification of yeast proteins separated by two-dimensional gel electrophoresis. Rapid Communications in Mass Spectrometry 2001, 15(18):1685-1692. 10.1002/rcm.424, 11555867.
    • (2001) Rapid Communications in Mass Spectrometry , vol.15 , Issue.18 , pp. 1685-1692
    • Poutanen, M.1    Salusjärvi, L.2    Ruohonen, L.3    Penttilä, M.4    Kalkkinen, N.5
  • 107
    • 23044512070 scopus 로고    scopus 로고
    • A comparative evaluation of software for the analysis of liquid chromatography-tandem mass spectrometry data from isotope coded affinity tag experiments
    • 10.1002/pmic.200401187, 15952233
    • Moulder R, Filén J, Salmi J, Katajamaa M, Nevalainen O, Oresic M, Aittokallio T, Lahesmaa R, Nyman T. A comparative evaluation of software for the analysis of liquid chromatography-tandem mass spectrometry data from isotope coded affinity tag experiments. Proteomics 2005, 5(11):2748-2760. 10.1002/pmic.200401187, 15952233.
    • (2005) Proteomics , vol.5 , Issue.11 , pp. 2748-2760
    • Moulder, R.1    Filén, J.2    Salmi, J.3    Katajamaa, M.4    Nevalainen, O.5    Oresic, M.6    Aittokallio, T.7    Lahesmaa, R.8    Nyman, T.9
  • 110
    • 0037460964 scopus 로고    scopus 로고
    • Prediction of human protein function according to Gene Ontology categories
    • 10.1093/bioinformatics/btg036, 12651722
    • Jensen L, Gupta R, Staerfeldt H, Brunak S. Prediction of human protein function according to Gene Ontology categories. Bioinformatics 2003, 19(5):635. 10.1093/bioinformatics/btg036, 12651722.
    • (2003) Bioinformatics , vol.19 , Issue.5 , pp. 635
    • Jensen, L.1    Gupta, R.2    Staerfeldt, H.3    Brunak, S.4
  • 111
    • 34248531753 scopus 로고    scopus 로고
    • Locating proteins in the cell using TargetP, SignalP and related tools
    • 10.1038/nprot.2007.131, 17446895
    • Emanuelsson O, Brunak S, von Heijne G, Nielsen H. Locating proteins in the cell using TargetP, SignalP and related tools. Nature protocols 2007, 2(4):953-971. 10.1038/nprot.2007.131, 17446895.
    • (2007) Nature protocols , vol.2 , Issue.4 , pp. 953-971
    • Emanuelsson, O.1    Brunak, S.2    von Heijne, G.3    Nielsen, H.4
  • 112
    • 77149141385 scopus 로고    scopus 로고
    • Discovery of a new tyrosinase-like enzyme family lacking a C-terminally processed domain: production and characterization of an Aspergillus oryzae catechol oxidase
    • 10.1007/s00253-009-2258-3, 19798497
    • Gasparetti C, Faccio G, Arvas M, Buchert J, Saloheimo M, Kruus K. Discovery of a new tyrosinase-like enzyme family lacking a C-terminally processed domain: production and characterization of an Aspergillus oryzae catechol oxidase. Applied microbiology and biotechnology 2010, 86:213-226. 10.1007/s00253-009-2258-3, 19798497.
    • (2010) Applied microbiology and biotechnology , vol.86 , pp. 213-226
    • Gasparetti, C.1    Faccio, G.2    Arvas, M.3    Buchert, J.4    Saloheimo, M.5    Kruus, K.6
  • 113
    • 49549122021 scopus 로고    scopus 로고
    • Saccharomyces Genome Database
    • Saccharomyces Genome Database. , http://www.yeastgenome.org/
  • 115
    • 0033499153 scopus 로고    scopus 로고
    • Analyzing large data sets in reasonable times: solutions for composite optima
    • Goloboff P. Analyzing large data sets in reasonable times: solutions for composite optima. Cladistics 1999, 15(4):415-428.
    • (1999) Cladistics , vol.15 , Issue.4 , pp. 415-428
    • Goloboff, P.1
  • 116
    • 0003645514 scopus 로고    scopus 로고
    • Carbohydrate Active enZYmes Database
    • Carbohydrate Active enZYmes Database. , http://www.cazy.org/
  • 118
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • 10.1093/nar/25.17.3389, 146917, 9254694
    • Altschul S, Madden T, Schaffer A, Zhang J, Zhang Z, Miller W, Lipman D. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 1997, 25(17):3389-3402. 10.1093/nar/25.17.3389, 146917, 9254694.
    • (1997) Nucleic Acids Research , vol.25 , Issue.17 , pp. 3389-3402
    • Altschul, S.1    Madden, T.2    Schaffer, A.3    Zhang, J.4    Zhang, Z.5    Miller, W.6    Lipman, D.7
  • 119
    • 77954266383 scopus 로고    scopus 로고
    • Genomics of protein folding in the endoplasmic reticulum, secretion stress and glycosylation in the aspergilli
    • Geysens S, Whyteside G, Archer D. Genomics of protein folding in the endoplasmic reticulum, secretion stress and glycosylation in the aspergilli. Fungal Genetics and Biology 2009, 46:S121-S140.
    • (2009) Fungal Genetics and Biology , vol.46
    • Geysens, S.1    Whyteside, G.2    Archer, D.3
  • 120
    • 5344244656 scopus 로고    scopus 로고
    • R Foundation for Statistical Computing, Vienna, Austria, [ISBN 3-900051-07-0], R Development Core Team
    • R Development Core Team R A Language and Environment for Statistical Computing 2008, R Foundation for Statistical Computing, Vienna, Austria, [ISBN 3-900051-07-0], R Development Core Team., http://www.R-project.org
    • (2008) R A Language and Environment for Statistical Computing
  • 123
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
    • Smyth G. Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Statistical applications in genetics and molecular biology 2004, 3:1027.
    • (2004) Statistical applications in genetics and molecular biology , vol.3 , pp. 1027
    • Smyth, G.1
  • 124
    • 1142273091 scopus 로고    scopus 로고
    • Strong control, conservative point estimation and simultaneous conservative consistency of false discovery rates: a unified approach
    • Storey J, Taylor J, Siegmund D. Strong control, conservative point estimation and simultaneous conservative consistency of false discovery rates: a unified approach. Journal of the Royal Statistical Society Series B (Statistical Methodology) 2004, 66:187-205.
    • (2004) Journal of the Royal Statistical Society Series B (Statistical Methodology) , vol.66 , pp. 187-205
    • Storey, J.1    Taylor, J.2    Siegmund, D.3
  • 126
    • 64049086955 scopus 로고    scopus 로고
    • The Hypocrea jecorina (syn. Trichoderma reesei) lxr1 gene encodes a D-mannitol dehydrogenase and is not involved in L-arabinose catabolism
    • 10.1016/j.febslet.2009.03.027, 19303876
    • Metz B, de Vries R, Polak S, Seidl V, Seiboth B. The Hypocrea jecorina (syn. Trichoderma reesei) lxr1 gene encodes a D-mannitol dehydrogenase and is not involved in L-arabinose catabolism. FEBS letters 2009, 583(8):1309-1313. 10.1016/j.febslet.2009.03.027, 19303876.
    • (2009) FEBS letters , vol.583 , Issue.8 , pp. 1309-1313
    • Metz, B.1    de Vries, R.2    Polak, S.3    Seidl, V.4    Seiboth, B.5
  • 127
    • 0142153888 scopus 로고    scopus 로고
    • D-Xylose metabolism in Hypocrea jecorina: Loss of the xylitol dehydrogenase step can be partially compensated for by lad1-encoded L-arabinitol-4-dehydrogenase
    • 10.1128/EC.2.5.867-875.2003, 219359, 14555469
    • Seiboth B, Hartl L, Pail M, Kubicek C. D-Xylose metabolism in Hypocrea jecorina: Loss of the xylitol dehydrogenase step can be partially compensated for by lad1-encoded L-arabinitol-4-dehydrogenase. Eukaryotic Cell 2003, 2(5):867. 10.1128/EC.2.5.867-875.2003, 219359, 14555469.
    • (2003) Eukaryotic Cell , vol.2 , Issue.5 , pp. 867
    • Seiboth, B.1    Hartl, L.2    Pail, M.3    Kubicek, C.4
  • 128
    • 35748970166 scopus 로고    scopus 로고
    • The d-xylose reductase of Hypocrea jecorina is the major aldose reductase in pentose and d-galactose catabolism and necessary for β-galactosidase and cellulase induction by lactose
    • 10.1111/j.1365-2958.2007.05953.x, 17924946
    • Seiboth B, Gamauf C, Pail M, Hartl L, Kubicek C. The d-xylose reductase of Hypocrea jecorina is the major aldose reductase in pentose and d-galactose catabolism and necessary for β-galactosidase and cellulase induction by lactose. Molecular microbiology 2007, 66(4):890-900. 10.1111/j.1365-2958.2007.05953.x, 17924946.
    • (2007) Molecular microbiology , vol.66 , Issue.4 , pp. 890-900
    • Seiboth, B.1    Gamauf, C.2    Pail, M.3    Hartl, L.4    Kubicek, C.5
  • 130
    • 0037167184 scopus 로고    scopus 로고
    • The Hypocrea jecorina gal10 (uridine 5'-diphosphate-glucose 4-epimerase-encoding) gene differs from yeast homologues in structure, genomic organization and expression
    • 10.1016/S0378-1119(02)00834-X, 12242021
    • Seiboth B, Karaffa L, Sándor E, Kubicek C. The Hypocrea jecorina gal10 (uridine 5'-diphosphate-glucose 4-epimerase-encoding) gene differs from yeast homologues in structure, genomic organization and expression. Gene 2002, 295:143-149. 10.1016/S0378-1119(02)00834-X, 12242021.
    • (2002) Gene , vol.295 , pp. 143-149
    • Seiboth, B.1    Karaffa, L.2    Sándor, E.3    Kubicek, C.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.