The transcriptional coactivators SAGA, SWI/SNF, and mediator make distinct contributions to activation of glucose-repressed genes

Journal of Biological Chemistry

Volumn 283, Issue 48, 2008, Pages 33101-33109

  Biddick, Rhiannon K ^a   Law, G Lynn ^a   Chin, Kevin Khaw Beng ^a,b   Young, Elton T ^a  

^a UNIVERSITY OF WASHINGTON   (United States)

^b NANYANG TECHNOLOGICAL UNIVERSITY   (Singapore)

Author keywords

[No Author keywords available]

Indexed keywords

CHROMOSOMES; EMPLOYMENT; GENES; GLUCOSE;

CHROMATIN STRUCTURES; CO ACTIVATORS; COMPREHENSIVE STUDIES; GENE REGULATIONS; OVEREXPRESSION; REGULATED GENES; SWI/SNF;

CHEMICAL ACTIVATION;

GLUCOSE REGULATED PROTEIN; PROTEIN ADH2; PROTEIN FBP1; PROTEIN SWI; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR ADR1; TRANSCRIPTION FACTOR CAT8; TRANSCRIPTION FACTOR SAGA; TRANSCRIPTION FACTOR SNF; UNCLASSIFIED DRUG;

ARTICLE; CHROMATIN ASSEMBLY AND DISASSEMBLY; CONTROLLED STUDY; GENE ACTIVATION; GENE CONTROL; GENE EXPRESSION; GENE OVEREXPRESSION; NONHUMAN; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN FUNCTION; TRANSCRIPTION INITIATION;

ALCOHOL DEHYDROGENASE; CHROMATIN; CHROMATIN ASSEMBLY AND DISASSEMBLY; CHROMOSOMAL PROTEINS, NON-HISTONE; GENE EXPRESSION REGULATION, FUNGAL; GLUCOSE; RESPONSE ELEMENTS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; TRANS-ACTIVATORS;

EID: 57749106706     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M805258200     Document Type: Article

References (48)

1. Ptashne, M. (2005) Trends Biochem. Sci. 30, 275-279
2. Krebs, J. E., Kuo, M. H., Allis, C. D., and Peterson, C. L. (1999) Genes Dev. 13, 1412-1421
3. Adkins, M. W., Williams, S. K., Linger, J., and Tyler, J. K. (2007) Mol. Cell. Biol. 27, 6372-6382
4. Barbaric, S., Luckenbach, T., Schmid, A., Blaschke, D., Horz, W., and Korber, P. (2007) J. Biol. Chem. 282, 27610-27621
5. Nourani, A., Utley, R. T., Allard, S., and Cote, J. (2004) EMBO J. 23, 2597-2607
6. Steger, D. J., Haswell, E. S., Miller, A. L., Wente, S. R., and O'Shea, E. K. (2003) Science 299, 114-116
7. Bhaumik, S. R., and Green, M. R. (2002) Mol. Cell. Biol. 22, 7365-7371
8. Bryant, G. O., and Ptashne, M. (2003) Mol. Cell 11, 1301-1309
9. Lemieux, K., and Gaudreau, L. (2004) EMBO J. 23, 4040-4050
10. Mitra, D., Parnell, E. J., Landon, J. W., Yu, Y., and Stillman, D. J. (2006) Mol. Cell. Biol. 26, 4095-4110
11. Young, E. T., Dombek, K. M., Tachibana, C., and Ideker, T. (2003) J. Biol. Chem. 278, 26146-26158
12. Biddick, R. K., Law, G. L., and Young, E. T. (2008) PLoS ONE 3, e1436
13. Tachibana, C., Yoo, J. Y., Tagne, J. B., Kacherovsky, N., Lee, T. I., and Young, E. T. (2005) Mol. Cell. Biol. 25, 2138-2146
14. Zaragoza, O., Vincent, O., and Gancedo, J. M. (2001) Biochem. J. 359, 193-201
15. Agricola, E., Verdone, L., Xella, B., Di Mauro, E., and Caserta, M. (2004) Biochemistry 43, 8878-8884
16. Tachibana, C., Biddick, R., Law, G. L., and Young, E. T. (2007) J. Biol. Chem. 282, 37308-37315
17. Guldener, U., Heck, S., Fielder, T., Beinhauer, J., and Hegemann, J. H. (1996) Nucleic Acids Res. 24, 2519-2524
18. Knop, M., Siegers, K., Pereira, G., Zachariae, W., Winsor, B., Nasmyth, K., and Schiebel, E. (1999) Yeast 15, 963-972
19. Dombek, K. M., and Young, E. T. (1997) Mol. Cell. Biol. 17, 1450-1458
20. del Olmo, M. L., Sogo, J. M., Franco, L., and Perez-Ortin, J. E. (1993) Yeast 9, 1229-1240
21. Burns, L. G., and Peterson, C. L. (1997) Mol. Cell. Biol. 17, 4811-4819
22. Cosma, M. P., Tanaka, T., and Nasmyth, K. (1999) Cell 97, 299-311
23. Gregory, P. D., Schmid, A., Zavari, M., Munsterkotter, M., and Horz, W. (1999) EMBO J. 18, 6407-6414
24. Nowak, D. E., Tian, B., and Brasier, A. R. (2005) BioTechniques 39, 715-725
25. Verdone, L., Cesari, F., Denis, C. L., Di Mauro, E., and Caserta, M. (1997) J. Biol. Chem. 272, 30828-30834
26. Reinke, H., Gregory, P. D., and Horz, W. (2001) Mol Cell 7, 529-538
27. Verdone, L., Camilloni, G., Di Mauro, E., and Caserta, M. (1996) Mol. Cell. Biol. 16, 1978-1988
28. Verdone, L., Wu, J., van Riper, K., Kacherovsky, N., Vogelauer, M., Young, E. T., Grunstein, M., Di Mauro, E., and Caserta, M. (2002) EMBO J. 21, 1101-1111
29. Daniel, J. A., and Grant, P. A. (2007) Mutat. Res. 618, 135-148
30. Bhaumik, S. R., and Green, M. R. (2001) Genes Dev. 15, 1935-1945
31. Sterner, D. E., Grant, P. A., Roberts, S. M., Duggan, L. J., Belotserkovskaya, R., Pacella, L. A., Winston, F., Workman, J. L., and Berger, S. L. (1999) Mol. Cell. Biol. 19, 86-98
32. Muse, G. W., Gilchrist, D. A., Nechaev, S., Shah, R., Parker, J. S., Grissom, S. F., Zeitlinger, J., and Adelman, K. (2007) Nat. Genet. 39, 1507-1511
33. Thompson, C. M., and Young, R. A. (1995) Proc. Natl. Acad. Sci. U. S. A. 92, 4587-4590
34. Lewis, B. A., and Reinberg, D. (2003) J. Cell Sci. 116, 3667-3675
35. He, Q., Battistella, L., and Morse, R. H. (2008) J. Biol. Chem. 283, 5276-5286
36. Linder, T., Zhu, X., Baraznenok, V., and Gustafsson, C. M. (2006) Biochem. Biophys. Res. Commun. 349, 948-953
37. Takagi, Y., Calero, G., Komori, H., Brown, J. A., Ehrensberger, A. H., Hudmon, A., Asturias, F., and Kornberg, R. D. (2006) Mol Cell 23, 355-364
38. Yu, Y., Eriksson, P., and Stillman, D. J. (2000) Mol. Cell. Biol. 20, 2350-2357
39. Young, E. T., Tachibana, C., Chang, H. W., Dombek, K. M., Arms, E. M., and Biddick, R. (2008) Mol. Cell. Biol. 28, 2509-2516
40. Tu, B. P., Kudlicki, A., Rowicka, M., and McKnight, S. L. (2005) Science 310, 1152-1158
41. Geng, F., and Laurent, B. C. (2004) EMBO J. 23, 127-137
42. VanDemark, A. P., Kasten, M. M., Ferris, E., Heroux, A., Hill, C. P., and Cairns, B. R. (2007) Mol. Cell 27, 817-828
43. Qiu, H., Hu, C., Yoon, S., Natarajan, K., Swanson, M. J., and Hinnebusch, A. G. (2004) Mol. Cell. Biol. 24, 4104-4117
44. Fan, X., Chou, D. M., and Struhl, K. (2006) Nat. Struct. Mol. Biol. 13, 117-120
45. Govind, C. K., Yoon, S., Qiu, H., Govind, S., and Hinnebusch, A. G. (2005) Mol. Cell. Biol. 25, 5626-5638
46. Swanson, M. J., Qiu, H., Sumibcay, L., Krueger, A., Kim, S. J., Natarajan, K., Yoon, S., and Hinnebusch, A. G. (2003) Mol. Cell. Biol. 23, 2800-2820
47. Irani, M., Taylor, W. E., and Young, E. T. (1987) Mol. Cell. Biol. 7, 1233-1241
48. Kim, S. J., Swanson, M. J., Qiu, H., Govind, C. K., and Hinnebusch, A. G. (2005) Mol. Cell. Biol. 25, 11171-11183