Classification of Salmonella enterica serotypes from Australian poultry using repetitive sequence-based PCR

Journal of Applied Microbiology

Volumn 112, Issue 1, 2012, Pages 185-196

  Chenu, J W ^a   Cox, J M ^b   Pavic, A ^a  

^a Australia   (Australia)

^b UNIVERSITY OF NEW SOUTH WALES   (Australia)

Author keywords

Australia; Molecular epidemiology; Poultry; Rep PCR; Salmonella; Serotyping

Indexed keywords

COST BENEFIT ANALYSIS; COST EFFECTIVENESS; DATABASE SYSTEMS; POLYMERASE CHAIN REACTION;

AUSTRALIA; DNA FINGERPRINTS; KULLBACK-LEIBLER; MOLECULAR EPIDEMIOLOGY; PALINDROMIC; REP-PCR; SALMONELLA ENTERICA; SEROGROUPS; SEROTYPES; SEROTYPING;

SALMONELLA;

COST-BENEFIT ANALYSIS; DATABASE; FLAGELLATE; GENETIC ANALYSIS; POLYMERASE CHAIN REACTION; POULTRY;

ARTICLE; AUSTRALIA; BACTERIAL STRAIN; BACTERIUM ISOLATE; CLASSIFICATION; CONTROLLED STUDY; COST; DNA EXTRACTION; NONHUMAN; POLYMERASE CHAIN REACTION; POULTRY; SALMONELLA ENTERICA; SEROTYPE; SEROTYPING;

AUSTRALIA;

SALMONELLA; SALMONELLA ENTERICA;

EID: 83555178454     PISSN: 13645072     EISSN: 13652672     Source Type: Journal    
DOI: 10.1111/j.1365-2672.2011.05172.x     Document Type: Article

References (43)

1. Anderson, P.N., Hume, M.E., Byrd, J.A., Hernandez, C., Stevens, S.M., Stringfellow, K. and Caldwell, D.J. (2010) Evaluation of a repetitive extragenic palindromic-polymerase chain reaction and denaturing gradient gel electrophoresis in identifying Salmonella serotypes isolated from processing turkey. Poult Sci 89, 1293-1300.
2. Arzey, G. (2005) Guidelines - Joint NSW/Victoria Salmonella Enteritidis Monitoring and Accreditation Program. Australia: Elizabeth Macarthur Institute, Menangle NSW Department of Primary Industries.
3. Baggesen, D.L., Sørensen, G., Nielsen, E.M. and Wegener, H.C. (2010). Phage typing of Salmonella Typhimurium - is it still a useful tool for surveillance and outbreak investigation? Euro Surveill 15, 19471, Accessed 26 March 2011.
4. Batz, M.B., Doyle, M.P., Morris, G. Jr, Painter, J., Singh, R., Tauxe, R.V., Taylor, M.R. and Wong, D.M. (2005) Attributing illness to food. Emerg Infect Dis 11, 993-999.
5. Beltran, P., Musser, J.M., Helmuth, R., Farmer, J.J. III, Frerichs, W.M., Wachsmuth, I.K., Ferris, K., McWhorter, A.C. et al. (1988) Toward a population genetic analysis of Salmonella: genetic diversity and relationships among strains of serotypes S. choleraesuis, S. derby, S. dublin, S. enteriditis, S. heidelberg, S. infantis, S. newport, and S. typhimurium. Proc Natl Acad Sci 85, 7753-7757.
6. Ben-Darif, E., de Pinna, E., Threlfall, E.J. and Bolton, F.J. (2010) Comparison of a semi-automated rep-PCR system and multi-locus sequence typing for differentiation of Salmonella enterica isolates. J Microbiol Methods 81, 11-16.
7. Braden, C.R. (2006) Salmonella enterica serotype Enteritidis and eggs: a national epidemic in the United States. Clin Infect Dis 43, 512-517.
8. Brenner, F.W., Villar, R.G., Angulo, F.J., Tauxe, R. and Swaminathan, B. (2000) Salmonella nomenclature. J Clin Microbiol 38, 2465-2467.
9. Callaway, T.R., Edrington, T.S., Anderson, R.C., Byrd, J.A. and Nisbet, D.J. (2008) Gastrointestinal microbial ecology and the safety of our food supply as related to Salmonella. J Anim Sci 86, E163-E172.
10. CDC/FoodNet (Centers for Disease Control and Prevention/FoodNet) (2010) FoodNet Facts and Figures - Number of infections and incidence per 100, 000 persons. Accessed 26 March 2011.
11. Cox, J. (2000) Salmonella. In Encyclopedia of Food Microbiology vol. III ed. Robinson, R.K., Batt, C.A. and Patel, P.D. pp. 1928-1937 California: Academic Press.
12. Cox, J.M. and Pavic, A. (2010) Advances in enteropathogen control in poultry production. J Appl Microbiol 108, 745-755.
13. Davos, D. (2009) (ed.) Australian Salmonella Reference Centre 2009 Annual Report. Adelaide, South Australia: Institute of Medical and Veterinary Science.
14. Dundas, N., Leos, N.K., Mitui, M., Revell, P. and Rogers, B.B. (2008) Comparison of automated nucleic acid extraction methods with manual extraction. J Mol Diagn 10, 311-316.
15. EFSA, (2010). Analysis of the baseline survey on the prevalence of Campylobacter in broiler batches and of Campylobacter and Salmonella on broiler carcasses in the EU, 2008. Scientific Report of the EFSA. EFSA J 2010; 8:1503. Accessed 4 February 2011.
16. FAO/WHO (2002) Risk assessments of Salmonella in eggs and broiler chickens. In Microbiological Risk Assessment Series 2. Geneva: World Health Organization/Food and Agriculture Organization of the United Nations.
17. FAO/WHO (2009) Salmonella and Campylobacter in chicken meat. In Microbiological Risk Assessment Series 19. Geneva: World Health Organization/Food and Agriculture Organization of the United Nations.
18. Foley, S.L., Zhao, S. and Walker, R.D. (2007) Comparison of molecular typing methods for the differentiation of Salmonella foodborne pathogens. Foodborne Pathog Dis 4, 253-276.
19. Foley, S.L., Lynne, A.M. and Nayak, R. (2009) Molecular typing methodologies for microbial source tracking and epidemiological investigations of Gram-negative bacterial foodborne pathogens. Infect Gene Evol 9, 430-440.
20. FSANZ (2010) Baseline survey on the prevalence and concentration of Salmonella and Campylobacter on chicken meat on-farm and at primary processing. Accessed on 4 February 2011.
21. Gan, E., Smooker, P.M. and Coloe, P.J. (2010) Molecular typing of Salmonella enterica serovar Sofia in Australia by pulsed-field gel electrophoresis and repetitive element PCR typing. J Appl Microbiol 109, 292-303.
22. Gerstel, U. and Romling, U. (2001) Oxygen tension and nutrient starvation are major signals that regulate agfD promoter activity and expression of the multicellular morphotype in Salmonella Typhimurium. Environ Microbiol 3, 638-648.
23. Grimont, P.A.D. and Weill, F.X. (2007) Antigenic Formulae of the Salmonella serovars 9th Ed. WHO Collaborating Center for Reference and Research on Salmonella. Paris, France: Insitut Pasteur.
24. Guibourdenche, M., Roggentin, P., Mikoleit, M., Fields, P.I., Bockemühl, J., Grimont, P.A.D. and Weill, F.X. (2010) Supplement 2003-2007 (No. 47) to the White-Kauffman-Le Minor scheme. Res Microbiol 161, 26-29.
25. Harrington, C.S., Lanser, J.A., Manning, P.A. and Murray, C.J. (1991) Epidemiology of Salmonella Sofia in Australia. Appl Environ Microbiol 57, 223-227.
26. Healy, M., Huong, J., Bittner, T., Lising, M., Frye, S., Raza, S., Schrock, R., Manry, J. et al. (2005) Microbial DNA typing by automated repetitive-sequence-based PCR. J Clin Microbiol 43, 199-207.
27. Hyeon, J.Y., Chon, J.W., Hwang, I.G., Kwak, H.S., Kim, M.S., Kim, S.K., Choi, I.S., Song, C.S. et al. (2011) Prevalence, antibiotic resistance, and molecular characterization of Salmonella serovars in retail meat products. J Food Prot 74, 161-166.
28. International Organization for Standardization (2002) ISO 6579:2002. Microbiology of Food and Animal Feeding Stuffs - Horizontal Method for the Detection of Salmonella spp. Geneva, Switzerland: International Standards Organisation.
29. Kilic, A., Bedir, O., Kocak, N., Levent, B., Eyigun, C.P., Tekbas, O.F., Gorenek, L., Baylan, O. et al. (2010) Analysis of an outbreak of Salmonella Enteritidis by repetitive-sequence-based PCR and pulsed-field gel electrophoresis. Intern Med 49, 31-36.
30. Loens, K., Bergs, K., Ursi, D., Goossens, H. and Ieven, N. (2007) Evaluation of NucliSens EasyMAG for automated nucleic acid extraction from various clinical specimens. J Clin Microbiol 45, 421-425.
31. Liljebjelke, K.A., Hofacre, C.L., Liu, T., White, D.G., Ayers, S., Young, S. and Maurer, J.J. (2005) Vertical and horizontal transmission of Salmonella within integrated broiler production system. Foodborne Pathog Dis 2, 90-102.
32. Mellor, G.E., Duffy, L.L., Dykes, G.A. and Fegan, N. (2010) Relative prevalence of Salmonella Sofia on broiler chickens pre- and post-processing in Australia. Poult Sci 89, 1544-1548.
33. TM) rep-PCR. Proceedings of the 20th Australian Poultry Science Symposium, 2009, Sydney, New South Wales, Australia, 9-11th February 2009.
34. Pavic, A., Groves, P.J. and Cox, J.M. (2010) Utilization of a novel autologous killed tri-vaccine (serogroups B [Typhimurium], C [Mbandaka] and E [Orion]) for Salmonella control in commercial poultry breeders. Avian Path 39, 31-39.
35. Popoff, M.Y., Miras, I., Coynault, C., Lasselin, C. and Pardon, P. (1984) Molecular relatedness between virulence plasmids of Salmonella serotypes Typhimurium and Dublin and large plasmids of other Salmonella serotypes. Ann Mircrobiol (Inst Pasteur) 135A, 389-398.
36. Scott, T.M., Rose, J.B., Jenkins, T.M., Farrah, S.R. and Lukasik, J. (2002) Microbial source tracking: current methodology and future directions. Appl Environ Microbiol 68, 5796-5803.
37. Threlfall, E.J. and Frost, J.A. (1990) The identification, typing and fingerprinting of Salmonella: laboratory aspects and epidemiological applications. J Appl Bacteriol 68, 5-16.
38. United States Department of Agriculture/Food Safety Inspection Service (USDA/FSIS) (2008) Improvements for poultry slaughter inspection - Technical report. Appendix H - Data analyses supporting proposed performance standards.
39. Versalovic, J. and Lupski, J.R. (2002) Molecular detection and genotyping of pathogens: more accurate and rapid answers. Trends Microbiol 10, S15-S21.
40. Versalovic, J., Schneider, M., de Bruijn, F.J. and Lupski, J.R. (1994) Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction. Methods Mol Cell Biol 5, 25-40.
41. Weigel, R.M., Qiao, B., Teferedegne, B., Suh, D.K., Barber, D.A., Isaacson, R.E. and White, B.A. (2004) Comparison of pulsed field gel electrophoresis and repetitive sequence polymerase chain reaction as genotyping methods for detection of genetic diversity and inferring transmission of Salmonella. Vet Microbiol 100, 205-217.
42. Wise, M.G., Siragusa, G.R., Plumblee, J., Healy, M., Cray, P. and Seal, B.S. (2009) Predicting Salmonella enterica serotypes by repetitive sequence-based PCR. J Microbiol Methods 76, 18-24.
43. Yan, S.S., Pendrak, M.L., Abela-Ridder, B., Punderson, J.W., Fedorko, D.P. and Foley, S.L. (2004) An overview of Salmonella typing: public health perspectives. Clin Appl Immunol Revs 4, 189-204.