-
1
-
-
0039812510
-
Heme-Containing Oxygenases
-
Sono, M., Roach, M. P., Coulter, E. D., and Dawson, J. H. (1996) Heme-Containing Oxygenases Chem. Rev. 96, 2841-2888
-
(1996)
Chem. Rev.
, vol.96
, pp. 2841-2888
-
-
Sono, M.1
Roach, M.P.2
Coulter, E.D.3
Dawson, J.H.4
-
2
-
-
27544499713
-
Biochemical and medical aspects of the indoleamine 2,3-dioxygenase- initiated L-tryptophan metabolism
-
DOI 10.1016/j.bbrc.2005.09.032, PII S0006291X05020449
-
Takikawa, O. (2005) Biochemical and medical aspects of the indoleamine 2,3-dioxygenase-initiated l-tryptophan metabolism Biochem. Biophys. Res. Commun. 338, 12-19 (Pubitemid 41540531)
-
(2005)
Biochemical and Biophysical Research Communications
, vol.338
, Issue.1
, pp. 12-19
-
-
Takikawa, O.1
-
3
-
-
78651013065
-
The Conversion of Tryptophan to Kynurenine in Liver: I. the Coupled Tryptophan Peroxidase-Oxidase System Forming Formylkynurenine
-
Knox, W. E. and Mehler, A. H. (1950) The Conversion of Tryptophan to Kynurenine in Liver: I. The Coupled Tryptophan Peroxidase-Oxidase System Forming Formylkynurenine J. Biol. Chem. 187, 419-430
-
(1950)
J. Biol. Chem.
, vol.187
, pp. 419-430
-
-
Knox, W.E.1
Mehler, A.H.2
-
4
-
-
16244408626
-
Inhibition of indoleamine 2,3-dioxygenase, an immunoregulatory target of the cancer suppression gene Bin1, potentiates cancer chemotherapy
-
DOI 10.1038/nm1196
-
Muller, A. J., DuHadaway, J. B., Donover, P. S., Sutanto-Ward, E., and Prendergast, G. C. (2005) Inhibition of indoleamine 2,3-dioxygenase, an immunoregulatory target of the cancer suppression gene Bin1, potentiates cancer chemotherapy Nat. Med. 11, 312-319 (Pubitemid 40460560)
-
(2005)
Nature Medicine
, vol.11
, Issue.3
, pp. 312-319
-
-
Muller, A.J.1
DuHadaway, J.B.2
Donover, P.S.3
Sutanto-Ward, E.4
Prendergast, G.C.5
-
5
-
-
0033519278
-
Inhibition of T cell proliferation by macrophage tryptophan catabolism
-
DOI 10.1084/jem.189.9.1363
-
Munn, D. H., Shafizadeh, E., Attwood, J. T., Bondarev, I., Pashine, A., and Mellor, A. L. (1999) Inhibition of T Cell Proliferation by Macrophage Tryptophan Catabolism J. Exp. Med. 189, 1363-1372 (Pubitemid 29227522)
-
(1999)
Journal of Experimental Medicine
, vol.189
, Issue.9
, pp. 1363-1372
-
-
Munn, D.H.1
Shafizadeh, E.2
Attwood, J.T.3
Bondarev, I.4
Pashine, A.5
Mellor, A.L.6
-
6
-
-
0038215374
-
Tolerance, DCs and tryptophan: Much ado about IDO
-
DOI 10.1016/S1471-4906(03)00072-3
-
Grohmann, U., Fallarino, F., and Puccetti, P. (2003) Tolerance, DCs and tryptophan: Much ado about IDO Trends Immunol. 24, 242-248 (Pubitemid 36555962)
-
(2003)
Trends in Immunology
, vol.24
, Issue.5
, pp. 242-248
-
-
Grohmann, U.1
Fallarino, F.2
Puccetti, P.3
-
7
-
-
0037056234
-
Indoleamine 2,3-dioxygenase contributes to tumor cell evasion of T cell-mediated rejection
-
DOI 10.1002/ijc.10645
-
Friberg, M., Jennings, R., Alsarraj, M., Dessureault, S., Cantor, A., Extermann, M., Mellor, A. L., Munn, D. H., and Antonia, S. J. (2002) Indoleamine 2,3-dioxygenase contributes to tumor cell evasion of T cell-mediated rejection Int. J. Cancer 101, 151-155 (Pubitemid 34970907)
-
(2002)
International Journal of Cancer
, vol.101
, Issue.2
, pp. 151-155
-
-
Friberg, M.1
Jennings, R.2
Alsarraj, M.3
Dessureault, S.4
Cantor, A.5
Extermann, M.6
Mellor, A.L.7
Munn, D.H.8
Antonia, S.J.9
-
8
-
-
0142137237
-
Evidence for a tumoral immune resistance mechanism based on tryptophan degradation by indoleamine 2,3-dioxygenase
-
DOI 10.1038/nm934
-
Uyttenhove, C., Pilotte, L., Theate, I., Stroobant, V., Colau, D., Parmentier, N., Boon, T., and Van den Eynde, B. J. (2003) Evidence for a tumoral immune resistance mechanism based on tryptophan degradation by indoleamine 2,3-dioxygenase Nat. Med. 9, 1269-1274 (Pubitemid 37279849)
-
(2003)
Nature Medicine
, vol.9
, Issue.10
, pp. 1269-1274
-
-
Uyttenhove, C.1
Pilotte, L.2
Theate, I.3
Stroobant, V.4
Colau, D.5
Parmentier, N.6
Boon, T.7
Van Den Eynde, B.J.8
-
9
-
-
33846315050
-
Molecular insights into substrate recognition and catalysis by tryptophan 2,3-dioxygenase
-
DOI 10.1073/pnas.0610007104
-
Forouhar, F., Anderson, J. L. R., Mowat, C. G., Vorobiev, S. M., Hussain, A., Abashidze, M., Bruckmann, C., Thackray, S. J., Seetharaman, J., Tucker, T., Xiao, R., Ma, L.-C., Zhao, L., Acton, T. B., Montelione, G. T., Chapman, S. K., and Tong, L. (2007) Molecular insights into substrate recognition and catalysis by tryptophan 2,3-dioxygenase Proc. Natl. Acad. Sci. U.S.A. 104, 473-478 (Pubitemid 46123050)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.2
, pp. 473-478
-
-
Forouhar, F.1
Anderson, J.L.R.2
Mowat, C.G.3
Vorobiev, S.M.4
Hussain, A.5
Abashidze, M.6
Bruckmann, C.7
Thackray, S.J.8
Seetharaman, J.9
Tucker, T.10
Xiao, R.11
Ma, L.-C.12
Zhao, L.13
Acton, T.B.14
Montelione, G.T.15
Chapman, S.K.16
Tong, L.17
-
10
-
-
33846043574
-
Crystal structure and mechanism of tryptophan 2,3-dioxygenase, a heme enzyme involved in tryptophan catabolism and in quinolinate biosynthesis
-
DOI 10.1021/bi0620095
-
Zhang, Y., Kang, S. A., Mukherjee, T., Bale, S., Crane, B. R., Begley, T. P., and Ealick, S. E. (2007) Crystal structure and mechanism of tryptophan 2,3-dioxygenase, a heme enzyme involved in tryptophan catabolism and in quinolinate biosynthesis Biochemistry 46, 145-155 (Pubitemid 46067744)
-
(2007)
Biochemistry
, vol.46
, Issue.1
, pp. 145-155
-
-
Zhang, Y.1
Kang, S.A.2
Mukherjee, T.3
Bale, S.4
Crane, B.R.5
Begley, T.P.6
Ealick, S.E.7
-
12
-
-
37849002571
-
Human Tryptophan Dioxygenase: A Comparison to Indoleamine 2,3-Dioxygenase
-
Batabyal, D. and Yeh, S. R. (2007) Human Tryptophan Dioxygenase: A Comparison to Indoleamine 2,3-Dioxygenase J. Am. Chem. Soc. 129, 15690-15701
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 15690-15701
-
-
Batabyal, D.1
Yeh, S.R.2
-
13
-
-
77957933059
-
The first step in the dioxygenation reaction carried out by tryptophan dioxygenase and indoleamine 2,3- dioxygenase as revealed by QM-MM studies
-
Capece, L., Lewis-Ballester, A., Batabyal, D., Di Russo, N., Yeh, S. R., Estrin, D. A., and Marti, M. A. (2010) The first step in the dioxygenation reaction carried out by tryptophan dioxygenase and indoleamine 2,3- dioxygenase as revealed by QM-MM studies J. Biol. Inorg. Chem. 15, 811-823
-
(2010)
J. Biol. Inorg. Chem.
, vol.15
, pp. 811-823
-
-
Capece, L.1
Lewis-Ballester, A.2
Batabyal, D.3
Di Russo, N.4
Yeh, S.R.5
Estrin, D.A.6
Marti, M.A.7
-
14
-
-
83455211508
-
The Complete Reaction Mechanism of Indoleamine 2,3-Dioxygenase As Revealed by QM/MM Simulations
-
manuscript under revision
-
Capece, L., Lewis-Ballester, A., Yeh, S.-R., Estrin, D. A., and Marti, M. A. (2011) The Complete Reaction Mechanism of Indoleamine 2,3-Dioxygenase As Revealed by QM/MM Simulations. J. Phys. Chem. B, manuscript under revision.
-
(2011)
J. Phys. Chem. B
-
-
Capece, L.1
Lewis-Ballester, A.2
Yeh, S.-R.3
Estrin, D.A.4
Marti, M.A.5
-
15
-
-
70349084620
-
Inhibitory Substrate Binding Site of Human Indoleamine 2,3-Dioxygenase
-
Lu, C., Lin, Y., and Yeh, S.-R. (2009) Inhibitory Substrate Binding Site of Human Indoleamine 2,3-Dioxygenase J. Am. Chem. Soc. 131, 12866-12867
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 12866-12867
-
-
Lu, C.1
Lin, Y.2
Yeh, S.-R.3
-
16
-
-
77957934484
-
Substrate stereo-specificity in tryptophan dioxygenase and indoleamine 2,3-dioxygenase
-
Capece, L., Arrar, M., Roitberg, A. E., Yeh, S.-R., Marti, M. A., and Estrin, D. A. (2010) Substrate stereo-specificity in tryptophan dioxygenase and indoleamine 2,3-dioxygenase Proteins: Struct., Funct., Bioinf. 78, 2961-2972
-
(2010)
Proteins: Struct., Funct., Bioinf.
, vol.78
, pp. 2961-2972
-
-
Capece, L.1
Arrar, M.2
Roitberg, A.E.3
Yeh, S.-R.4
Marti, M.A.5
Estrin, D.A.6
-
17
-
-
70350494610
-
Substrate-Protein Interaction in Human Tryptophan Dioxygenase: The Critical Role of H76
-
Batabyal, D. and Yeh, S.-R. (2009) Substrate-Protein Interaction in Human Tryptophan Dioxygenase: The Critical Role of H76 J. Am. Chem. Soc. 131, 3260-3270
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 3260-3270
-
-
Batabyal, D.1
Yeh, S.-R.2
-
18
-
-
0014962432
-
The Oxygenated Form of l-Tryptophan 2,3-Dioxygenase as Reaction Intermediate
-
Ishimura, Y., Nozaki, M., Hayaishi, O., Nakamura, T., Tamura, M., and Yamazaki, I. (1970) The Oxygenated Form of l-Tryptophan 2,3-Dioxygenase as Reaction Intermediate J. Biol. Chem. 245, 3593-3602
-
(1970)
J. Biol. Chem.
, vol.245
, pp. 3593-3602
-
-
Ishimura, Y.1
Nozaki, M.2
Hayaishi, O.3
Nakamura, T.4
Tamura, M.5
Yamazaki, I.6
-
19
-
-
10644274523
-
Structural and functional properties of hemoglobins from unicellular organisms as revealed by resonance Raman spectroscopy
-
DOI 10.1016/j.jinorgbio.2004.10.017, PII S0162013404003228, Heme-Diatomic Interactions, Part 1
-
Egawa, T. and Yeh, S.-R. (2005) Structural and functional properties of hemoglobins from unicellular organisms as revealed by resonance Raman spectroscopy J. Inorg. Biochem. 99, 72-96 (Pubitemid 39646480)
-
(2005)
Journal of Inorganic Biochemistry
, vol.99
, Issue.1
, pp. 72-96
-
-
Egawa, T.1
Yeh, S.-R.2
-
20
-
-
70350456109
-
Evidence for a Ferryl Intermediate in Heme-based Dioxygenases: Mechanistic Implications
-
Lewis-Ballester, A., Batabyal, D., Egawa, T., Lu, C., Lin, Y., Marti, M. A., Capece, L., Estrin, D. A., and Yeh, S. R. (2009) Evidence for a Ferryl Intermediate in Heme-based Dioxygenases: Mechanistic Implications Proc. Natl. Acad. Sci. U.S.A. 106, 17371-17376
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 17371-17376
-
-
Lewis-Ballester, A.1
Batabyal, D.2
Egawa, T.3
Lu, C.4
Lin, Y.5
Marti, M.A.6
Capece, L.7
Estrin, D.A.8
Yeh, S.R.9
-
21
-
-
33750587438
-
Molecular dynamics with coupling to an external bath
-
Berendsen, H. J. C., Postma, J. P. M., van Gunsteren, W. F., DiNola, A., and Haak, J. R. (1984) Molecular dynamics with coupling to an external bath J. Chem. Phys. 81, 3684-3690
-
(1984)
J. Chem. Phys.
, vol.81
, pp. 3684-3690
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Van Gunsteren, W.F.3
Dinola, A.4
Haak, J.R.5
-
22
-
-
0001398008
-
How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules?
-
Wang, J., Cieplak, P., and Kollman, P. A. (2000) How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules? J. Comput. Chem. 21, 1049-1074
-
(2000)
J. Comput. Chem.
, vol.21
, pp. 1049-1074
-
-
Wang, J.1
Cieplak, P.2
Kollman, P.A.3
-
23
-
-
33646497457
-
Dioxygen affinity in heme proteins investigated by computer simulation
-
Marti, M. A., Crespo, A., Capece, L., Boechi, L., Bikiel, D. E., Scherlis, D. A., and Estrin, D. A. (2006) Dioxygen affinity in heme proteins investigated by computer simulation J. Inorg. Biochem. 100, 761-770
-
(2006)
J. Inorg. Biochem.
, vol.100
, pp. 761-770
-
-
Marti, M.A.1
Crespo, A.2
Capece, L.3
Boechi, L.4
Bikiel, D.E.5
Scherlis, D.A.6
Estrin, D.A.7
-
24
-
-
66249096026
-
Exploring the nitric oxide detoxification mechanism of mycobacterium tuberculosis truncated haemoglobin N
-
Bidon-Chanal, A., Martí, M. A., Estrin, D. A., and Luque, F. J. (2009) Exploring the nitric oxide detoxification mechanism of mycobacterium tuberculosis truncated haemoglobin N NATO Science for Peace and Security Series A: Chemistry and Biology, 33-47
-
(2009)
NATO Science for Peace and Security Series A: Chemistry and Biology
, pp. 33-47
-
-
Bidon-Chanal, A.1
Martí, M.A.2
Estrin, D.A.3
Luque, F.J.4
-
25
-
-
0029633186
-
AMBER, a package of computer programs for applying molecular mechanics, normal mode analysis, molecular dynamics and free energy calculations to simulate the structural and energetic properties of molecules
-
Pearlman, D. A., Case, D. A., Caldwell, J. W., Ross, W. S., Cheatham, T. E., DeBolt, S., Ferguson, D., Seibel, G., and Kollman, P. (1995) AMBER, a package of computer programs for applying molecular mechanics, normal mode analysis, molecular dynamics and free energy calculations to simulate the structural and energetic properties of molecules Comput. Phys. Commun. 91, 1-41
-
(1995)
Comput. Phys. Commun.
, vol.91
, pp. 1-41
-
-
Pearlman, D.A.1
Case, D.A.2
Caldwell, J.W.3
Ross, W.S.4
Cheatham, T.E.5
Debolt, S.6
Ferguson, D.7
Seibel, G.8
Kollman, P.9
-
26
-
-
47049126032
-
Nitric oxide reactivity with globins as investigated through computer simulation
-
Marti, M. A., Capece, L., Bidon-Chanal, A., Crespo, A., Guallar, V., Luque, F. J., and Estrin, D. A. (2008) Nitric oxide reactivity with globins as investigated through computer simulation Methods Enzymol. 437, 477-498
-
(2008)
Methods Enzymol.
, vol.437
, pp. 477-498
-
-
Marti, M.A.1
Capece, L.2
Bidon-Chanal, A.3
Crespo, A.4
Guallar, V.5
Luque, F.J.6
Estrin, D.A.7
-
27
-
-
51949109022
-
Density functional theory study on a missing piece in understanding of heme chemistry: The reaction mechanism for indoleamine 2,3-dioxygenase and tryptophan 2,3-dioxygenase
-
Chung, L. W., Li, X., Sugimoto, H., Shiro, Y., and Morokuma, K. (2008) Density functional theory study on a missing piece in understanding of heme chemistry: The reaction mechanism for indoleamine 2,3-dioxygenase and tryptophan 2,3-dioxygenase J. Am. Chem. Soc. 130, 12299-12309
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 12299-12309
-
-
Chung, L.W.1
Li, X.2
Sugimoto, H.3
Shiro, Y.4
Morokuma, K.5
-
28
-
-
77956092331
-
ONIOM Study on a Missing Piece in Our Understanding of Heme Chemistry: Bacterial Tryptophan 2,3-Dioxygenase with Dual Oxidants
-
Chung, L. W., Li, X., Sugimoto, H., Shiro, Y., and Morokuma, K. (2010) ONIOM Study on a Missing Piece in Our Understanding of Heme Chemistry: Bacterial Tryptophan 2,3-Dioxygenase with Dual Oxidants J. Am. Chem. Soc. 132, 11993-12005
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 11993-12005
-
-
Chung, L.W.1
Li, X.2
Sugimoto, H.3
Shiro, Y.4
Morokuma, K.5
|