메뉴 건너뛰기




Volumn 6, Issue 12, 2011, Pages

Assessment of inactivating stop codon mutations in forty saccharomyces cerevisiae strains: Implications for [PSI +] prion- mediated phenotypes

Author keywords

[No Author keywords available]

Indexed keywords

PRION PROTEIN;

EID: 83455213263     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0028684     Document Type: Article
Times cited : (14)

References (45)
  • 1
    • 84966138908 scopus 로고
    • A cytoplasmic suppressor of super-suppressor in yeast
    • Cox BS, (1965) A cytoplasmic suppressor of super-suppressor in yeast. Heredity 20: 505-521.
    • (1965) Heredity , vol.20 , pp. 505-521
    • Cox, B.S.1
  • 2
    • 0028308104 scopus 로고
    • [URE3] as an altered URE2 protein: evidence for a prion analog in Saccharomyces cerevisiae
    • Wickner RB, (1994) [URE3] as an altered URE2 protein: evidence for a prion analog in Saccharomyces cerevisiae. Science 264: 566-569.
    • (1994) Science , vol.264 , pp. 566-569
    • Wickner, R.B.1
  • 3
    • 24644439320 scopus 로고    scopus 로고
    • Chaperoning prions: the cellular machinery for propagating an infectious protein?
    • Jones GW, Tuite MF, (2005) Chaperoning prions: the cellular machinery for propagating an infectious protein? Bioessays 27: 823-832.
    • (2005) Bioessays , vol.27 , pp. 823-832
    • Jones, G.W.1    Tuite, M.F.2
  • 4
    • 67649361913 scopus 로고    scopus 로고
    • Influence of Hsp70s and their regulators on yeast prion propagation
    • Masison DC, Kirkland PA, Sharma D, (2009) Influence of Hsp70s and their regulators on yeast prion propagation. Prion 3: 65-73.
    • (2009) Prion , vol.3 , pp. 65-73
    • Masison, D.C.1    Kirkland, P.A.2    Sharma, D.3
  • 5
    • 39149142505 scopus 로고    scopus 로고
    • Insights into the mechanism of prion propagation
    • Perrett S, Jones GW, (2008) Insights into the mechanism of prion propagation. Curr Opin Struct Biol 18: 52-59.
    • (2008) Curr Opin Struct Biol , vol.18 , pp. 52-59
    • Perrett, S.1    Jones, G.W.2
  • 6
    • 31444452768 scopus 로고    scopus 로고
    • The battle of the fold: chaperones take on prions
    • True HL, (2006) The battle of the fold: chaperones take on prions. Trends Genet 22: 110-117.
    • (2006) Trends Genet , vol.22 , pp. 110-117
    • True, H.L.1
  • 7
    • 63049091236 scopus 로고    scopus 로고
    • A systematic survey identifies prions and illuminates sequence features of prionogenic proteins
    • Alberti S, Halfmann R, King O, Kapila A, Lindquist S, (2009) A systematic survey identifies prions and illuminates sequence features of prionogenic proteins. Cell 137: 146-158.
    • (2009) Cell , vol.137 , pp. 146-158
    • Alberti, S.1    Halfmann, R.2    King, O.3    Kapila, A.4    Lindquist, S.5
  • 8
    • 70349612496 scopus 로고    scopus 로고
    • A heritable switch in carbon source utilization driven by an unusual yeast prion
    • Brown JC, Lindquist S, (2009) A heritable switch in carbon source utilization driven by an unusual yeast prion. Genes Dev 23: 2320-2332.
    • (2009) Genes Dev , vol.23 , pp. 2320-2332
    • Brown, J.C.1    Lindquist, S.2
  • 9
    • 41349087784 scopus 로고    scopus 로고
    • Newly identified prion linked to the chromatin-remodeling factor Swi1 in Saccharomyces cerevisiae
    • Du Z, Park KW, Yu H, Fan Q, Li L, (2008) Newly identified prion linked to the chromatin-remodeling factor Swi1 in Saccharomyces cerevisiae. Nat Genet 40: 460-465.
    • (2008) Nat Genet , vol.40 , pp. 460-465
    • Du, Z.1    Park, K.W.2    Yu, H.3    Fan, Q.4    Li, L.5
  • 10
    • 0035958547 scopus 로고    scopus 로고
    • Multiple Gln/Asn-rich prion domains confer susceptibility to induction of the yeast [PSI(+)] prion
    • Osherovich LZ, Weissman JS, (2001) Multiple Gln/Asn-rich prion domains confer susceptibility to induction of the yeast [PSI(+)] prion. Cell 106: 183-194.
    • (2001) Cell , vol.106 , pp. 183-194
    • Osherovich, L.Z.1    Weissman, J.S.2
  • 11
    • 61849091420 scopus 로고    scopus 로고
    • The yeast global transcriptional co-repressor protein Cyc8 can propagate as a prion
    • Patel BK, Gavin-Smyth J, Liebman SW, (2009) The yeast global transcriptional co-repressor protein Cyc8 can propagate as a prion. Nat Cell Biol 11: 344-349.
    • (2009) Nat Cell Biol , vol.11 , pp. 344-349
    • Patel, B.K.1    Gavin-Smyth, J.2    Liebman, S.W.3
  • 12
    • 0035958585 scopus 로고    scopus 로고
    • Prions affect the appearance of other prions: the story of [PIN(+)]
    • Derkatch IL, Bradley ME, Hong JY, Liebman SW, (2001) Prions affect the appearance of other prions: the story of [PIN(+)]. Cell 106: 171-182.
    • (2001) Cell , vol.106 , pp. 171-182
    • Derkatch, I.L.1    Bradley, M.E.2    Hong, J.Y.3    Liebman, S.W.4
  • 13
    • 0033118934 scopus 로고    scopus 로고
    • Translation termination efficiency can be regulated in Saccharomyces cerevisiae by environmental stress through a prion-mediated mechanism
    • Eaglestone SS, Cox BS, Tuite MF, (1999) Translation termination efficiency can be regulated in Saccharomyces cerevisiae by environmental stress through a prion-mediated mechanism. Embo J 18: 1974-1981.
    • (1999) Embo J , vol.18 , pp. 1974-1981
    • Eaglestone, S.S.1    Cox, B.S.2    Tuite, M.F.3
  • 15
    • 0034727077 scopus 로고    scopus 로고
    • A yeast prion provides a mechanism for genetic variation and phenotypic diversity
    • True HL, Lindquist SL, (2000) A yeast prion provides a mechanism for genetic variation and phenotypic diversity. Nature 407: 477-483.
    • (2000) Nature , vol.407 , pp. 477-483
    • True, H.L.1    Lindquist, S.L.2
  • 16
    • 33947390044 scopus 로고    scopus 로고
    • Evolution of budding yeast prion-determinant sequences across diverse fungi
    • Harrison LB, Yu Z, Stajich JE, Dietrich FS, Harrison PM, (2007) Evolution of budding yeast prion-determinant sequences across diverse fungi. J Mol Biol 368: 273-282.
    • (2007) J Mol Biol , vol.368 , pp. 273-282
    • Harrison, L.B.1    Yu, Z.2    Stajich, J.E.3    Dietrich, F.S.4    Harrison, P.M.5
  • 17
    • 77957740228 scopus 로고    scopus 로고
    • Protein folding sculpting evolutionary change
    • Lindquist S, (2009) Protein folding sculpting evolutionary change. Cold Spring Harb Symp Quant Biol 74: 103-108.
    • (2009) Cold Spring Harb Symp Quant Biol , vol.74 , pp. 103-108
    • Lindquist, S.1
  • 20
    • 4544235083 scopus 로고    scopus 로고
    • Epigenetic regulation of translation reveals hidden genetic variation to produce complex traits
    • True HL, Berlin I, Lindquist SL, (2004) Epigenetic regulation of translation reveals hidden genetic variation to produce complex traits. Nature 431: 184-187.
    • (2004) Nature , vol.431 , pp. 184-187
    • True, H.L.1    Berlin, I.2    Lindquist, S.L.3
  • 21
    • 22544436364 scopus 로고    scopus 로고
    • Genetic interactions between [PSI+] and nonstop mRNA decay affect phenotypic variation
    • Wilson MA, Meaux S, Parker R, van Hoof A, (2005) Genetic interactions between [PSI+] and nonstop mRNA decay affect phenotypic variation. Proc Natl Acad Sci U S A 102: 10244-10249.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 10244-10249
    • Wilson, M.A.1    Meaux, S.2    Parker, R.3    van Hoof, A.4
  • 23
    • 0037297381 scopus 로고    scopus 로고
    • Saccharomyces cerevisiae Hsp70 mutations affect [PSI+] prion propagation and cell growth differently and implicate Hsp40 and tetratricopeptide repeat cochaperones in impairment of [PSI+]
    • Jones GW, Masison DC, (2003) Saccharomyces cerevisiae Hsp70 mutations affect [PSI+] prion propagation and cell growth differently and implicate Hsp40 and tetratricopeptide repeat cochaperones in impairment of [PSI+]. Genetics 163: 495-506.
    • (2003) Genetics , vol.163 , pp. 495-506
    • Jones, G.W.1    Masison, D.C.2
  • 24
    • 0033786333 scopus 로고    scopus 로고
    • A role for cytosolic hsp70 in yeast [PSI(+)] prion propagation and [PSI(+)] as a cellular stress
    • Jung G, Jones G, Wegrzyn RD, Masison DC, (2000) A role for cytosolic hsp70 in yeast [PSI(+)] prion propagation and [PSI(+)] as a cellular stress. Genetics 156: 559-570.
    • (2000) Genetics , vol.156 , pp. 559-570
    • Jung, G.1    Jones, G.2    Wegrzyn, R.D.3    Masison, D.C.4
  • 25
    • 33947290033 scopus 로고    scopus 로고
    • Channel mutations in Hsp104 hexamer distinctively affect thermotolerance and prion-specific propagation
    • Kurahashi H, Nakamura Y, (2007) Channel mutations in Hsp104 hexamer distinctively affect thermotolerance and prion-specific propagation. Mol Microbiol 63: 1669-1683.
    • (2007) Mol Microbiol , vol.63 , pp. 1669-1683
    • Kurahashi, H.1    Nakamura, Y.2
  • 26
    • 34247899009 scopus 로고    scopus 로고
    • Importance of the Hsp70 ATPase domain in yeast prion propagation
    • Loovers HM, Guinan E, Jones GW, (2007) Importance of the Hsp70 ATPase domain in yeast prion propagation. Genetics 175: 621-630.
    • (2007) Genetics , vol.175 , pp. 621-630
    • Loovers, H.M.1    Guinan, E.2    Jones, G.W.3
  • 27
    • 57049095797 scopus 로고    scopus 로고
    • Sequential elimination of major-effect contributors identifies additional quantitative trait loci conditioning high-temperature growth in yeast
    • Sinha H, David L, Pascon RC, Clauder-Munster S, Krishnakumar S, et al. (2008) Sequential elimination of major-effect contributors identifies additional quantitative trait loci conditioning high-temperature growth in yeast. Genetics 180: 1661-1670.
    • (2008) Genetics , vol.180 , pp. 1661-1670
    • Sinha, H.1    David, L.2    Pascon, R.C.3    Clauder-Munster, S.4    Krishnakumar, S.5
  • 28
    • 61849086647 scopus 로고    scopus 로고
    • Yeast prions and their analysis in vivo
    • In: Stansfield I, Stark MJR, editors, London, UK, Academic Press
    • Tuite M, Byrne L, Josse L, Ness F, Kollteva-Levine N, et al. (2007) Yeast prions and their analysis in vivo. In: Stansfield I, Stark MJR, editors. Yeast Gene Analysis Second Edition London, UK Academic Press pp. 491-526.
    • (2007) Yeast Gene Analysis Second Edition , pp. 491-526
    • Tuite, M.1    Byrne, L.2    Josse, L.3    Ness, F.4    Kollteva-Levine, N.5
  • 29
    • 11244334104 scopus 로고    scopus 로고
    • Enhanced peptide secretion by gene disruption of CYM1, a novel protease in Saccharomyces cerevisiae
    • Jonson L, Rehfeld JF, Johnsen AH, (2004) Enhanced peptide secretion by gene disruption of CYM1, a novel protease in Saccharomyces cerevisiae. Eur J Biochem 271: 4788-4797.
    • (2004) Eur J Biochem , vol.271 , pp. 4788-4797
    • Jonson, L.1    Rehfeld, J.F.2    Johnsen, A.H.3
  • 30
    • 12844285611 scopus 로고    scopus 로고
    • Elevated evolutionary rates in the laboratory strain of Saccharomyces cerevisiae
    • Gu Z, David L, Petrov D, Jones T, Davis RW, et al. (2005) Elevated evolutionary rates in the laboratory strain of Saccharomyces cerevisiae. Proc Natl Acad Sci U S A 102: 1092-1097.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 1092-1097
    • Gu, Z.1    David, L.2    Petrov, D.3    Jones, T.4    Davis, R.W.5
  • 31
    • 33846840904 scopus 로고    scopus 로고
    • The conversion of 3′ UTRs into coding regions
    • Giacomelli MG, Hancock AS, Masel J, (2007) The conversion of 3′ UTRs into coding regions. Mol Biol Evol 24: 457-464.
    • (2007) Mol Biol Evol , vol.24 , pp. 457-464
    • Giacomelli, M.G.1    Hancock, A.S.2    Masel, J.3
  • 32
    • 77950881235 scopus 로고    scopus 로고
    • Ribosome-associated peroxiredoxins suppress oxidative stress-induced de novo formation of the [PSI+] prion in yeast
    • Sideri TC, Stojanovski K, Tuite MF, Grant CM, (2010) Ribosome-associated peroxiredoxins suppress oxidative stress-induced de novo formation of the [PSI+] prion in yeast. Proc Natl Acad Sci U S A 107: 6394-6399.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 6394-6399
    • Sideri, T.C.1    Stojanovski, K.2    Tuite, M.F.3    Grant, C.M.4
  • 33
    • 56849099636 scopus 로고    scopus 로고
    • Prion switching in response to environmental stress
    • Tyedmers J, Madariaga ML, Lindquist S, (2008) Prion switching in response to environmental stress. PLoS Biol 6: e294.
    • (2008) PLoS Biol , vol.6
    • Tyedmers, J.1    Madariaga, M.L.2    Lindquist, S.3
  • 34
    • 67651230677 scopus 로고    scopus 로고
    • Complex adaptations can drive the evolution of the capacitor [PSI], even with realistic rates of yeast sex
    • Griswold CK, Masel J, (2009) Complex adaptations can drive the evolution of the capacitor [PSI], even with realistic rates of yeast sex. PLoS Genet 5: e1000517.
    • (2009) PLoS Genet , vol.5
    • Griswold, C.K.1    Masel, J.2
  • 35
    • 0029052468 scopus 로고
    • Role of the chaperone protein Hsp104 in propagation of the yeast prion-like factor [psi+]
    • Chernoff YO, Lindquist SL, Ono B, Inge-Vechtomov SG, Liebman SW, (1995) Role of the chaperone protein Hsp104 in propagation of the yeast prion-like factor [psi+]. Science 268: 880-884.
    • (1995) Science , vol.268 , pp. 880-884
    • Chernoff, Y.O.1    Lindquist, S.L.2    Ono, B.3    Inge-Vechtomov, S.G.4    Liebman, S.W.5
  • 36
    • 37249063043 scopus 로고    scopus 로고
    • The role of Sse1 in the de novo formation and variant determination of the [PSI+] prion
    • Fan Q, Park KW, Du Z, Morano KA, Li L, (2007) The role of Sse1 in the de novo formation and variant determination of the [PSI+] prion. Genetics 177: 1583-1593.
    • (2007) Genetics , vol.177 , pp. 1583-1593
    • Fan, Q.1    Park, K.W.2    Du, Z.3    Morano, K.A.4    Li, L.5
  • 37
    • 0032951475 scopus 로고    scopus 로고
    • Antagonistic interactions between yeast chaperones Hsp104 and Hsp70 in prion curing
    • Newnam GP, Wegrzyn RD, Lindquist SL, Chernoff YO, (1999) Antagonistic interactions between yeast chaperones Hsp104 and Hsp70 in prion curing. Mol Cell Biol 19: 1325-1333.
    • (1999) Mol Cell Biol , vol.19 , pp. 1325-1333
    • Newnam, G.P.1    Wegrzyn, R.D.2    Lindquist, S.L.3    Chernoff, Y.O.4
  • 38
    • 69949085953 scopus 로고    scopus 로고
    • Function of SSA subfamily of Hsp70 within and across species varies widely in complementing Saccharomyces cerevisiae cell growth and prion propagation
    • Sharma D, Martineau CN, Le Dall MT, Reidy M, Masison DC, et al. (2009) Function of SSA subfamily of Hsp70 within and across species varies widely in complementing Saccharomyces cerevisiae cell growth and prion propagation. PLoS One 4: e6644.
    • (2009) PLoS One , vol.4
    • Sharma, D.1    Martineau, C.N.2    Le Dall, M.T.3    Reidy, M.4    Masison, D.C.5
  • 39
    • 0036096777 scopus 로고    scopus 로고
    • Antagonistic interactions between yeast [PSI(+)] and [URE3] prions and curing of [URE3] by Hsp70 protein chaperone Ssa1p but not by Ssa2p
    • Schwimmer C, Masison DC, (2002) Antagonistic interactions between yeast [PSI(+)] and [URE3] prions and curing of [URE3] by Hsp70 protein chaperone Ssa1p but not by Ssa2p. Mol Cell Biol 22: 3590-3598.
    • (2002) Mol Cell Biol , vol.22 , pp. 3590-3598
    • Schwimmer, C.1    Masison, D.C.2
  • 40
    • 55549097836 scopus 로고    scopus 로고
    • Mapping short DNA sequencing reads and calling variants using mapping quality scores
    • Li H, Ruan J, Durbin R, (2008) Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res 18: 1851-1858.
    • (2008) Genome Res , vol.18 , pp. 1851-1858
    • Li, H.1    Ruan, J.2    Durbin, R.3
  • 41
    • 33645816587 scopus 로고    scopus 로고
    • Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified
    • Keane TM, Creevey CJ, Pentony MM, Naughton TJ, McLnerney JO, (2006) Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified. BMC Evol Biol 6: 29.
    • (2006) BMC Evol Biol , vol.6 , pp. 29
    • Keane, T.M.1    Creevey, C.J.2    Pentony, M.M.3    Naughton, T.J.4    McLnerney, J.O.5
  • 42
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S, Gascuel O, (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52: 696-704.
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 43
    • 1942518319 scopus 로고    scopus 로고
    • Propagation of Saccharomyces cerevisiae [PSI+] prion is impaired by factors that regulate Hsp70 substrate binding
    • Jones G, Song Y, Chung S, Masison DC, (2004) Propagation of Saccharomyces cerevisiae [PSI+] prion is impaired by factors that regulate Hsp70 substrate binding. Mol Cell Biol 24: 3928-3937.
    • (2004) Mol Cell Biol , vol.24 , pp. 3928-3937
    • Jones, G.1    Song, Y.2    Chung, S.3    Masison, D.C.4
  • 44
    • 70350136778 scopus 로고    scopus 로고
    • Polymorphisms in multiple genes contribute to the spontaneous mitochondrial genome instability of Saccharomyces cerevisiae S288C strains
    • Dimitrov LN, Brem RB, Kruglyak L, Gottschling DE, (2009) Polymorphisms in multiple genes contribute to the spontaneous mitochondrial genome instability of Saccharomyces cerevisiae S288C strains. Genetics 183: 365-383.
    • (2009) Genetics , vol.183 , pp. 365-383
    • Dimitrov, L.N.1    Brem, R.B.2    Kruglyak, L.3    Gottschling, D.E.4
  • 45
    • 70350537273 scopus 로고    scopus 로고
    • Generation of a large set of genetically tractable haploid and diploid Saccharomyces strains
    • Cubillos FA, Louis EJ, Liti G, (2009) Generation of a large set of genetically tractable haploid and diploid Saccharomyces strains. FEMS Yeast Res 9: 1217-1225.
    • (2009) FEMS Yeast Res , vol.9 , pp. 1217-1225
    • Cubillos, F.A.1    Louis, E.J.2    Liti, G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.