Elevated evolutionary rates in the laboratory strain of Saccharomyces cerevisiae

Proceedings of the National Academy of Sciences of the United States of America

Volumn 102, Issue 4, 2005, Pages 1092-1097

  Gu, Zhenglong ^a   David, Lior ^a   Petrov, Dmitri ^b   Jones, Ted ^a   Davis, Ronald W ^a   Steinmetz, Lars M ^a,c  

^a STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b STANFORD UNIVERSITY   (United States)

^c EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

Author keywords

Model organism; Slightly deleterious mutation; Yeast evolution

Indexed keywords

ADAPTATION; ANIMAL MODEL; ANTHROPOLOGY; ARTICLE; BOTTLENECK POPULATION; CODON USAGE; CROP; DOMESTICATION; EVOLUTIONARY RATE; FUNGAL GENE; FUNGAL STRAIN; GENE MUTATION; GENETIC MANIPULATION; GENETIC SELECTION; INDUSTRIAL PRODUCTION; LABORATORY; LABORATORY STRAIN; LIVESTOCK; MAXIMUM LIKELIHOOD METHOD; NONHUMAN; NONSYNONYMOUS EVOLUTIONARY RATE; PRIORITY JOURNAL; RECURRENT SELECTION; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE S288C; SACCHAROMYCES CEREVISIAE YJM789; SPECIES CULTIVATION; SYNONYMOUS EVOLUTIONARY RATE; WILD TYPE;

EVOLUTION; LABORATORIES; LIKELIHOOD FUNCTIONS; SACCHAROMYCES CEREVISIAE; SELECTION (GENETICS);

ANIMALIA; SACCHAROMYCES; SACCHAROMYCES CEREVISIAE;

EID: 12844285611     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0409159102     Document Type: Article

References (38)

1. Goffeau, A., Barrell, B. G., Bussey, H., Davis, R. W., Dujon, B., Feldmann, H., Galibert, F., Hoheisel, J. D., Jacq, C., Johnston, M., et al. (1996) Science 274, 563-567.
2. Mortimer, R. K. & Johnston, J. R. (1986) Genetics 113, 35-43.
3. Ohta, T. (1972) J. Mol. Evol. 1, 305-314.
4. Ohta, T. & Kimura, M. (1971) J. Mol. Evol. 1, 18-25.
5. Ohta, T. (1973) Nature 246, 96-98.
6. Ohta, T. (1987) J. Mol. Evol. 26, 1-6.
7. Ohta, T. (1993) Annu. Rev. Ecol. Syst. 23, 263-286.
8. Kimura, M. (1983) The Neutral Theory of Molecular Evolution (Cambridge Univ. Press, Cambridge, U.K.).
9. Moran, N. A. (1996) Proc. Natl. Acad. Sci. USA 93, 2873-2878.
10. Johnson, K. P. & Seger, J. (2001) Mol. Biol. Evol. 18, 874-881.
11. Korona, R., Nakatsu, C. H., Forney, L. J. & Lenski, R. E. (1994) Proc. Natl. Acad. Sci. USA 91, 9037-9041.
12. Riehle, M. M., Bennett, A. F., Lenski, R. E. & Long, A. D. (2003) Physiol. Genomics 14, 47-58.
13. Tawfik, O. W., Papasian, C. J., Dixon, A. Y. & Potter, L. M. (1989) J. Clin. Microbiol. 27, 1689-1691.
14. Kellis, M., Patterson, N., Endrizzi, M., Birren, B. & Lander, E. S. (2003) Nature 423, 241-254.
15. Goldman, N. & Yang, Z. (1994) Mol. Biol. Evol. 11, 725-736.
16. Yang, Z. (1996) J. Mol. Evol. 42, 294-307.
17. Wright, F. (1990) Gene 87, 23-29.
18. Yang, Z. & Nielsen, R. (2002) Mol. Biol. Evol. 19, 908-917.
19. Akashi, H. (2003) Genetics 164, 1291-1303.
20. Efron, B. & Tibshirani, R.J. (1998) An Introduction to the Bootstrap (Chapman & Hall/CRC, Boca Raton, FL).
21. Sharp, P. M. & Li, W.-H. (1987) Mol. Biol. Evol. 4, 222-230.
22. Carulli, J. P., Krane, D. E., Hartl, D. L. & Ochman, H. (1993) Genetics 134, 837-845.
23. Sharp, P. M. & Li, W.-H. (1989) J. Mol. Biol. 28, 398-402.
24. Shields, D. C., Sharp, P. M., Higgins, D. G. & Wright, F. (1988) Mol. Biol. Evol. 5, 704-716.
25. Rocha, E. P. C. & Danchin, A. (2004) Mol. Biol. Evol. 21, 108-116.
26. Winzeler, E. A., Castillo-Davis, C. I., Oshiro, G., Liang, D., Richards, D. R., Zhou, Y. & Hartl, D. L. (2003) Genetics 163, 79-89.
27. Ballard, J. W. & Kreitman, M. (1994) Genetics 138, 757-772.
28. Rand, D., Dorfsman, M. & Kann, L. (1994) Genetics 138, 741-756.
29. Nachman, M., Brown, W., Stoneking, M. & Aquadro, C. (1996) Genetics 142, 953-963.
30. Templeton, A. (1996) Genetics 144, 1263-1270.
31. Wise, C., Sraml, M. & Easteal, S. (1998) Genetics 148, 409-421.
32. Hasegawa, M., Cao, Y. & Yang, Z. (1998) Mol. Biol. Evol. 15, 1499-1505.
33. Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D., Butler, H., Cherry, J. M., Davis, A. P., Dolinski, K., Dwight, S. S., Eppig, J. T., et al. (2000) Nat. Genet. 25, 25-29.
34. Itoh, T., Martin, W. & Nei, M. (2002) Proc. Natl. Acad. Sci. USA 99, 12944-12948.
35. Nachman, M. W., Boyer, S. N. & Aquadro, C. F. (1994) Proc. Natl. Acad. Sci. USA 91, 6364-6368.
36. Steinmetz, L. M., Sinha, H., Richards, D. R., Spiegelman, J. I., Oefner, P. J., McCusker, J. H. & Davis, R. W. (2002) Nature 416, 326-330.
37. Leem, S. H., Park, J. E., Kim, I. S., Chae, J. Y., Sugino, A. & Sunwoo, Y. (2003) Mol. Cells 15, 55-61.
38. Akashi, H. (1996) Genetics 144, 1297-1307.