메뉴 건너뛰기




Volumn 77, Issue 22, 2011, Pages 7915-7923

Phenotypic diversity caused by differential RpoS activity among environmental Escherichia coli isolates

Author keywords

[No Author keywords available]

Indexed keywords

ADAPTIVE MUTATION; BACTERIAL POPULATION; CARBON SOURCE; CATALASE ACTIVITY; E. COLI; ENTERIC BACTERIA; ENVIRONMENTAL ISOLATES; FECAL POLLUTION; LAKE ONTARIO; LOWER STRESS; PARENTAL STRAINS; PATHOGENIC STRAINS; PHENOTYPIC DIFFERENCES; PHENOTYPIC DIVERSITY; SELECTIVE PRESSURE; SIGMA FACTOR; STATIONARY PHASE; STRESS RESPONSE; URBAN BEACHES;

EID: 83055180134     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.05274-11     Document Type: Article
Times cited : (51)

References (85)
  • 1
    • 67249161712 scopus 로고    scopus 로고
    • Fitness of Escherichia coli during urinary tract infection requires gluconeogenesis and the TCA cycle
    • Alteri, C. J., S. N. Smith, and H. L. Mobley. 2009. Fitness of Escherichia coli during urinary tract infection requires gluconeogenesis and the TCA cycle. PLoS Pathog. 5:e1000448.
    • (2009) PLoS Pathog , vol.5
    • Alteri, C.J.1    Smith, S.N.2    Mobley, H.L.3
  • 2
    • 0035671034 scopus 로고    scopus 로고
    • Characterisation of the allelic variation in the rpoS gene in thirteen K12 and six other non-pathogenic Escherichia coli strains
    • Atlung, T., H. V. Nielsen, and F. G. Hansen. 2002. Characterisation of the allelic variation in the rpoS gene in thirteen K12 and six other non-pathogenic Escherichia coli strains. Mol. Genet. Genomics 266:873-881.
    • (2002) Mol. Genet. Genomics , vol.266 , pp. 873-881
    • Atlung, T.1    Nielsen, H.V.2    Hansen, F.G.3
  • 4
    • 79251614596 scopus 로고    scopus 로고
    • Environmental patterns are imposed on the population structure of Escherichia coli after fecal deposition
    • Bergholz, P. W., J. D. Noar, and D. H. Buckley. 2011. Environmental patterns are imposed on the population structure of Escherichia coli after fecal deposition. Appl. Environ. Microbiol. 77:211-219.
    • (2011) Appl. Environ. Microbiol. , vol.77 , pp. 211-219
    • Bergholz, P.W.1    Noar, J.D.2    Buckley, D.H.3
  • 5
    • 34247366330 scopus 로고    scopus 로고
    • The potential for beach sand to serve as a reservoir for Escherichia coli and the physical influences on cell die-off
    • Beversdorf, L. J., S. M. Bornstein-Forst, and S. L. McLellan. 2007. The potential for beach sand to serve as a reservoir for Escherichia coli and the physical influences on cell die-off. J. Appl. Microbiol. 102:1372-1381.
    • (2007) J. Appl. Microbiol. , vol.102 , pp. 1372-1381
    • Beversdorf, L.J.1    Bornstein-Forst, S.M.2    McLellan, S.L.3
  • 6
    • 33746064095 scopus 로고    scopus 로고
    • Functional heterogeneity of RpoS in stress tolerance of enterohemorrhagic Escherichia coli strains
    • Bhagwat, A. A., et al. 2006. Functional heterogeneity of RpoS in stress tolerance of enterohemorrhagic Escherichia coli strains. Appl. Environ. Microbiol. 72:4978-4986.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 4978-4986
    • Bhagwat, A.A.1
  • 7
    • 0037849904 scopus 로고    scopus 로고
    • Stress-induced mutagenesis in bacteria
    • Bjedov, I., et al. 2003. Stress-induced mutagenesis in bacteria. Science 300: 1404-1409.
    • (2003) Science , vol.300 , pp. 1404-1409
    • Bjedov, I.1
  • 8
    • 2442456738 scopus 로고    scopus 로고
    • Crl, a low temperatureinduced protein in Escherichia coli that binds directly to the stationary phase sigma subunit of RNA polymerase
    • Bougdour, A., C. Lelong, and J. Geiselmann. 2004. Crl, a low temperatureinduced protein in Escherichia coli that binds directly to the stationary phase sigma subunit of RNA polymerase. J. Biol. Chem. 279:19540-19550.
    • (2004) J. Biol. Chem. , vol.279 , pp. 19540-19550
    • Bougdour, A.1    Lelong, C.2    Geiselmann, J.3
  • 9
    • 0035114380 scopus 로고    scopus 로고
    • Phylogenetic evidence for horizontal transfer of mutS alleles among naturally occurring Escherichia coli strains
    • Brown, E. W., J. E. LeClerc, B. Li, W. L. Payne, and T. A. Cebula. 2001. Phylogenetic evidence for horizontal transfer of mutS alleles among naturally occurring Escherichia coli strains. J. Bacteriol. 183:1631-1644.
    • (2001) J. Bacteriol. , vol.183 , pp. 1631-1644
    • Brown, E.W.1    LeClerc, J.E.2    Li, B.3    Payne, W.L.4    Cebula, T.A.5
  • 10
    • 0041528344 scopus 로고    scopus 로고
    • Ubiquity and persistence of Escherichia coli in a Midwestern coastal stream
    • Byappanahalli, M., M. Fowler, D. Shively, and R. Whitman. 2003. Ubiquity and persistence of Escherichia coli in a Midwestern coastal stream. Appl. Environ. Microbiol. 69:4549-4555.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 4549-4555
    • Byappanahalli, M.1    Fowler, M.2    Shively, D.3    Whitman, R.4
  • 11
    • 33749235677 scopus 로고    scopus 로고
    • Seasonal persistence and population characteristics of Escherichia coli and enterococci in deep backshore sand of two freshwater beaches
    • Byappanahalli, M. N., et al. 2006. Seasonal persistence and population characteristics of Escherichia coli and enterococci in deep backshore sand of two freshwater beaches. J. Water Health 4:313-320.
    • (2006) J. Water Health , vol.4 , pp. 313-320
    • Byappanahalli, M.N.1
  • 12
    • 2442611939 scopus 로고    scopus 로고
    • Carbon nutrition of Escherichia coli in the mouse intestine
    • Chang, D. E., et al. 2004. Carbon nutrition of Escherichia coli in the mouse intestine. Proc. Natl. Acad. Sci. U. S. A. 101:7427-7432.
    • (2004) Proc. Natl. Acad. Sci. U. S. A. , vol.101 , pp. 7427-7432
    • Chang, D.E.1
  • 13
    • 4344634337 scopus 로고    scopus 로고
    • Positive selection for loss of RpoS function in Escherichia coli
    • Chen, G., C. L. Patten, and H. E. Schellhorn. 2004. Positive selection for loss of RpoS function in Escherichia coli. Mutat. Res. 554:193-203.
    • (2004) Mutat. Res. , vol.554 , pp. 193-203
    • Chen, G.1    Patten, C.L.2    Schellhorn, H.E.3
  • 14
    • 77954421693 scopus 로고    scopus 로고
    • Evolution of the RpoS regulon: origin of RpoS and the conservation of RpoS-dependent regulation in bacteria
    • Chiang, S. M., and H. E. Schellhorn. 2010. Evolution of the RpoS regulon: origin of RpoS and the conservation of RpoS-dependent regulation in bacteria. J. Mol. Evol. 70:557-571.
    • (2010) J. Mol. Evol. , vol.70 , pp. 557-571
    • Chiang, S.M.1    Schellhorn, H.E.2
  • 15
    • 0033765065 scopus 로고    scopus 로고
    • An Escherichia coli reference collection group B2- and uropathogen-associated polymorphism in the rpoS-mutS region of the E. coli chromosome
    • Culham, D. E., and J. M. Wood. 2000. An Escherichia coli reference collection group B2- and uropathogen-associated polymorphism in the rpoS-mutS region of the E. coli chromosome. J. Bacteriol. 182:6272-6276.
    • (2000) J. Bacteriol. , vol.182 , pp. 6272-6276
    • Culham, D.E.1    Wood, J.M.2
  • 16
    • 0023276469 scopus 로고
    • Short chain fatty acids in human large intestine, portal, hepatic and venous blood
    • Cummings, J. H., E. W. Pomare, W. J. Branch, C. P. Naylor, and G. T. Macfarlane. 1987. Short chain fatty acids in human large intestine, portal, hepatic and venous blood. Gut 28:1221-1227.
    • (1987) Gut , vol.28 , pp. 1221-1227
    • Cummings, J.H.1    Pomare, E.W.2    Branch, W.J.3    Naylor, C.P.4    Macfarlane, G.T.5
  • 17
    • 67650587130 scopus 로고    scopus 로고
    • Polymorphism and selection of rpoS in pathogenic Escherichia coli
    • Dong, T., S. M. Chiang, C. Joyce, R. Yu, and H. E. Schellhorn. 2009. Polymorphism and selection of rpoS in pathogenic Escherichia coli. BMC Microbiol. 9:118.
    • (2009) BMC Microbiol. , vol.9 , pp. 118
    • Dong, T.1    Chiang, S.M.2    Joyce, C.3    Yu, R.4    Schellhorn, H.E.5
  • 18
    • 58449119233 scopus 로고    scopus 로고
    • Role of RpoS in the virulence of Citrobacter rodentium
    • Dong, T., B. K. Coombes, and H. E. Schellhorn. 2009. Role of RpoS in the virulence of Citrobacter rodentium. Infect. Immun. 77:501-507.
    • (2009) Infect. Immun. , vol.77 , pp. 501-507
    • Dong, T.1    Coombes, B.K.2    Schellhorn, H.E.3
  • 20
    • 34547401084 scopus 로고    scopus 로고
    • Multiple lines of evidence to identify the sources of fecal pollution at a freshwater beach in Hamilton Harbour
    • Edge, T. A., and S. Hill. 2007. Multiple lines of evidence to identify the sources of fecal pollution at a freshwater beach in Hamilton Harbour, Lake Ontario. Water Res. 41:3585-3594.
    • (2007) Lake Ontario. Water Res. , vol.41 , pp. 3585-3594
    • Edge, T.A.1    Hill, S.2
  • 21
    • 0344235402 scopus 로고    scopus 로고
    • The growth advantage in stationaryphase phenotype conferred by rpoS mutations is dependent on the pH and nutrient environment
    • Farrell, M. J., and S. E. Finkel. 2003. The growth advantage in stationaryphase phenotype conferred by rpoS mutations is dependent on the pH and nutrient environment. J. Bacteriol. 185:7044-7052.
    • (2003) J. Bacteriol. , vol.185 , pp. 7044-7052
    • Farrell, M.J.1    Finkel, S.E.2
  • 22
    • 0141817853 scopus 로고    scopus 로고
    • What is driving the acquisition of mutS and rpoS polymorphisms in Escherichia coli?
    • Ferenci, T. 2003. What is driving the acquisition of mutS and rpoS polymorphisms in Escherichia coli? Trends Microbiol. 11:457-461.
    • (2003) Trends Microbiol. , vol.11 , pp. 457-461
    • Ferenci, T.1
  • 23
    • 21244473267 scopus 로고    scopus 로고
    • Maintaining a healthy SPANC balance through regulatory and mutational adaptation
    • Ferenci, T. 2005. Maintaining a healthy SPANC balance through regulatory and mutational adaptation. Mol. Microbiol. 57:1-8.
    • (2005) Mol. Microbiol. , vol.57 , pp. 1-8
    • Ferenci, T.1
  • 24
    • 42449118998 scopus 로고    scopus 로고
    • The spread of a beneficial mutation in experimental bacterial populations: the influence of the environment and genotype on the fixation of rpoS mutations
    • Ferenci, T. 2008. The spread of a beneficial mutation in experimental bacterial populations: the influence of the environment and genotype on the fixation of rpoS mutations. Heredity 100:446-452.
    • (2008) Heredity , vol.100 , pp. 446-452
    • Ferenci, T.1
  • 25
    • 79953122659 scopus 로고    scopus 로고
    • The constancy of global regulation across a species: the concentrations of ppGpp and RpoS are strain-specific in Escherichia coli
    • Ferenci, T., H. F. Galbiati, T. Betteridge, K. Phan, and B. Spira. 2011. The constancy of global regulation across a species: the concentrations of ppGpp and RpoS are strain-specific in Escherichia coli. BMC Microbiol. 11:62.
    • (2011) BMC Microbiol. , vol.11 , pp. 62
    • Ferenci, T.1    Galbiati, H.F.2    Betteridge, T.3    Phan, K.4    Spira, B.5
  • 26
    • 35548970291 scopus 로고    scopus 로고
    • Variation in stress responses within a bacterial species and the indirect costs of stress resistance
    • Ferenci, T., and B. Spira. 2007. Variation in stress responses within a bacterial species and the indirect costs of stress resistance. Ann. N. Y. Acad. Sci. 1113:105-113.
    • (2007) Ann. N. Y. Acad. Sci. , vol.1113 , pp. 105-113
    • Ferenci, T.1    Spira, B.2
  • 27
    • 0032999491 scopus 로고    scopus 로고
    • Characterization of rpoS alleles in Escherichia coli O157: H7 and in other E. coli serotypes
    • Ferreira, A., L. Rendano, M. Wiedmann, and K. J. Boor. 1999. Characterization of rpoS alleles in Escherichia coli O157:H7 and in other E. coli serotypes. J. Appl. Microbiol. 86:295-301.
    • (1999) J. Appl. Microbiol. , vol.86 , pp. 295-301
    • Ferreira, A.1    Rendano, L.2    Wiedmann, M.3    Boor, K.J.4
  • 28
    • 0033616769 scopus 로고    scopus 로고
    • Evolution of microbial diversity during prolonged starvation
    • Finkel, S. E., and R. Kolter. 1999. Evolution of microbial diversity during prolonged starvation. Proc. Natl. Acad. Sci. U. S. A. 96:4023-4027.
    • (1999) Proc. Natl. Acad. Sci. U. S. A. , vol.96 , pp. 4023-4027
    • Finkel, S.E.1    Kolter, R.2
  • 30
    • 0015976238 scopus 로고
    • Visualization of catalase on acrylamide gels
    • Gregory, E. M., and I. Fridovich. 1974. Visualization of catalase on acrylamide gels. Anal. Biochem. 58:57-62.
    • (1974) Anal. Biochem. , vol.58 , pp. 57-62
    • Gregory, E.M.1    Fridovich, I.2
  • 31
    • 0027391016 scopus 로고
    • Osmotic regulation of rpoS-dependent genes in Escherichia coli
    • Hengge-Aronis, R., R. Lange, N. Henneberg, and D. Fischer. 1993. Osmotic regulation of rpoS-dependent genes in Escherichia coli. J. Bacteriol. 175:259-265.
    • (1993) J. Bacteriol. , vol.175 , pp. 259-265
    • Hengge-Aronis, R.1    Lange, R.2    Henneberg, N.3    Fischer, D.4
  • 32
    • 0033802038 scopus 로고    scopus 로고
    • Gene conservation and loss in the mutS-rpoS genomic region of pathogenic Escherichia coli
    • Herbelin, C. J., S. C. Chirillo, K. A. Melnick, and T. S. Whittam. 2000. Gene conservation and loss in the mutS-rpoS genomic region of pathogenic Escherichia coli. J. Bacteriol. 182:5381-5390.
    • (2000) J. Bacteriol. , vol.182 , pp. 5381-5390
    • Herbelin, C.J.1    Chirillo, S.C.2    Melnick, K.A.3    Whittam, T.S.4
  • 33
    • 78049445172 scopus 로고    scopus 로고
    • Evidence that mutation is universally biased towards AT in bacteria
    • Hershberg, R., and D. A. Petrov. 2010. Evidence that mutation is universally biased towards AT in bacteria. PLoS Genet. 6:e1001115.
    • (2010) PLoS Genet. , vol.6
    • Hershberg, R.1    Petrov, D.A.2
  • 34
    • 33644853450 scopus 로고    scopus 로고
    • Presence and growth of naturalized Escherichia coli in temperate soils from Lake Superior watersheds
    • Ishii, S., W. B. Ksoll, R. E. Hicks, and M. J. Sadowsky. 2006. Presence and growth of naturalized Escherichia coli in temperate soils from Lake Superior watersheds. Appl. Environ. Microbiol. 72:612-621.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 612-621
    • Ishii, S.1    Ksoll, W.B.2    Hicks, R.E.3    Sadowsky, M.J.4
  • 35
  • 36
    • 0026759750 scopus 로고
    • DNA base sequence variability in katF (putative sigma factor) gene of Escherichia coli
    • Ivanova, A., M. Renshaw, R. V. Guntaka, and A. Eisenstark. 1992. DNA base sequence variability in katF (putative sigma factor) gene of Escherichia coli. Nucleic Acids Res. 20:5479-5480.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 5479-5480
    • Ivanova, A.1    Renshaw, M.2    Guntaka, R.V.3    Eisenstark, A.4
  • 37
    • 49249112719 scopus 로고    scopus 로고
    • The shape of an ecological tradeoff varies with environment
    • Jessup, C. M., and B. J. Bohannan. 2008. The shape of an ecological tradeoff varies with environment. Ecol. Lett. 11:947-959.
    • (2008) Ecol. Lett. , vol.11 , pp. 947-959
    • Jessup, C.M.1    Bohannan, B.J.2
  • 38
    • 0029810991 scopus 로고    scopus 로고
    • Regulation of RNA polymerase sigma subunit synthesis in Escherichia coli: intracellular levels of four species of sigma subunit under various growth conditions
    • Jishage, M., A. Iwata, S. Ueda, and A. Ishihama. 1996. Regulation of RNA polymerase sigma subunit synthesis in Escherichia coli: intracellular levels of four species of sigma subunit under various growth conditions. J. Bacteriol. 178:5447-5451.
    • (1996) J. Bacteriol. , vol.178 , pp. 5447-5451
    • Jishage, M.1    Iwata, A.2    Ueda, S.3    Ishihama, A.4
  • 39
    • 0032792644 scopus 로고    scopus 로고
    • Use of single-strand conformation polymorphism analysis to examine the variability of the rpoS sequence in environmental isolates of salmonellae
    • Jordan, S. J., C. E. Dodd, and G. S. Stewart. 1999. Use of single-strand conformation polymorphism analysis to examine the variability of the rpoS sequence in environmental isolates of salmonellae. Appl. Environ. Microbiol. 65:3582-3587.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 3582-3587
    • Jordan, S.J.1    Dodd, C.E.2    Stewart, G.S.3
  • 40
    • 0014421064 scopus 로고
    • Evolutionary rate at the molecular level
    • Kimura, M. 1968. Evolutionary rate at the molecular level. Nature 217:624-626.
    • (1968) Nature , vol.217 , pp. 624-626
    • Kimura, M.1
  • 41
    • 4344633752 scopus 로고    scopus 로고
    • A regulatory trade-off as a source of strain variation in the species Escherichia coli
    • King, T., A. Ishihama, A. Kori, and T. Ferenci. 2004. A regulatory trade-off as a source of strain variation in the species Escherichia coli. J. Bacteriol. 186:5614-5620.
    • (2004) J. Bacteriol. , vol.186 , pp. 5614-5620
    • King, T.1    Ishihama, A.2    Kori, A.3    Ferenci, T.4
  • 42
    • 33646181748 scopus 로고    scopus 로고
    • Genotype-by-environment interactions influencing the emergence of rpoS mutations in Escherichia coli populations
    • King, T., S. Seeto, and T. Ferenci. 2006. Genotype-by-environment interactions influencing the emergence of rpoS mutations in Escherichia coli populations. Genetics 172:2071-2079.
    • (2006) Genetics , vol.172 , pp. 2071-2079
    • King, T.1    Seeto, S.2    Ferenci, T.3
  • 43
    • 0019754811 scopus 로고
    • Transposable elements in prokaryotes
    • Kleckner, N. 1981. Transposable elements in prokaryotes. Annu. Rev. Genet. 15:341-404.
    • (1981) Annu. Rev. Genet. , vol.15 , pp. 341-404
    • Kleckner, N.1
  • 44
    • 6044228192 scopus 로고    scopus 로고
    • SigmaS-dependent gene expression at the onset of stationary phase in Escherichia coli: function of sigmaS-dependent genes and identification of their promoter sequences
    • Lacour, S., and P. Landini. 2004. SigmaS-dependent gene expression at the onset of stationary phase in Escherichia coli: function of sigmaS-dependent genes and identification of their promoter sequences. J. Bacteriol. 186:7186-7195.
    • (2004) J. Bacteriol. , vol.186 , pp. 7186-7195
    • Lacour, S.1    Landini, P.2
  • 45
    • 0026020230 scopus 로고
    • Identification of a central regulator of stationary-phase gene expression in Escherichia coli
    • Lange, R., and R. Hengge-Aronis. 1991. Identification of a central regulator of stationary-phase gene expression in Escherichia coli. Mol. Microbiol. 5: 49-59.
    • (1991) Mol. Microbiol. , vol.5 , pp. 49-59
    • Lange, R.1    Hengge-Aronis, R.2
  • 46
    • 36448991500 scopus 로고    scopus 로고
    • Clustal W and Clustal X version 2.0
    • Larkin, M. A., et al. 2007. Clustal W and Clustal X version 2.0. Bioinformatics 23:2947-2948.
    • (2007) Bioinformatics , vol.23 , pp. 2947-2948
    • Larkin, M.A.1
  • 47
    • 0142062024 scopus 로고    scopus 로고
    • Error-prone DNA polymerase IV is controlled by the stress-response sigma factor, RpoS, in Escherichia coli
    • Layton, J. C., and P. L. Foster. 2003. Error-prone DNA polymerase IV is controlled by the stress-response sigma factor, RpoS, in Escherichia coli. Mol. Microbiol. 50:549-561.
    • (2003) Mol. Microbiol. , vol.50 , pp. 549-561
    • Layton, J.C.1    Foster, P.L.2
  • 48
    • 40449127567 scopus 로고    scopus 로고
    • Metabolic changes associated with adaptive diversification in Escherichia coli
    • Le Gac, M., et al. 2008. Metabolic changes associated with adaptive diversification in Escherichia coli. Genetics 178:1049-1060.
    • (2008) Genetics , vol.178 , pp. 1049-1060
    • Le Gac, M.1
  • 49
    • 78149294782 scopus 로고    scopus 로고
    • Molecular and evolutionary bases of within-patient genotypic and phenotypic diversity in Escherichia coli extraintestinal infections
    • Levert, M., et al. 2010. Molecular and evolutionary bases of within-patient genotypic and phenotypic diversity in Escherichia coli extraintestinal infections. PLoS Pathog. 6:e1001125.
    • (2010) PLoS Pathog , vol.6
    • Levert, M.1
  • 52
    • 1642354817 scopus 로고    scopus 로고
    • General stress response regulator RpoS in adaptive mutation and amplification in Escherichia coli
    • Lombardo, M. J., I. Aponyi, and S. M. Rosenberg. 2004. General stress response regulator RpoS in adaptive mutation and amplification in Escherichia coli. Genetics 166:669-680.
    • (2004) Genetics , vol.166 , pp. 669-680
    • Lombardo, M.J.1    Aponyi, I.2    Rosenberg, S.M.3
  • 53
    • 0037509909 scopus 로고    scopus 로고
    • Regulation of short-chain fatty acid production
    • Macfarlane, S., and G. T. Macfarlane. 2003. Regulation of short-chain fatty acid production. Proc. Nutr. Soc. 62:67-72.
    • (2003) Proc. Nutr. Soc. , vol.62 , pp. 67-72
    • Macfarlane, S.1    Macfarlane, G.T.2
  • 54
    • 33746615552 scopus 로고    scopus 로고
    • Clonal adaptive radiation in a constant environment
    • Maharjan, R., S. Seeto, L. Notley-McRobb, and T. Ferenci. 2006. Clonal adaptive radiation in a constant environment. Science 313:514-517.
    • (2006) Science , vol.313 , pp. 514-517
    • Maharjan, R.1    Seeto, S.2    Notley-McRobb, L.3    Ferenci, T.4
  • 56
    • 4143079488 scopus 로고    scopus 로고
    • Genetic diversity of Escherichia coli isolated from urban rivers and beach water
    • McLellan, S. L. 2004. Genetic diversity of Escherichia coli isolated from urban rivers and beach water. Appl. Environ. Microbiol. 70:4658-4665.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 4658-4665
    • McLellan, S.L.1
  • 57
    • 0037992680 scopus 로고    scopus 로고
    • Evidence for localized bacterial loading as the cause of chronic beach closings in a freshwater marina
    • McLellan, S. L., and A. K. Salmore. 2003. Evidence for localized bacterial loading as the cause of chronic beach closings in a freshwater marina. Water Res. 37:2700-2708.
    • (2003) Water Res. , vol.37 , pp. 2700-2708
    • McLellan, S.L.1    Salmore, A.K.2
  • 59
    • 1342281329 scopus 로고    scopus 로고
    • Glycolytic and gluconeogenic growth of Escherichia coli O157: H7 (EDL933) and E. coli K-12 (MG1655) in the mouse intestine
    • Miranda, R. L., et al. 2004. Glycolytic and gluconeogenic growth of Escherichia coli O157:H7 (EDL933) and E. coli K-12 (MG1655) in the mouse intestine. Infect. Immun. 72:1666-1676.
    • (2004) Infect. Immun. , vol.72 , pp. 1666-1676
    • Miranda, R.L.1
  • 60
    • 34548759740 scopus 로고    scopus 로고
    • Interaction and influence of two creeks on Escherichia coli concentrations of nearby beaches: exploration of predictability and mechanisms
    • Nevers, M. B., R. L. Whitman, W. E. Frick, and Z. Ge. 2007. Interaction and influence of two creeks on Escherichia coli concentrations of nearby beaches: exploration of predictability and mechanisms. J. Environ. Qual. 36:1338-1345.
    • (2007) J. Environ. Qual. , vol.36 , pp. 1338-1345
    • Nevers, M.B.1    Whitman, R.L.2    Frick, W.E.3    Ge, Z.4
  • 61
    • 0036181664 scopus 로고    scopus 로고
    • rpoS mutations and loss of general stress resistance in Escherichia coli populations as a consequence of conflict between competing stress responses
    • Notley-McRobb, L., T. King, and T. Ferenci. 2002. rpoS mutations and loss of general stress resistance in Escherichia coli populations as a consequence of conflict between competing stress responses. J. Bacteriol. 184:806-811.
    • (2002) J. Bacteriol. , vol.184 , pp. 806-811
    • Notley-McRobb, L.1    King, T.2    Ferenci, T.3
  • 62
    • 8544232750 scopus 로고    scopus 로고
    • Growth versus maintenance: a trade-off dictated by RNA polymerase availability and sigma factor competition? Mol
    • Nyström, T. 2004. Growth versus maintenance: a trade-off dictated by RNA polymerase availability and sigma factor competition? Mol. Microbiol. 54: 855-862.
    • (2004) Microbiol , vol.54 , pp. 855-862
    • Nyström, T.1
  • 63
    • 0021367325 scopus 로고
    • Standard reference strains of Escherichia coli from natural populations
    • Ochman, H., and R. K. Selander. 1984. Standard reference strains of Escherichia coli from natural populations. J. Bacteriol. 157:690-693.
    • (1984) J. Bacteriol. , vol.157 , pp. 690-693
    • Ochman, H.1    Selander, R.K.2
  • 66
    • 79955767137 scopus 로고    scopus 로고
    • A comparative genome analysis of the RpoS-sigmulon shows a high diversity of responses and origins
    • Santos-Zavaleta, A., S. Gama-Castro, and E. Perez-Rueda. 2011. A comparative genome analysis of the RpoS-sigmulon shows a high diversity of responses and origins. Microbiology 157:1393-1401.
    • (2011) Microbiology , vol.157 , pp. 1393-1401
    • Santos-Zavaleta, A.1    Gama-Castro, S.2    Perez-Rueda, E.3
  • 67
    • 0023780699 scopus 로고
    • Transcriptional regulation of katE in Escherichia coli K-12
    • Schellhorn, H. E., and H. M. Hassan. 1988. Transcriptional regulation of katE in Escherichia coli K-12. J. Bacteriol. 170:4286-4292.
    • (1988) J. Bacteriol. , vol.170 , pp. 4286-4292
    • Schellhorn, H.E.1    Hassan, H.M.2
  • 68
    • 0026710387 scopus 로고
    • Regulation of katF and katE in Escherichia coli K-12 by weak acids
    • Schellhorn, H. E., and V. L. Stones. 1992. Regulation of katF and katE in Escherichia coli K-12 by weak acids. J. Bacteriol. 174:4769-4776.
    • (1992) J. Bacteriol. , vol.174 , pp. 4769-4776
    • Schellhorn, H.E.1    Stones, V.L.2
  • 69
    • 0023274170 scopus 로고
    • The rate of synonymous substitution in enterobacterial genes is inversely related to codon usage bias
    • Sharp, P. M., and W. H. Li. 1987. The rate of synonymous substitution in enterobacterial genes is inversely related to codon usage bias. Mol. Biol. Evol. 4:222-230.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 222-230
    • Sharp, P.M.1    Li, W.H.2
  • 70
    • 0028324804 scopus 로고
    • Acid and base resistance in Escherichia coli and Shigella flexneri: role of rpoS and growth pH
    • Small, P., D. Blankenhorn, D. Welty, E. Zinser, and J. L. Slonczewski. 1994. Acid and base resistance in Escherichia coli and Shigella flexneri: role of rpoS and growth pH. J. Bacteriol. 176:1729-1737.
    • (1994) J. Bacteriol. , vol.176 , pp. 1729-1737
    • Small, P.1    Blankenhorn, D.2    Welty, D.3    Zinser, E.4    Slonczewski, J.L.5
  • 71
    • 73449104573 scopus 로고    scopus 로고
    • Compensatory evolution of gene regulation in response to stress by Escherichia coli lacking RpoS
    • Stoebel, D. M., K. Hokamp, M. S. Last, and C. J. Dorman. 2009. Compensatory evolution of gene regulation in response to stress by Escherichia coli lacking RpoS. PLoS Genet. 5:e1000671.
    • (2009) PLoS Genet. , vol.5
    • Stoebel, D.M.1    Hokamp, K.2    Last, M.S.3    Dorman, C.J.4
  • 72
    • 1042288638 scopus 로고    scopus 로고
    • A comparative study of variation in codon 33 of the rpoS gene in Escherichia coli K12 stocks: implications for the synthesis of sigma(s)
    • Subbarayan, P. R., and M. Sarkar. 2004. A comparative study of variation in codon 33 of the rpoS gene in Escherichia coli K12 stocks: implications for the synthesis of sigma(s). Mol. Genet. Genomics 270:533-538.
    • (2004) Mol. Genet. Genomics , vol.270 , pp. 533-538
    • Subbarayan, P.R.1    Sarkar, M.2
  • 73
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura, K., J. Dudley, M. Nei, and S. Kumar. 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-1599.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 75
    • 0030840083 scopus 로고    scopus 로고
    • RpoS- and OxyR-independent induction of HPI catalase at stationary phase in Escherichia coli and identification of rpoS mutations in common laboratory strains
    • Visick, J. E., and S. Clarke. 1997. RpoS- and OxyR-independent induction of HPI catalase at stationary phase in Escherichia coli and identification of rpoS mutations in common laboratory strains. J. Bacteriol. 179:4158-4163.
    • (1997) J. Bacteriol. , vol.179 , pp. 4158-4163
    • Visick, J.E.1    Clarke, S.2
  • 76
    • 0029972010 scopus 로고    scopus 로고
    • Characterization of the acid resistance phenotype and rpoS alleles of shiga-like toxin-producing Escherichia coli
    • Waterman, S. R., and P. L. Small. 1996. Characterization of the acid resistance phenotype and rpoS alleles of shiga-like toxin-producing Escherichia coli. Infect. Immun. 64:2808-2811.
    • (1996) Infect. Immun. , vol.64 , pp. 2808-2811
    • Waterman, S.R.1    Small, P.L.2
  • 77
    • 14244256556 scopus 로고    scopus 로고
    • Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity
    • Weber, H., T. Polen, J. Heuveling, V. F. Wendisch, and R. Hengge. 2005. Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity. J. Bacteriol. 187:1591-1603.
    • (2005) J. Bacteriol. , vol.187 , pp. 1591-1603
    • Weber, H.1    Polen, T.2    Heuveling, J.3    Wendisch, V.F.4    Hengge, R.5
  • 78
    • 0141704576 scopus 로고    scopus 로고
    • Foreshore sand as a source of Escherichia coli in nearshore water of a Lake Michigan beach
    • Whitman, R. L., and M. B. Nevers. 2003. Foreshore sand as a source of Escherichia coli in nearshore water of a Lake Michigan beach. Appl. Environ. Microbiol. 69:5555-5562.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 5555-5562
    • Whitman, R.L.1    Nevers, M.B.2
  • 79
    • 58149161876 scopus 로고    scopus 로고
    • Summer E. coli patterns and responses along 23 Chicago beaches
    • Whitman, R. L., and M. B. Nevers. 2008. Summer E. coli patterns and responses along 23 Chicago beaches. Environ. Sci. Technol. 42:9217-9224.
    • (2008) Environ. Sci. Technol. , vol.42 , pp. 9217-9224
    • Whitman, R.L.1    Nevers, M.B.2
  • 80
    • 33751004137 scopus 로고    scopus 로고
    • Examination of the watershed-wide distribution of Escherichia coli along Southern Lake Michigan: an integrated approach
    • Whitman, R. L., M. B. Nevers, and M. N. Byappanahalli. 2006. Examination of the watershed-wide distribution of Escherichia coli along Southern Lake Michigan: an integrated approach. Appl. Environ. Microbiol. 72:7301-7310.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 7301-7310
    • Whitman, R.L.1    Nevers, M.B.2    Byappanahalli, M.N.3
  • 81
    • 79952793415 scopus 로고    scopus 로고
    • Second-order selection for evolvability in a large Escherichia coli population
    • Woods, R. J., et al. 2011. Second-order selection for evolvability in a large Escherichia coli population. Science 331:1433-1436.
    • (2011) Science , vol.331 , pp. 1433-1436
    • Woods, R.J.1
  • 82
    • 50149112177 scopus 로고    scopus 로고
    • Accumulation of mutants in "aging" bacterial colonies is due to growth under selection, not stress-induced mutagenesis
    • Wrande, M., J. R. Roth, and D. Hughes. 2008. Accumulation of mutants in "aging" bacterial colonies is due to growth under selection, not stress-induced mutagenesis. Proc. Natl. Acad. Sci. U. S. A. 105:11863-11868.
    • (2008) Proc. Natl. Acad. Sci. U. S. A. , vol.105 , pp. 11863-11868
    • Wrande, M.1    Roth, J.R.2    Hughes, D.3
  • 83
    • 0030602818 scopus 로고    scopus 로고
    • GASPing for life in stationary phase
    • Zambrano, M. M., and R. Kolter. 1996. GASPing for life in stationary phase. Cell 86:181-184.
    • (1996) Cell , vol.86 , pp. 181-184
    • Zambrano, M.M.1    Kolter, R.2
  • 84
    • 0027510647 scopus 로고
    • Microbial competition: Escherichia coli mutants that take over stationary phase cultures
    • Zambrano, M. M., D. A. Siegele, M. Almiron, A. Tormo, and R. Kolter. 1993. Microbial competition: Escherichia coli mutants that take over stationary phase cultures. Science 259:1757-1760.
    • (1993) Science , vol.259 , pp. 1757-1760
    • Zambrano, M.M.1    Siegele, D.A.2    Almiron, M.3    Tormo, A.4    Kolter, R.5
  • 85
    • 2942650309 scopus 로고    scopus 로고
    • Escherichia coli evolution during stationary phase
    • Zinser, E. R., and R. Kolter. 2004. Escherichia coli evolution during stationary phase. Res. Microbiol. 155:328-336.
    • (2004) Res. Microbiol. , vol.155 , pp. 328-336
    • Zinser, E.R.1    Kolter, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.