RpoS- and oxyR-independent induction of HPI catalase at stationary phase in Escherichia coli and identification of rpoS mutations in common laboratory strains

Journal of Bacteriology

Volumn 179, Issue 13, 1997, Pages 4158-4163

  Visick, Jonathan E ^a   Clarke, Steven ^a,b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b Box 951569 ^*  (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CATALASE;

ARTICLE; BACTERIAL MUTATION; ENZYME ANALYSIS; ESCHERICHIA COLI; OXIDATIVE STRESS; PRIORITY JOURNAL; QUANTITATIVE DIAGNOSIS; SPECTROPHOTOMETRY; STRAIN DIFFERENCE; THERMOSTABILITY;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 0030840083     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/jb.179.13.4158-4163.1997     Document Type: Article

References (45)

1. Bandaru, B., J. Gopal, and A. S. Bhagwat. 1996. Overproduction of DNA cytosine methyltransferase causes methylation and C→T mutations at non-canonical sites. J. Biol. Chem. 271:7851-7859.
2. Beers, R. F., Jr., and I. W. Sizer. 1951. A spectrophotometric method for measuring the breakdown of hydrogen peroxide by catalase. J. Biol. Chem. 196:133-140.
3. Casadaban, M. J., and S. N. Cohen. 1980. Analysis of gene control signals by DNA fusion and cloning in Escherichia coli. J. Mol. Biol. 138:179-207.
4. Christman, M. F., R. W. Morgan, F. S. Jacobson, and B. N. Ames. 1985. Positive control of a regulon for defenses against oxidative stress and some heat-shock proteins in Salmonella typhimurium. Cell 41:753-762.
5. Clare, D. A., M. N. Duong, D. Darr, F. Archibald, and I. Fridovich. 1984. Effects of molecular oxygen on detection of superoxide radical with nitroblue tetrazolium and on activity stains for catalase. Anal. Biochem. 140:532-537.
6. Farr, S. B., and T. Kogoma. 1991. Oxidative stress responses in Escherichia coli and Salmonella typhimurium. Microbiol. Rev. 55:561-585.
7. Fu, J. C., L. Ding, and S. Clarke. 1991. Purification, gene cloning, and sequence analysis of an L-isoaspartyl protein carboxyl methyltransferase from Escherichia coli. J. Biol. Chem. 266:14562-14572.
8. González-Flecha, B., and B. Demple. 1995. Metabolic sources of hydrogen peroxide in aerobically growing Escherichia coli. J. Biol. Chem. 270:13681-13687.
9. González-Flecha, B., and B. Demple. 1997. Homeostatic regulation of intracellular hydrogen peroxide concentration in aerobically growing Escherichia coli. J. Bacteriol. 179:382-388.
10. Gregory, E. M., and I. Fridovich. 1974. Visualization of catalase on acrylamide gels. Anal. Biochem. 58:57-62.
11. Gussow, D., and T. Clackson. 1989. Direct clone characterization from plaques and colonies by the polymerase chain reaction. Nucleic Acids Res. 17:4000.
12. Hausladen, A., C. T. Privalle, T. Keng, J. DeAngelo, and J. S. Stamler. 1996. Nitrosative stress: activation of the transcription factor OxyR. Cell 86:719-729.
13. Horii, Z. I., and A. J. Clark. 1973. Genetic analysis of the RecF pathway to genetic recombination in Escherichia coli K-12: isolation and characterization of mutants. J. Mol. Biol. 80:327-344.
14. Howard-Flanders, P., E. Simson, and L. Theriot. 1964. A locus that controls filament formation and sensitivity to radiation in Escherichia coli K-12. Genetics 49:237-246.
15. Huisman, G., and R. Kolter. 1994. Regulation of gene expression at the onset of stationary phase in Escherichia coli, p. 21-40. In P. Piggot, C. P. Moran, Jr., and P. Youngman (ed.), Regulation of bacterial differentiation. American Society for Microbiology, Washington, D.C.
16. Ivanova, A., C. Miller, G. Glinsky, and A. Eisenstark. 1994. Role of rpoS (katF) in oxyR-independent regulation of hydroperoxidase I in Escherichia coli. Mol. Microbiol. 12:571-578.
17. Ivanova, A., M. Renshaw, R. V. Guntaka, and A. Eisenstark. 1992. DNA base sequence variability in katF (putative sigma factor) gene of Escherichia coli. Nucleic Acids Res. 20:5479-5480.
18. Jishage, M., and A. Ishihama. 1997. Variation in RNA polymerase sigma subunit composition within different stocks of Escherichia coli W3110. J. Bacteriol. 179:959-963.
19. Laemmli, U. K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680-685.
20. S subunit of RNA polymerase in Escherichia coli is controlled at the levels of transcription, translation, and protein stability. Genes Dev. 8:1600-1612.
21. Li, C., and S. Clarke. 1992. A protein methyltransferase specific for altered aspartyl residues is important in Escherichia coli stationary-phase survival and heat-shock resistance. Proc. Natl. Acad. Sci. USA 89:9885-9889.
22. Li, C., J. K. Ichikawa, J. J. Ravetto, H.-C. Kuo, J. C. Fu, and S. Clarke. 1994. A new gene involved in stationary-phase survival located at 59 minutes on the Escherichia coli chromosome. J. Bacteriol. 176:6015-6022.
23. S (KatF) in bacterial global regulation. Annu. Rev. Microbiol. 48:53-80.
24. Loewen, P. C., J. Switala, and B. L. Triggs-Raine. 1985. Catalases HPI and HPII in Escherichia coli are induced independently. Arch. Biochem. Biophys. 243:144-149.
25. Loewen, P. C., and B. L. Triggs. 1984. Genetic mapping of katF, a locus that with katE affects the synthesis of a second catalase species in Escherichia coli. J. Bacteriol. 160:668-675.
26. Loewen, P. C., B. L. Triggs, C. S. George, and B. E. Hrabauchuk. 1985. Genetic mapping of katG, a locus that affects synthesis of the bifunctional catalase-peroxidase hydroperoxidase I in Escherichia coli. J. Bacteriol. 162: 661-667.
27. Lowry, O. H., N. J. Rosebrough, A. L. Farr, and R. J. Randall. 1951. Protein measurement with the Folin phenol reagent. J. Biol. Chem. 193:265-275.
28. Meir, E., and E. Yagil. 1985. Further characterization of the two catalases in Escherichia coli. Curr. Microbiol. 12:315-320.
29. Mulvey, M. R., P. A. Sorby, B. L. Triggs-Raine, and P. C. Loewen. 1988. Cloning and physical characterization of katE and katF required for catalase HPII expression in Escherichia coli. Gene 73:337-345.
30. Mulvey, M. R., J. Switala, A. Borys, and P. C. Loewen. 1990. Regulation of transcription of katE and katF in Escherichia coli. J. Bacteriol. 172:6713-6720.
31. Parker, J. 1989. Errors and alternatives in reading the universal genetic code. Microbiol. Rev. 53:273-298.
32. Pearson, M. L. 1972. The role of adenosine-3′-5′-cyclic monophosphate in the growth of bacteriophage lambda. Virology 49:605-609.
33. Rorth, M., and P. K. Jensen. 1967. Determination of catalase activity by means of the Clark oxygen electrode. Biochim. Biophys. Acta 139:171-173.
34. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Press, Cold Spring Harbor, N.Y.
35. Schellhorn, H. E. 1995. Regulation of hydroperoxidase (catalase) expression in Escherichia coli. FEMS Microbiol. Lett. 131:113-119.
36. Silhavy, T. J., M. L. Berman, and L. W. Enquist. 1984. Experiments with gene fusions. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
37. Storz, G., L. A. Tartaglia, and B. N. Ames. 1990. Transcriptional regulator of oxidative stress-inducible genes: direct activation by oxidation. Science 248: 189-194.
38. Strom, A. R., and I. Kaasen. 1993. Trehalose metabolism in Escherichia coli: stress protection and stress regulation of gene expression. Mol. Microbiol. 8:205-210.
39. Styrvold, O. B., and A. R. Strøm. 1991. Synthesis, accumulation, and excretion of trehalose in osmotically stressed Escherichia coli K-12 strains: influence of amber suppressors and function of the periplasmic trehalase. J. Bacteriol. 173:1187-1192.
40. Taylor, M., and C. Yanofsky. 1964. Transformation of bacterial markers and transfer of phage markers with DNA isolated from λ-Φ-80 hybrid phage carrying the tryptophan genes of E. coli. Biochem. Biophys. Res. Commun. 17:798-804.
41. Toledano, M. B., I. Kullik, F. Trinh, P. T. Baird, T. D. Schneider, and G. Storz. 1994. Redox-dependent shift of OxyR-DNA contacts along an extended DNA-binding site: a mechanism for differential promoter selection. Cell 78:897-909.
42. Visick, J. E., and S. Clarke. 1995. Repair, refold, recycle: how bacteria can deal with spontaneous and environmental damage to proteins. Mol. Microbiol. 16:835-845.
43. Winans, S. C., S. J. Elledge, J. H. Kreuger, and G. C. Walker. 1985. Site-directed insertion and deletion mutagenesis with cloned fragments in Escherichia coli. J. Bacteriol. 161:1219-1221.
44. Zambrano, M. M., and R. Kolter. 1996. GASPing for life in stationary phase. Cell 86:181-184.
45. Zambrano, M. M., D. A. Siegele, M. Almirón, A. Tormo, and R. Kolter. 1993. Microbial competition: Escherichia coli mutants that take over stationary phase cultures. Science 259:1757-1760.