-
2
-
-
0036022481
-
Marinitoga piezophila sp. nov., a rod-shaped, thermopiezophilic bacterium isolated under high hydrostatic pressure from a deepsea hydrothermal vent
-
Alain, K., et al. 2002. Marinitoga piezophila sp. nov., a rod-shaped, thermopiezophilic bacterium isolated under high hydrostatic pressure from a deepsea hydrothermal vent. Int. J. Syst. Evol. Microbiol. 52:1331-1339.
-
(2002)
Int. J. Syst. Evol. Microbiol.
, vol.52
, pp. 1331-1339
-
-
Alain, K.1
-
3
-
-
0347297272
-
Desulfovibrio hydrothermalis sp. nov., a novel sulfatereducing bacterium isolated from hydrothermal vents
-
Alazard, D., et al. 2003. Desulfovibrio hydrothermalis sp. nov., a novel sulfatereducing bacterium isolated from hydrothermal vents. Int. J. Syst. Evol. Microbiol. 53:173-178.
-
(2003)
Int. J. Syst. Evol. Microbiol.
, vol.53
, pp. 173-178
-
-
Alazard, D.1
-
4
-
-
0032914127
-
Monounsaturated but not polyunsaturated fatty acids are required for growth at high pressure and low temperature in the deep-sea bacterium Photobacterium profundum strain SS9
-
Allen, E. E., D. Facciotti, and D. H. Bartlett. 1999. Monounsaturated but not polyunsaturated fatty acids are required for growth at high pressure and low temperature in the deep-sea bacterium Photobacterium profundum strain SS9. Appl. Environ. Microbiol. 65:1710-1720.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 1710-1720
-
-
Allen, E.E.1
Facciotti, D.2
Bartlett, D.H.3
-
5
-
-
70349456541
-
The genome sequence of the psychrophilic archaeon Methanococcoides burtonii: the role of genome evolution in cold adaptation
-
Allen, M. A., et al. 2009. The genome sequence of the psychrophilic archaeon, Methanococcoides burtonii: the role of genome evolution in cold adaptation. ISME J. 3:1012-1035.
-
(2009)
ISME J
, vol.3
, pp. 1012-1035
-
-
Allen, M.A.1
-
6
-
-
67949124536
-
Microbial oceanography of the dark ocean's pelagic realm
-
Arístegui, J., J. M. Gasol, C. M. Duarte, and G. J. Herndl. 2009. Microbial oceanography of the dark ocean's pelagic realm. Limnol. Oceanogr. 54: 1501-1529.
-
(2009)
Limnol. Oceanogr.
, vol.54
, pp. 1501-1529
-
-
Arístegui, J.1
Gasol, J.M.2
Duarte, C.M.3
Herndl, G.J.4
-
7
-
-
0030899619
-
Desulfovibrio profundus sp. nov., a novel barophilic sulfate-reducing bacterium from deep sediment layers in the Japan Sea
-
Bale, S. J., et al. 1997. Desulfovibrio profundus sp. nov., a novel barophilic sulfate-reducing bacterium from deep sediment layers in the Japan Sea. Int. J. Syst. Bacteriol. 47:515-521.
-
(1997)
Int. J. Syst. Bacteriol.
, vol.47
, pp. 515-521
-
-
Bale, S.J.1
-
8
-
-
39749132596
-
Microbial adaptation to high pressure
-
C. Gerday and N. Glandsdorf (ed.), ASM Press, Washington, DC
-
Bartlett, D. H., F. M. Lauro, and E. A. Eloe. 2007. Microbial adaptation to high pressure, p. 333-350. In C. Gerday and N. Glandsdorf (ed.), Physiology and biochemistry of extremophiles. ASM Press, Washington, DC.
-
(2007)
Physiology and biochemistry of extremophiles
, pp. 333-350
-
-
Bartlett, D.H.1
Lauro, F.M.2
Eloe, E.A.3
-
9
-
-
0001125889
-
High pressure enhances the growth rate of the thermophilic archaebacterium Methanococcus thermolithotrophicus without extending its temperature range
-
Bernhardt, G., R. Jaenicke, H. D. Lüdemann, H. König, and K. O. Stetter. 1988. High pressure enhances the growth rate of the thermophilic archaebacterium Methanococcus thermolithotrophicus without extending its temperature range. Appl. Environ. Microbiol. 54:1258-1261.
-
(1988)
Appl. Environ. Microbiol.
, vol.54
, pp. 1258-1261
-
-
Bernhardt, G.1
Jaenicke, R.2
Lüdemann, H.D.3
König, H.4
Stetter, K.O.5
-
10
-
-
44249083757
-
Occurrence and expression of gene transfer agent (GTA) genes in marine bacterioplankton
-
Biers, E. J., et al. 2008. Occurrence and expression of gene transfer agent (GTA) genes in marine bacterioplankton. Appl. Environ. Microbiol. 74: 2933-2939.
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 2933-2939
-
-
Biers, E.J.1
-
11
-
-
0021880980
-
Bacterial biovolume and biomass estimations
-
Bratbak, G. 1985. Bacterial biovolume and biomass estimations. Appl. Environ. Microbiol. 49:1488-1493.
-
(1985)
Appl. Environ. Microbiol.
, vol.49
, pp. 1488-1493
-
-
Bratbak, G.1
-
12
-
-
72649088719
-
Abundant transposases encoded by the metagenome of a hydrothermal chimney biofilm
-
Brazelton, W. J., and J. A. Baross. 2009. Abundant transposases encoded by the metagenome of a hydrothermal chimney biofilm. ISME J. 3:1420-1424.
-
(2009)
ISME J
, vol.3
, pp. 1420-1424
-
-
Brazelton, W.J.1
Baross, J.A.2
-
13
-
-
43949120140
-
Diversity, ecology, and genomics of the Roseobacter clade: a short overview
-
Brinkhoff, T., H. A. Giebel, and M. Simon. 2008. Diversity, ecology, and genomics of the Roseobacter clade: a short overview. Arch. Microbiol. 189: 531-539.
-
(2008)
Arch. Microbiol.
, vol.189
, pp. 531-539
-
-
Brinkhoff, T.1
Giebel, H.A.2
Simon, M.3
-
15
-
-
0027338910
-
Viability and isolation of marine bacteria by dilution culture: theory, procedures, and initial results
-
Button, D. K., F. Schut, P. Quang, R. Martin, and B. R. Robertson. 1993. Viability and isolation of marine bacteria by dilution culture: theory, procedures, and initial results. Appl. Environ. Microbiol. 59:881-891.
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 881-891
-
-
Button, D.K.1
Schut, F.2
Quang, P.3
Martin, R.4
Robertson, B.R.5
-
16
-
-
0030989775
-
Evolutionary relationships of cultivated psychrophilic and barophilic deep-sea bacteria
-
DeLong, E. F., D. G. Franks, and A. A. Yayanos. 1997. Evolutionary relationships of cultivated psychrophilic and barophilic deep-sea bacteria. Appl. Env. Microbiol. 63:2105-2108.
-
(1997)
Appl. Env. Microbiol.
, vol.63
, pp. 2105-2108
-
-
DeLong, E.F.1
Franks, D.G.2
Yayanos, A.A.3
-
17
-
-
31544483932
-
Community genomics among stratified microbial assemblages in the ocean's interior
-
DeLong, E. F., et al. 2006. Community genomics among stratified microbial assemblages in the ocean's interior. Science 311:496-503.
-
(2006)
Science
, vol.311
, pp. 496-503
-
-
DeLong, E.F.1
-
18
-
-
85024726292
-
Isolation of an obligately barophilic bacterium and description of a new genus
-
Deming, J. W., L. K. Somers, W. L. Straube, D. G. Swartz, and M. T. MacDonell. 1988. Isolation of an obligately barophilic bacterium and description of a new genus, Colwellia gen. nov. Syst. Appl. Microbiol. 10:152-160.
-
(1988)
Colwellia gen. nov. Syst. Appl. Microbiol.
, vol.10
, pp. 152-160
-
-
Deming, J.W.1
Somers, L.K.2
Straube, W.L.3
Swartz, D.G.4
MacDonell, M.T.5
-
19
-
-
0018115592
-
Silica gel media for isolating and studying bacteria under hydrostatic pressure
-
Dietz, A. S., and A. A. Yayanos. 1978. Silica gel media for isolating and studying bacteria under hydrostatic pressure. Appl. Environ. Microbiol. 36: 966-968.
-
(1978)
Appl. Environ. Microbiol.
, vol.36
, pp. 966-968
-
-
Dietz, A.S.1
Yayanos, A.A.2
-
20
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar, R. C. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
21
-
-
54949088268
-
The deep-sea bacterium Photobacterium profundum SS9 utilizes separate flagellar systems for swimming and swarming under high-pressure conditions
-
Eloe, E. A., F. M. Lauro, R. F. Vogel, and D. H. Bartlett. 2008. The deep-sea bacterium Photobacterium profundum SS9 utilizes separate flagellar systems for swimming and swarming under high-pressure conditions. Appl. Env. Microbiol. 74:6298-6305.
-
(2008)
Appl. Env. Microbiol.
, vol.74
, pp. 6298-6305
-
-
Eloe, E.A.1
Lauro, F.M.2
Vogel, R.F.3
Bartlett, D.H.4
-
22
-
-
80051921096
-
Compositional differences in particle-associated and free-living microbial assemblages from an extreme deep-ocean environment
-
Eloe, E. A., et al. 2011. Compositional differences in particle-associated and free-living microbial assemblages from an extreme deep-ocean environment. Environ. Microbiol. Rep. 3:449-458.
-
(2011)
Environ. Microbiol. Rep.
, vol.3
, pp. 449-458
-
-
Eloe, E.A.1
-
23
-
-
0027445161
-
Pyrococcus abyssi sp. nov., a new hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent
-
Erauso, G., et al. 1993. Pyrococcus abyssi sp. nov., a new hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent. Arch. Microbiol. 160:338-349.
-
(1993)
Arch. Microbiol.
, vol.160
, pp. 338-349
-
-
Erauso, G.1
-
24
-
-
83055166433
-
-
PHYLIP (Phylogeny Inference Package) version 3.6. J. Felsenstein, Department of Genome Sciences, University of Washington, Seattle, WA
-
Felsenstein, J. 2005. PHYLIP (Phylogeny Inference Package) version 3.6. J. Felsenstein, Department of Genome Sciences, University of Washington, Seattle, WA.
-
(2005)
-
-
Felsenstein, J.1
-
25
-
-
77954294154
-
High diversity of Rhodobacterales in the subarctic North Atlantic Ocean and gene transfer agent protein expression in isolated strains
-
Fu, Y., et al. 2010. High diversity of Rhodobacterales in the subarctic North Atlantic Ocean and gene transfer agent protein expression in isolated strains. Aquat. Microb. Ecol. 59:283-293.
-
(2010)
Aquat. Microb. Ecol.
, vol.59
, pp. 283-293
-
-
Fu, Y.1
-
26
-
-
0002508413
-
The polymerase chain reaction
-
E. Stackebrandt and M. Goodfellow (ed.), John Wiley & Sons, Inc., New York, NY
-
Giovannoni, S. J. 1991. The polymerase chain reaction, p. 177-203. In E. Stackebrandt and M. Goodfellow (ed.), Modern microbiological methods: nucleic acids techniques in bacterial systematics. John Wiley & Sons, Inc., New York, NY.
-
(1991)
Modern microbiological methods: nucleic acids techniques in bacterial systematics
, pp. 177-203
-
-
Giovannoni, S.J.1
-
27
-
-
65549158266
-
New cultivation strategies bring more microbial plankton species into the laboratory
-
Giovannoni, S. J., R. A. Foster, M. S. Rappé, and S. Epstein. 2007. New cultivation strategies bring more microbial plankton species into the laboratory. Oceanography 20:62-69.
-
(2007)
Oceanography
, vol.20
, pp. 62-69
-
-
Giovannoni, S.J.1
Foster, R.A.2
Rappé, M.S.3
Epstein, S.4
-
28
-
-
0030826790
-
Octadecabacter arcticus gen. nov., sp. nov., and O. antarcticus, sp. nov., nonpigmented, psychrophilic gas vacuolate bacteria from polar sea ice and water
-
Gosink, J. J., R. P. Herwig, and J. T. Staley. 1997. Octadecabacter arcticus gen. nov., sp. nov., and O. antarcticus, sp. nov., nonpigmented, psychrophilic gas vacuolate bacteria from polar sea ice and water. Syst. Appl. Microbiol. 20:356-365.
-
(1997)
Syst. Appl. Microbiol.
, vol.20
, pp. 356-365
-
-
Gosink, J.J.1
Herwig, R.P.2
Staley, J.T.3
-
29
-
-
33744923681
-
Remarkable heterogeneity in meso- and bathypelagic bacterioplankton assemblage composition
-
Hewson, I., J. A. Steele, D. G. Capone, and J. A. Fuhrman. 2006. Remarkable heterogeneity in meso- and bathypelagic bacterioplankton assemblage composition. Limnol. Oceanogr. 51:1274-1283.
-
(2006)
Limnol. Oceanogr.
, vol.51
, pp. 1274-1283
-
-
Hewson, I.1
Steele, J.A.2
Capone, D.G.3
Fuhrman, J.A.4
-
30
-
-
0000741545
-
Variability of pressure adaptation in deep sea bacteria
-
Jannasch, H. W., and C. O. Wirsen. 1984. Variability of pressure adaptation in deep sea bacteria. Arch. Microbiol. 139:281-288.
-
(1984)
Arch. Microbiol.
, vol.139
, pp. 281-288
-
-
Jannasch, H.W.1
Wirsen, C.O.2
-
31
-
-
0021070752
-
Methanococcus jannaschii sp. nov., an extremely thermophilic methanogen from a submarine hydrothermal vent
-
Jones, W. J., J. A. Leigh, F. Mayer, C. R. Woese, and R. S. Wolfe. 1983. Methanococcus jannaschii sp. nov., an extremely thermophilic methanogen from a submarine hydrothermal vent. Arch. Microbiol. 136:254-261.
-
(1983)
Arch. Microbiol.
, vol.136
, pp. 254-261
-
-
Jones, W.J.1
Leigh, J.A.2
Mayer, F.3
Woese, C.R.4
Wolfe, R.S.5
-
32
-
-
77953169216
-
grofit: fitting biological growth curves with R
-
Kahm, M., G. Hasenbrink, H. Lichtenberg-Frate, J. Ludwig, and M. Kschischo. 2010. grofit: fitting biological growth curves with R. J. Stat. Softw. 33:1-21.
-
(2010)
J. Stat. Softw.
, vol.33
, pp. 1-21
-
-
Kahm, M.1
Hasenbrink, G.2
Lichtenberg-Frate, H.3
Ludwig, J.4
Kschischo, M.5
-
33
-
-
78649373804
-
Genome sequence of the marine Alphaproteobacterium HTCC2150, assigned to the Roseobacter clade
-
Kang, I., H.-M. Oh, K. L. Vergin, S. J. Giovannoni, and J.-C. Cho. 2010. Genome sequence of the marine Alphaproteobacterium HTCC2150, assigned to the Roseobacter clade. J. Bacteriol. 192:6315-6316.
-
(2010)
J. Bacteriol.
, vol.192
, pp. 6315-6316
-
-
Kang, I.1
Oh, H.-M.2
Vergin, K.L.3
Giovannoni, S.J.4
Cho, J.-C.5
-
34
-
-
0031980181
-
Extremely barophilic bacteria isolated from the Mariana Trench, Challenger Deep, at a depth of 11, 000 meters
-
Kato, C., et al. 1998. Extremely barophilic bacteria isolated from the Mariana Trench, Challenger Deep, at a depth of 11,000 meters. Appl. Environ. Microbiol. 64:1510-1513.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 1510-1513
-
-
Kato, C.1
-
35
-
-
0029904521
-
Properties of obligately barophilic bacteria isolated from a sample of deep-sea sediment from the Izu-Bonin trench
-
Kato, C., N. Masui, and K. Horikoshi. 1996. Properties of obligately barophilic bacteria isolated from a sample of deep-sea sediment from the Izu-Bonin trench. J. Mar. Biotechnol. 4:96-99.
-
(1996)
J. Mar. Biotechnol.
, vol.4
, pp. 96-99
-
-
Kato, C.1
Masui, N.2
Horikoshi, K.3
-
36
-
-
0028976429
-
Isolation and properties of barophilic and barotolerant bacteria from deep-sea mud samples
-
Kato, C., T. Sato, and K. Horikoshi. 1995. Isolation and properties of barophilic and barotolerant bacteria from deep-sea mud samples. Biodivers. Conserv. 4:1-9.
-
(1995)
Biodivers. Conserv.
, vol.4
, pp. 1-9
-
-
Kato, C.1
Sato, T.2
Horikoshi, K.3
-
37
-
-
68549085316
-
Comparative metagenomic analysis of a microbial community residing at a depth of 4,000 meters at Station ALOHA in the North Pacific Subtropical Gyre
-
Konstantinidis, K. T., J. Braff, D. M. Karl, and E. F. DeLong. 2009. Comparative metagenomic analysis of a microbial community residing at a depth of 4,000 meters at Station ALOHA in the North Pacific Subtropical Gyre. Appl. Environ. Microbiol. 75:5345-5355.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 5345-5355
-
-
Konstantinidis, K.T.1
Braff, J.2
Karl, D.M.3
DeLong, E.F.4
-
38
-
-
33846659065
-
Importance of widespread gene transfer agent genes in alpha-proteobacteria
-
Lang, A. S., and J. T. Beatty. 2007. Importance of widespread gene transfer agent genes in alpha-proteobacteria. Trends Microbiol. 15:54-62.
-
(2007)
Trends Microbiol
, vol.15
, pp. 54-62
-
-
Lang, A.S.1
Beatty, J.T.2
-
39
-
-
38049006515
-
Prokaryotic lifestyles in deep sea habitats
-
Lauro, F. M., and D. H. Bartlett. 2008. Prokaryotic lifestyles in deep sea habitats. Extremophiles 12:15-25.
-
(2008)
Extremophiles
, vol.12
, pp. 15-25
-
-
Lauro, F.M.1
Bartlett, D.H.2
-
40
-
-
33846919848
-
The unique 16S rRNA genes of piezophiles reflect both phylogeny and adaptation
-
Lauro, F. M., R. A. Chastain, L. E. Blankenship, A. A. Yayanos, and D. H. Bartlett. 2007. The unique 16S rRNA genes of piezophiles reflect both phylogeny and adaptation. Appl. Environ. Microbiol. 73:838-845.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 838-845
-
-
Lauro, F.M.1
Chastain, R.A.2
Blankenship, L.E.3
Yayanos, A.A.4
Bartlett, D.H.5
-
41
-
-
0002671156
-
Bacteria and cyanobacteria associated with phytodetritus in the deep sea
-
Lochte, K., and C. M. Turley. 1988. Bacteria and cyanobacteria associated with phytodetritus in the deep sea. Nature 333:67-69.
-
(1988)
Nature
, vol.333
, pp. 67-69
-
-
Lochte, K.1
Turley, C.M.2
-
42
-
-
0036053784
-
Wide bacterial diversity associated with tubes of the vent worm Riftia pachyptila
-
López-García, P., F. Gaill, and D. Moreira. 2002. Wide bacterial diversity associated with tubes of the vent worm Riftia pachyptila. Environ. Microbiol. 4:204-215.
-
(2002)
Environ. Microbiol.
, vol.4
, pp. 204-215
-
-
López-García, P.1
Gaill, F.2
Moreira, D.3
-
43
-
-
2542523843
-
ARB: a software environment for sequence data
-
Ludwig, W., et al. 2004. ARB: a software environment for sequence data. Nucleic Acids Res. 32:1363-1371.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
-
44
-
-
77149170363
-
High-resolution imaging of pelagic bacteria by atomic force microscopy and implications for carbon cycling
-
Malfatti, F., T. J. Samo, and F. Azam. 2010. High-resolution imaging of pelagic bacteria by atomic force microscopy and implications for carbon cycling. ISME J. 4:427-439.
-
(2010)
ISME J
, vol.4
, pp. 427-439
-
-
Malfatti, F.1
Samo, T.J.2
Azam, F.3
-
45
-
-
52249098618
-
Enumeration of phytoplankton, bacteria, and viruses in marine samples
-
Marie, D., F. Partensky, D. Vaulot, and C. Brussaard. 2001. Enumeration of phytoplankton, bacteria, and viruses in marine samples. Curr. Protoc. Cytom. Chapter 11:Unit 11.11.
-
(2001)
Curr. Protoc. Cytom. Chapter 11:Unit 11.
, pp. 11
-
-
Marie, D.1
Partensky, F.2
Vaulot, D.3
Brussaard, C.4
-
46
-
-
0032924862
-
Thermococcus barophilus sp. nov., a new barophilic and hyperthermophilic archaeon isolated under high hydrostatic pressure from a deep-sea hydrothermal vent
-
Marteinsson, V. T., et al. 1999. Thermococcus barophilus sp. nov., a new barophilic and hyperthermophilic archaeon isolated under high hydrostatic pressure from a deep-sea hydrothermal vent. Int. J. Syst. Bacteriol. 49:351-359.
-
(1999)
Int. J. Syst. Bacteriol.
, vol.49
, pp. 351-359
-
-
Marteinsson, V.T.1
-
47
-
-
39149124249
-
Metagenomics of the Deep Mediterranean, a warm bathypelagic habitat
-
Martín-Cuadrado, A. B., et al. 2007. Metagenomics of the Deep Mediterranean, a warm bathypelagic habitat. PLoS One 2:e914.
-
(2007)
PLoS One
, vol.2
-
-
Martín-Cuadrado, A.B.1
-
48
-
-
0000519053
-
Pressure and temperature effects on growth and methane production of the extreme thermophile Methanococcus jannaschii
-
Miller, J. F., N. N. Shah, C. M. Nelson, J. M. Ludlow, and D. S. Clark. 1988. Pressure and temperature effects on growth and methane production of the extreme thermophile Methanococcus jannaschii. Appl. Environ. Microbiol. 54:3039-3042.
-
(1988)
Appl. Environ. Microbiol.
, vol.54
, pp. 3039-3042
-
-
Miller, J.F.1
Shah, N.N.2
Nelson, C.M.3
Ludlow, J.M.4
Clark, D.S.5
-
50
-
-
34547150003
-
Ecological genomics of marine roseobacters
-
Moran, M. A., et al. 2007. Ecological genomics of marine roseobacters. Appl. Environ. Microbiol. 73:4559-4569.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 4559-4569
-
-
Moran, M.A.1
-
51
-
-
77954145249
-
Emerging concepts on microbial processes in the bathypelagic ocean-ecology, biogeochemistry, and genomics
-
Nagata, T., et al. 2010. Emerging concepts on microbial processes in the bathypelagic ocean-ecology, biogeochemistry, and genomics. Deep Sea Res. Pt. II. 57:1519-1536.
-
(2010)
Deep Sea Res. Pt. II.
, vol.57
, pp. 1519-1536
-
-
Nagata, T.1
-
52
-
-
0027945986
-
New method for isolating barophiles from intestinal contents of deep-sea fishes retrieved from the abyssal zone
-
Nakayama, A., Y. Yano, and K. Yoshida. 1994. New method for isolating barophiles from intestinal contents of deep-sea fishes retrieved from the abyssal zone. Appl. Environ. Microbiol. 60:4210-4212.
-
(1994)
Appl. Environ. Microbiol.
, vol.60
, pp. 4210-4212
-
-
Nakayama, A.1
Yano, Y.2
Yoshida, K.3
-
53
-
-
77952674525
-
Genome characteristics of a generalist marine bacterial lineage
-
Newton, R. J., et al. 2010. Genome characteristics of a generalist marine bacterial lineage. ISME J. 4:784-798.
-
(2010)
ISME J
, vol.4
, pp. 784-798
-
-
Newton, R.J.1
-
54
-
-
5444261180
-
Colwellia piezophila sp. nov., a novel piezophilic species from deep-sea sediments of the Japan Trench
-
Nogi, Y., S. Hosoya, C. Kato, and K. Horikoshi. 2004. Colwellia piezophila sp. nov., a novel piezophilic species from deep-sea sediments of the Japan Trench. Int. J. Syst. Evol. Microbiol. 54:1627-1631.
-
(2004)
Int. J. Syst. Evol. Microbiol.
, vol.54
, pp. 1627-1631
-
-
Nogi, Y.1
Hosoya, S.2
Kato, C.3
Horikoshi, K.4
-
55
-
-
34250743242
-
Psychromonas hadalis sp. nov., a novel piezophilic bacterium isolated from the bottom of the Japan Trench
-
Nogi, Y., S. Hosoya, C. Kato, and K. Horikoshi. 2007. Psychromonas hadalis sp. nov., a novel piezophilic bacterium isolated from the bottom of the Japan Trench. Int. J. Syst. Evol. Microbiol. 57:1360-1364.
-
(2007)
Int. J. Syst. Evol. Microbiol.
, vol.57
, pp. 1360-1364
-
-
Nogi, Y.1
Hosoya, S.2
Kato, C.3
Horikoshi, K.4
-
56
-
-
0032982459
-
Taxonomic studies of extremely barophilic bacteria isolated from the Mariana Trench and description of Moritella yayanosii sp. nov., a new barophilic bacterial isolate
-
Nogi, Y., and C. Kato. 1999. Taxonomic studies of extremely barophilic bacteria isolated from the Mariana Trench and description of Moritella yayanosii sp. nov., a new barophilic bacterial isolate. Extremophiles 3:71-77.
-
(1999)
Extremophiles
, vol.3
, pp. 71-77
-
-
Nogi, Y.1
Kato, C.2
-
57
-
-
0036740457
-
Psychromonas kaikoae sp. nov., a novel piezophilic bacterium from the deepest cold-seep sediments in the Japan Trench
-
Nogi, Y., C. Kato, and K. Horikoshi. 2002. Psychromonas kaikoae sp. nov., a novel piezophilic bacterium from the deepest cold-seep sediments in the Japan Trench. Int. J. Syst. Evol. Microbiol. 52:1527-1532.
-
(2002)
Int. J. Syst. Evol. Microbiol.
, vol.52
, pp. 1527-1532
-
-
Nogi, Y.1
Kato, C.2
Horikoshi, K.3
-
58
-
-
0031671525
-
Photobacterium profundum sp. nov., a new moderately barophilic bacterial species isolated from a deep-sea sediment
-
Nogi, Y., N. Masui, and C. Kato. 1998. Photobacterium profundum sp. nov., a new moderately barophilic bacterial species isolated from a deep-sea sediment. Extremophiles 2:1-7.
-
(1998)
Extremophiles
, vol.2
, pp. 1-7
-
-
Nogi, Y.1
Masui, N.2
Kato, C.3
-
59
-
-
34247535716
-
Virus and prokaryote enumeration from planktonic aquatic environments by epifluorescence microscopy with SYBR Green I
-
Patel, A., et al. 2007. Virus and prokaryote enumeration from planktonic aquatic environments by epifluorescence microscopy with SYBR Green I. Nat. Protoc. 2:269-276.
-
(2007)
Nat. Protoc.
, vol.2
, pp. 269-276
-
-
Patel, A.1
-
60
-
-
33745324987
-
Dermacoccus abyssi sp. nov., a piezotolerant actinomycete isolated from the Mariana Trench
-
Pathom-aree, W., et al. 2006. Dermacoccus abyssi sp. nov., a piezotolerant actinomycete isolated from the Mariana Trench. Int. J. Syst. Evol. Microbiol. 56:1233-1237.
-
(2006)
Int. J. Syst. Evol. Microbiol.
, vol.56
, pp. 1233-1237
-
-
Pathom-aree, W.1
-
61
-
-
33750014260
-
Dermacoccus barathri sp. nov. and Dermacoccus profundi sp. nov., novel actinomycetes isolated from deep-sea mud of the Mariana Trench
-
Pathom-aree, W., et al. 2006. Dermacoccus barathri sp. nov. and Dermacoccus profundi sp. nov., novel actinomycetes isolated from deep-sea mud of the Mariana Trench. Int. J. Syst. Evol. Microbiol. 56:2303-2307.
-
(2006)
Int. J. Syst. Evol. Microbiol.
, vol.56
, pp. 2303-2307
-
-
Pathom-aree, W.1
-
62
-
-
33144484401
-
Characterization of bacterial communities associated with deep-sea corals on Gulf of Alaska seamounts
-
Penn, K., D. Wu, J. A. Eisen, and N. Ward. 2006. Characterization of bacterial communities associated with deep-sea corals on Gulf of Alaska seamounts. Appl. Environ. Microbiol. 72:1680-1683.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 1680-1683
-
-
Penn, K.1
Wu, D.2
Eisen, J.A.3
Ward, N.4
-
63
-
-
48749116908
-
Phylogenetic analyses of ribosomal DNA-containing bacterioplankton genome fragments from a 4,000 m vertical profile in the North Pacific Subtropical Gyre
-
Pham, V. D., K. T. Konstantinidis, T. Palden, and E. F. DeLong. 2008. Phylogenetic analyses of ribosomal DNA-containing bacterioplankton genome fragments from a 4,000 m vertical profile in the North Pacific Subtropical Gyre. Environ. Microbiol. 10:2313-2330.
-
(2008)
Environ. Microbiol.
, vol.10
, pp. 2313-2330
-
-
Pham, V.D.1
Konstantinidis, K.T.2
Palden, T.3
DeLong, E.F.4
-
64
-
-
37549027613
-
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
-
Pruesse, E., et al. 2007. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res. 35:7188-7196.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 7188-7196
-
-
Pruesse, E.1
-
65
-
-
0037043731
-
Cultivation of the ubiquitous SAR11 marine bacterioplankton clade
-
Rappé, M. S., S. A. Connon, K. L. Vergin, and S. J. Giovannoni. 2002. Cultivation of the ubiquitous SAR11 marine bacterioplankton clade. Nature 418:630-633.
-
(2002)
Nature
, vol.418
, pp. 630-633
-
-
Rappé, M.S.1
Connon, S.A.2
Vergin, K.L.3
Giovannoni, S.J.4
-
66
-
-
0041935939
-
-
National Institutes of Health, Bethesda, MD
-
Rasband, W. S. 2009. ImageJ. National Institutes of Health, Bethesda, MD. http://rsb.info.nih.gov/ij/.
-
(2009)
ImageJ
-
-
Rasband, W.S.1
-
67
-
-
33947238287
-
The Sorcerer II global ocean sampling expedition: Northwest Atlantic through Eastern Tropical Pacific
-
Rusch, D. B., et al. 2007. The Sorcerer II global ocean sampling expedition: Northwest Atlantic through Eastern Tropical Pacific. PLoS Biol. 5:398-431.
-
(2007)
PLoS Biol
, vol.5
, pp. 398-431
-
-
Rusch, D.B.1
-
68
-
-
76349123164
-
Bacterial diversity and biogeography in deep-sea surface sediments of the South Atlantic Ocean
-
Schauer, R., C. Bienhold, A. Ramette, and J. Harder. 2010. Bacterial diversity and biogeography in deep-sea surface sediments of the South Atlantic Ocean. ISME J. 4:159-170.
-
(2010)
ISME J
, vol.4
, pp. 159-170
-
-
Schauer, R.1
Bienhold, C.2
Ramette, A.3
Harder, J.4
-
69
-
-
0141518151
-
-
SeaDataNet, Pan-European Infrastructure for Ocean & Marine Data Management, IFREMER/SISMER, Plouzane, France
-
Schlitzer, R. 2010. Ocean Data View. SeaDataNet, Pan-European Infrastructure for Ocean & Marine Data Management, IFREMER/SISMER, Plouzane, France. http://odv.awi.de.
-
(2010)
Ocean Data View
-
-
Schlitzer, R.1
-
70
-
-
0027337265
-
Isolation of typical marine bacteria by dilution culture: growth, maintenance, and characteristics of isolates under laboratory conditions
-
Schut, F., et al. 1993. Isolation of typical marine bacteria by dilution culture: growth, maintenance, and characteristics of isolates under laboratory conditions. Appl. Environ. Microbiol. 59:2150-2160.
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 2150-2160
-
-
Schut, F.1
-
71
-
-
4444344357
-
Oligotrophic bacterioplankton with a novel single-cell life strategy
-
Simu, K., and Å. Hagström. 2004. Oligotrophic bacterioplankton with a novel single-cell life strategy. Appl. Env. Microbiol. 70:2445-2451.
-
(2004)
Appl. Env. Microbiol.
, vol.70
, pp. 2445-2451
-
-
Simu, K.1
Hagström, Å.2
-
72
-
-
70349493025
-
Surface colonization by marine roseobacters: integrating genotype and phenotype
-
Slightom, R. N., and A. Buchan. 2009. Surface colonization by marine roseobacters: integrating genotype and phenotype. Appl. Environ. Microbiol. 75:6027-6037.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 6027-6037
-
-
Slightom, R.N.1
Buchan, A.2
-
73
-
-
33747073504
-
Microbial diversity in the deep sea and the underexplored "rare biosphere
-
Sogin, M. L., et al. 2006. Microbial diversity in the deep sea and the underexplored "rare biosphere." Proc. Natl. Acad. Sci. U. S. A. 103:12115-12120.
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 12115-12120
-
-
Sogin, M.L.1
-
74
-
-
50249100595
-
A rapid bootstrap algorithm for the RAxML web servers
-
Stamatakis, A., P. Hoover, and J. Rougemont. 2008. A rapid bootstrap algorithm for the RAxML web servers. Syst. Biol. 57:758-771.
-
(2008)
Syst. Biol.
, vol.57
, pp. 758-771
-
-
Stamatakis, A.1
Hoover, P.2
Rougemont, J.3
-
75
-
-
41849142283
-
Bacterial diversity in the oxygen minimum zone of the eastern tropical South Pacific
-
Stevens, H., and O. Ulloa. 2008. Bacterial diversity in the oxygen minimum zone of the eastern tropical South Pacific. Environ. Microbiol. 10:1244-1259.
-
(2008)
Environ. Microbiol.
, vol.10
, pp. 1244-1259
-
-
Stevens, H.1
Ulloa, O.2
-
76
-
-
12244263975
-
Phylogenetic screening of ribosomal RNA genecontaining clones in bacterial artificial chromosome (BAC) libraries from different depths in Monterey Bay
-
Suzuki, M. T., et al. 2004. Phylogenetic screening of ribosomal RNA genecontaining clones in bacterial artificial chromosome (BAC) libraries from different depths in Monterey Bay. Microb. Ecol. 48:473-488.
-
(2004)
Microb. Ecol.
, vol.48
, pp. 473-488
-
-
Suzuki, M.T.1
-
77
-
-
68249111209
-
Isolation and physiological characterization of two novel, piezophilic, thermophilic chemolithoautotrophs from a deep-sea hydrothermal vent chimney
-
Takai, K., et al. 2009. Isolation and physiological characterization of two novel, piezophilic, thermophilic chemolithoautotrophs from a deep-sea hydrothermal vent chimney. Environ. Microbiol. 11:1983-1997.
-
(2009)
Environ. Microbiol.
, vol.11
, pp. 1983-1997
-
-
Takai, K.1
-
78
-
-
49449095879
-
Cell proliferation at 122°C and isotopically heavy CH4 production by a hyperthermophilic methanogen under high-pressure cultivation
-
Takai, K., et al. 2008. Cell proliferation at 122°C and isotopically heavy CH4 production by a hyperthermophilic methanogen under high-pressure cultivation. Proc. Natl. Acad. Sci. U. S. A. 105:10949-10954.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 10949-10954
-
-
Takai, K.1
-
79
-
-
0002504797
-
CYTOPC: processing software for flow cytometric data
-
Vaulot, D. 1989. CYTOPC: processing software for flow cytometric data. Signal Noise 2:8.
-
(1989)
Signal Noise
, vol.2
, pp. 8
-
-
Vaulot, D.1
-
80
-
-
20044393188
-
Life at depth: Photobacterium profundum genome sequence and expression analysis
-
Vezzi, A., et al. 2005. Life at depth: Photobacterium profundum genome sequence and expression analysis. Science 307:1459-1461.
-
(2005)
Science
, vol.307
, pp. 1459-1461
-
-
Vezzi, A.1
-
81
-
-
70350502063
-
Metagenome of a versatile chemolithoautotroph from expanding oceanic dead zones
-
Walsh, D. A., et al. 2009. Metagenome of a versatile chemolithoautotroph from expanding oceanic dead zones. Science 326:578-582.
-
(2009)
Science
, vol.326
, pp. 578-582
-
-
Walsh, D.A.1
-
82
-
-
44849097921
-
Environmental adaptation: genomic analysis of the piezotolerant and psychrotolerant deep-sea iron reducing bacterium Shewanella piezotolerans WP3
-
Wang, F. P., et al. 2008. Environmental adaptation: genomic analysis of the piezotolerant and psychrotolerant deep-sea iron reducing bacterium Shewanella piezotolerans WP3. PLoS One 3:e1937.
-
(2008)
PLoS One
, vol.3
-
-
Wang, F.P.1
-
83
-
-
38549100034
-
Major differences of bacterial diversity and activity inside and outside of a natural iron-fertilized phytoplankton bloom in the Southern Ocean
-
West, N. J., I. Obernosterer, O. Zemb, and P. Lebaron. 2008. Major differences of bacterial diversity and activity inside and outside of a natural iron-fertilized phytoplankton bloom in the Southern Ocean. Environ. Microbiol. 10:738-756.
-
(2008)
Environ. Microbiol.
, vol.10
, pp. 738-756
-
-
West, N.J.1
Obernosterer, I.2
Zemb, O.3
Lebaron, P.4
-
84
-
-
0001614970
-
Gram-negative mesophilic sulfate-reducing bacteria
-
A. Ballows, H. G. Trüper, M. Dworkin, W. Harder, and K.-H. Schleifer (ed.), 2nd ed. Springer Verlag, New York, NY
-
Widdel, F., and F. Bak. 1992. Gram-negative mesophilic sulfate-reducing bacteria, p. 3352-3378. In A. Ballows, H. G. Trüper, M. Dworkin, W. Harder, and K.-H. Schleifer (ed.), The prokaryotes. A handbook on the biology of Bacteria: ecophysiology, isolation, identification, application, 2nd ed. Springer Verlag, New York, NY.
-
(1992)
The prokaryotes. A handbook on the biology of Bacteria: ecophysiology, isolation, identification, application
, pp. 3352-3378
-
-
Widdel, F.1
Bak, F.2
-
85
-
-
0023274869
-
Membrane lipids of a psychrophilic and barophilic deep-sea bacterium
-
Wirsen, C. O., H. W. Jannasch, S. G. Wakeham, and E. A. Canuel. 1986. Membrane lipids of a psychrophilic and barophilic deep-sea bacterium. Curr. Microbiol. 14:319-322.
-
(1986)
Curr. Microbiol.
, vol.14
, pp. 319-322
-
-
Wirsen, C.O.1
Jannasch, H.W.2
Wakeham, S.G.3
Canuel, E.A.4
-
86
-
-
0037360652
-
Moritella profunda sp. nov. and Moritella abyssi sp. nov., two psychropiezophilic organisms isolated from deep Atlantic sediments
-
Xu, Y., et al. 2003. Moritella profunda sp. nov. and Moritella abyssi sp. nov., two psychropiezophilic organisms isolated from deep Atlantic sediments. Int. J. Syst. Evol. Microbiol. 53:533-538.
-
(2003)
Int. J. Syst. Evol. Microbiol.
, vol.53
, pp. 533-538
-
-
Xu, Y.1
-
87
-
-
0037357788
-
Psychromonas profunda sp. nov., a psychropiezophilic bacterium from deep Atlantic sediments
-
Xu, Y., et al. 2003. Psychromonas profunda sp. nov., a psychropiezophilic bacterium from deep Atlantic sediments. Int. J. Syst. Evol. Microbiol. 53: 527-532.
-
(2003)
Int. J. Syst. Evol. Microbiol.
, vol.53
, pp. 527-532
-
-
Xu, Y.1
-
88
-
-
0000305648
-
Evolutional and ecological implications of the properties of deep-sea barophilic bacteria
-
Yayanos, A. A. 1986. Evolutional and ecological implications of the properties of deep-sea barophilic bacteria. Proc. Natl. Acad. Sci. U. S. A. 83:9542-9546.
-
(1986)
Proc. Natl. Acad. Sci. U. S. A.
, vol.83
, pp. 9542-9546
-
-
Yayanos, A.A.1
-
89
-
-
0028829187
-
Microbiology to 10,500 meters in the deep sea
-
Yayanos, A. A. 1995. Microbiology to 10,500 meters in the deep sea. Annu. Rev. Mirobiol. 49:777-805.
-
(1995)
Annu. Rev. Mirobiol.
, vol.49
, pp. 777-805
-
-
Yayanos, A.A.1
-
91
-
-
0018677154
-
Isolation of a deep-sea barophilic bacterium and some of its growth characteristics
-
Yayanos, A. A., A. S. Dietz, and R. Vanboxtel. 1979. Isolation of a deep-sea barophilic bacterium and some of its growth characteristics. Science 205: 808-810.
-
(1979)
Science
, vol.205
, pp. 808-810
-
-
Yayanos, A.A.1
Dietz, A.S.2
Vanboxtel, R.3
-
92
-
-
0011058491
-
Coupling device for quick high pressure connections to 100 MPa
-
Yayanos, A. A., and R. Van Boxtel. 1982. Coupling device for quick high pressure connections to 100 MPa. Rev. Sci. Instrum. 53:704-705.
-
(1982)
Rev. Sci. Instrum.
, vol.53
, pp. 704-705
-
-
Yayanos, A.A.1
Van Boxtel, R.2
-
93
-
-
67949103703
-
Pyrococcus CH1, an obligate piezophilic hyperthermophile: extending the upper pressure-temperature limits for life
-
Zeng, X., et al. 2009. Pyrococcus CH1, an obligate piezophilic hyperthermophile: extending the upper pressure-temperature limits for life. ISME J. 3:873-876.
-
(2009)
ISME J
, vol.3
, pp. 873-876
-
-
Zeng, X.1
-
94
-
-
60749134109
-
Gene transfer agent (GTA) genes reveal diverse and dynamic Roseobacter and Rhodobacter populations in the Chesapeake Bay
-
Zhao, Y., et al. 2009. Gene transfer agent (GTA) genes reveal diverse and dynamic Roseobacter and Rhodobacter populations in the Chesapeake Bay. ISME J. 3:364-373.
-
(2009)
ISME J
, vol.3
, pp. 364-373
-
-
Zhao, Y.1
|