메뉴 건너뛰기




Volumn 77, Issue 22, 2011, Pages 8145-8153

Isolation and characterization of a psychropiezophilic alphaproteobacterium

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL LINEAGES; CAPSID PROTEINS; CELL SIZE; DEEP OCEAN; FUNCTIONAL ATTRIBUTE; GEOGRAPHIC DISTRIBUTION; HIGH HYDROSTATIC PRESSURE; HORIZONTAL GENE TRANSFER; ISOLATION AND CHARACTERIZATION; LIMITING CURRENT; LOW TEMPERATURES; MARINE ENVIRONMENT; OPTIMAL GROWTH; PHYSIOLOGICAL TRAIT; POTENTIAL MECHANISM; ROSEOBACTERS; TRANSFER AGENTS;

EID: 83055180099     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.05204-11     Document Type: Article
Times cited : (42)

References (94)
  • 2
    • 0036022481 scopus 로고    scopus 로고
    • Marinitoga piezophila sp. nov., a rod-shaped, thermopiezophilic bacterium isolated under high hydrostatic pressure from a deepsea hydrothermal vent
    • Alain, K., et al. 2002. Marinitoga piezophila sp. nov., a rod-shaped, thermopiezophilic bacterium isolated under high hydrostatic pressure from a deepsea hydrothermal vent. Int. J. Syst. Evol. Microbiol. 52:1331-1339.
    • (2002) Int. J. Syst. Evol. Microbiol. , vol.52 , pp. 1331-1339
    • Alain, K.1
  • 3
    • 0347297272 scopus 로고    scopus 로고
    • Desulfovibrio hydrothermalis sp. nov., a novel sulfatereducing bacterium isolated from hydrothermal vents
    • Alazard, D., et al. 2003. Desulfovibrio hydrothermalis sp. nov., a novel sulfatereducing bacterium isolated from hydrothermal vents. Int. J. Syst. Evol. Microbiol. 53:173-178.
    • (2003) Int. J. Syst. Evol. Microbiol. , vol.53 , pp. 173-178
    • Alazard, D.1
  • 4
    • 0032914127 scopus 로고    scopus 로고
    • Monounsaturated but not polyunsaturated fatty acids are required for growth at high pressure and low temperature in the deep-sea bacterium Photobacterium profundum strain SS9
    • Allen, E. E., D. Facciotti, and D. H. Bartlett. 1999. Monounsaturated but not polyunsaturated fatty acids are required for growth at high pressure and low temperature in the deep-sea bacterium Photobacterium profundum strain SS9. Appl. Environ. Microbiol. 65:1710-1720.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 1710-1720
    • Allen, E.E.1    Facciotti, D.2    Bartlett, D.H.3
  • 5
    • 70349456541 scopus 로고    scopus 로고
    • The genome sequence of the psychrophilic archaeon Methanococcoides burtonii: the role of genome evolution in cold adaptation
    • Allen, M. A., et al. 2009. The genome sequence of the psychrophilic archaeon, Methanococcoides burtonii: the role of genome evolution in cold adaptation. ISME J. 3:1012-1035.
    • (2009) ISME J , vol.3 , pp. 1012-1035
    • Allen, M.A.1
  • 7
    • 0030899619 scopus 로고    scopus 로고
    • Desulfovibrio profundus sp. nov., a novel barophilic sulfate-reducing bacterium from deep sediment layers in the Japan Sea
    • Bale, S. J., et al. 1997. Desulfovibrio profundus sp. nov., a novel barophilic sulfate-reducing bacterium from deep sediment layers in the Japan Sea. Int. J. Syst. Bacteriol. 47:515-521.
    • (1997) Int. J. Syst. Bacteriol. , vol.47 , pp. 515-521
    • Bale, S.J.1
  • 8
    • 39749132596 scopus 로고    scopus 로고
    • Microbial adaptation to high pressure
    • C. Gerday and N. Glandsdorf (ed.), ASM Press, Washington, DC
    • Bartlett, D. H., F. M. Lauro, and E. A. Eloe. 2007. Microbial adaptation to high pressure, p. 333-350. In C. Gerday and N. Glandsdorf (ed.), Physiology and biochemistry of extremophiles. ASM Press, Washington, DC.
    • (2007) Physiology and biochemistry of extremophiles , pp. 333-350
    • Bartlett, D.H.1    Lauro, F.M.2    Eloe, E.A.3
  • 9
    • 0001125889 scopus 로고
    • High pressure enhances the growth rate of the thermophilic archaebacterium Methanococcus thermolithotrophicus without extending its temperature range
    • Bernhardt, G., R. Jaenicke, H. D. Lüdemann, H. König, and K. O. Stetter. 1988. High pressure enhances the growth rate of the thermophilic archaebacterium Methanococcus thermolithotrophicus without extending its temperature range. Appl. Environ. Microbiol. 54:1258-1261.
    • (1988) Appl. Environ. Microbiol. , vol.54 , pp. 1258-1261
    • Bernhardt, G.1    Jaenicke, R.2    Lüdemann, H.D.3    König, H.4    Stetter, K.O.5
  • 10
    • 44249083757 scopus 로고    scopus 로고
    • Occurrence and expression of gene transfer agent (GTA) genes in marine bacterioplankton
    • Biers, E. J., et al. 2008. Occurrence and expression of gene transfer agent (GTA) genes in marine bacterioplankton. Appl. Environ. Microbiol. 74: 2933-2939.
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 2933-2939
    • Biers, E.J.1
  • 11
    • 0021880980 scopus 로고
    • Bacterial biovolume and biomass estimations
    • Bratbak, G. 1985. Bacterial biovolume and biomass estimations. Appl. Environ. Microbiol. 49:1488-1493.
    • (1985) Appl. Environ. Microbiol. , vol.49 , pp. 1488-1493
    • Bratbak, G.1
  • 12
    • 72649088719 scopus 로고    scopus 로고
    • Abundant transposases encoded by the metagenome of a hydrothermal chimney biofilm
    • Brazelton, W. J., and J. A. Baross. 2009. Abundant transposases encoded by the metagenome of a hydrothermal chimney biofilm. ISME J. 3:1420-1424.
    • (2009) ISME J , vol.3 , pp. 1420-1424
    • Brazelton, W.J.1    Baross, J.A.2
  • 13
    • 43949120140 scopus 로고    scopus 로고
    • Diversity, ecology, and genomics of the Roseobacter clade: a short overview
    • Brinkhoff, T., H. A. Giebel, and M. Simon. 2008. Diversity, ecology, and genomics of the Roseobacter clade: a short overview. Arch. Microbiol. 189: 531-539.
    • (2008) Arch. Microbiol. , vol.189 , pp. 531-539
    • Brinkhoff, T.1    Giebel, H.A.2    Simon, M.3
  • 15
    • 0027338910 scopus 로고
    • Viability and isolation of marine bacteria by dilution culture: theory, procedures, and initial results
    • Button, D. K., F. Schut, P. Quang, R. Martin, and B. R. Robertson. 1993. Viability and isolation of marine bacteria by dilution culture: theory, procedures, and initial results. Appl. Environ. Microbiol. 59:881-891.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 881-891
    • Button, D.K.1    Schut, F.2    Quang, P.3    Martin, R.4    Robertson, B.R.5
  • 16
    • 0030989775 scopus 로고    scopus 로고
    • Evolutionary relationships of cultivated psychrophilic and barophilic deep-sea bacteria
    • DeLong, E. F., D. G. Franks, and A. A. Yayanos. 1997. Evolutionary relationships of cultivated psychrophilic and barophilic deep-sea bacteria. Appl. Env. Microbiol. 63:2105-2108.
    • (1997) Appl. Env. Microbiol. , vol.63 , pp. 2105-2108
    • DeLong, E.F.1    Franks, D.G.2    Yayanos, A.A.3
  • 17
    • 31544483932 scopus 로고    scopus 로고
    • Community genomics among stratified microbial assemblages in the ocean's interior
    • DeLong, E. F., et al. 2006. Community genomics among stratified microbial assemblages in the ocean's interior. Science 311:496-503.
    • (2006) Science , vol.311 , pp. 496-503
    • DeLong, E.F.1
  • 19
    • 0018115592 scopus 로고
    • Silica gel media for isolating and studying bacteria under hydrostatic pressure
    • Dietz, A. S., and A. A. Yayanos. 1978. Silica gel media for isolating and studying bacteria under hydrostatic pressure. Appl. Environ. Microbiol. 36: 966-968.
    • (1978) Appl. Environ. Microbiol. , vol.36 , pp. 966-968
    • Dietz, A.S.1    Yayanos, A.A.2
  • 20
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar, R. C. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 21
    • 54949088268 scopus 로고    scopus 로고
    • The deep-sea bacterium Photobacterium profundum SS9 utilizes separate flagellar systems for swimming and swarming under high-pressure conditions
    • Eloe, E. A., F. M. Lauro, R. F. Vogel, and D. H. Bartlett. 2008. The deep-sea bacterium Photobacterium profundum SS9 utilizes separate flagellar systems for swimming and swarming under high-pressure conditions. Appl. Env. Microbiol. 74:6298-6305.
    • (2008) Appl. Env. Microbiol. , vol.74 , pp. 6298-6305
    • Eloe, E.A.1    Lauro, F.M.2    Vogel, R.F.3    Bartlett, D.H.4
  • 22
    • 80051921096 scopus 로고    scopus 로고
    • Compositional differences in particle-associated and free-living microbial assemblages from an extreme deep-ocean environment
    • Eloe, E. A., et al. 2011. Compositional differences in particle-associated and free-living microbial assemblages from an extreme deep-ocean environment. Environ. Microbiol. Rep. 3:449-458.
    • (2011) Environ. Microbiol. Rep. , vol.3 , pp. 449-458
    • Eloe, E.A.1
  • 23
    • 0027445161 scopus 로고
    • Pyrococcus abyssi sp. nov., a new hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent
    • Erauso, G., et al. 1993. Pyrococcus abyssi sp. nov., a new hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent. Arch. Microbiol. 160:338-349.
    • (1993) Arch. Microbiol. , vol.160 , pp. 338-349
    • Erauso, G.1
  • 24
    • 83055166433 scopus 로고    scopus 로고
    • PHYLIP (Phylogeny Inference Package) version 3.6. J. Felsenstein, Department of Genome Sciences, University of Washington, Seattle, WA
    • Felsenstein, J. 2005. PHYLIP (Phylogeny Inference Package) version 3.6. J. Felsenstein, Department of Genome Sciences, University of Washington, Seattle, WA.
    • (2005)
    • Felsenstein, J.1
  • 25
    • 77954294154 scopus 로고    scopus 로고
    • High diversity of Rhodobacterales in the subarctic North Atlantic Ocean and gene transfer agent protein expression in isolated strains
    • Fu, Y., et al. 2010. High diversity of Rhodobacterales in the subarctic North Atlantic Ocean and gene transfer agent protein expression in isolated strains. Aquat. Microb. Ecol. 59:283-293.
    • (2010) Aquat. Microb. Ecol. , vol.59 , pp. 283-293
    • Fu, Y.1
  • 27
    • 65549158266 scopus 로고    scopus 로고
    • New cultivation strategies bring more microbial plankton species into the laboratory
    • Giovannoni, S. J., R. A. Foster, M. S. Rappé, and S. Epstein. 2007. New cultivation strategies bring more microbial plankton species into the laboratory. Oceanography 20:62-69.
    • (2007) Oceanography , vol.20 , pp. 62-69
    • Giovannoni, S.J.1    Foster, R.A.2    Rappé, M.S.3    Epstein, S.4
  • 28
    • 0030826790 scopus 로고    scopus 로고
    • Octadecabacter arcticus gen. nov., sp. nov., and O. antarcticus, sp. nov., nonpigmented, psychrophilic gas vacuolate bacteria from polar sea ice and water
    • Gosink, J. J., R. P. Herwig, and J. T. Staley. 1997. Octadecabacter arcticus gen. nov., sp. nov., and O. antarcticus, sp. nov., nonpigmented, psychrophilic gas vacuolate bacteria from polar sea ice and water. Syst. Appl. Microbiol. 20:356-365.
    • (1997) Syst. Appl. Microbiol. , vol.20 , pp. 356-365
    • Gosink, J.J.1    Herwig, R.P.2    Staley, J.T.3
  • 29
    • 33744923681 scopus 로고    scopus 로고
    • Remarkable heterogeneity in meso- and bathypelagic bacterioplankton assemblage composition
    • Hewson, I., J. A. Steele, D. G. Capone, and J. A. Fuhrman. 2006. Remarkable heterogeneity in meso- and bathypelagic bacterioplankton assemblage composition. Limnol. Oceanogr. 51:1274-1283.
    • (2006) Limnol. Oceanogr. , vol.51 , pp. 1274-1283
    • Hewson, I.1    Steele, J.A.2    Capone, D.G.3    Fuhrman, J.A.4
  • 30
    • 0000741545 scopus 로고
    • Variability of pressure adaptation in deep sea bacteria
    • Jannasch, H. W., and C. O. Wirsen. 1984. Variability of pressure adaptation in deep sea bacteria. Arch. Microbiol. 139:281-288.
    • (1984) Arch. Microbiol. , vol.139 , pp. 281-288
    • Jannasch, H.W.1    Wirsen, C.O.2
  • 31
    • 0021070752 scopus 로고
    • Methanococcus jannaschii sp. nov., an extremely thermophilic methanogen from a submarine hydrothermal vent
    • Jones, W. J., J. A. Leigh, F. Mayer, C. R. Woese, and R. S. Wolfe. 1983. Methanococcus jannaschii sp. nov., an extremely thermophilic methanogen from a submarine hydrothermal vent. Arch. Microbiol. 136:254-261.
    • (1983) Arch. Microbiol. , vol.136 , pp. 254-261
    • Jones, W.J.1    Leigh, J.A.2    Mayer, F.3    Woese, C.R.4    Wolfe, R.S.5
  • 33
    • 78649373804 scopus 로고    scopus 로고
    • Genome sequence of the marine Alphaproteobacterium HTCC2150, assigned to the Roseobacter clade
    • Kang, I., H.-M. Oh, K. L. Vergin, S. J. Giovannoni, and J.-C. Cho. 2010. Genome sequence of the marine Alphaproteobacterium HTCC2150, assigned to the Roseobacter clade. J. Bacteriol. 192:6315-6316.
    • (2010) J. Bacteriol. , vol.192 , pp. 6315-6316
    • Kang, I.1    Oh, H.-M.2    Vergin, K.L.3    Giovannoni, S.J.4    Cho, J.-C.5
  • 34
    • 0031980181 scopus 로고    scopus 로고
    • Extremely barophilic bacteria isolated from the Mariana Trench, Challenger Deep, at a depth of 11, 000 meters
    • Kato, C., et al. 1998. Extremely barophilic bacteria isolated from the Mariana Trench, Challenger Deep, at a depth of 11,000 meters. Appl. Environ. Microbiol. 64:1510-1513.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 1510-1513
    • Kato, C.1
  • 35
    • 0029904521 scopus 로고    scopus 로고
    • Properties of obligately barophilic bacteria isolated from a sample of deep-sea sediment from the Izu-Bonin trench
    • Kato, C., N. Masui, and K. Horikoshi. 1996. Properties of obligately barophilic bacteria isolated from a sample of deep-sea sediment from the Izu-Bonin trench. J. Mar. Biotechnol. 4:96-99.
    • (1996) J. Mar. Biotechnol. , vol.4 , pp. 96-99
    • Kato, C.1    Masui, N.2    Horikoshi, K.3
  • 36
    • 0028976429 scopus 로고
    • Isolation and properties of barophilic and barotolerant bacteria from deep-sea mud samples
    • Kato, C., T. Sato, and K. Horikoshi. 1995. Isolation and properties of barophilic and barotolerant bacteria from deep-sea mud samples. Biodivers. Conserv. 4:1-9.
    • (1995) Biodivers. Conserv. , vol.4 , pp. 1-9
    • Kato, C.1    Sato, T.2    Horikoshi, K.3
  • 37
    • 68549085316 scopus 로고    scopus 로고
    • Comparative metagenomic analysis of a microbial community residing at a depth of 4,000 meters at Station ALOHA in the North Pacific Subtropical Gyre
    • Konstantinidis, K. T., J. Braff, D. M. Karl, and E. F. DeLong. 2009. Comparative metagenomic analysis of a microbial community residing at a depth of 4,000 meters at Station ALOHA in the North Pacific Subtropical Gyre. Appl. Environ. Microbiol. 75:5345-5355.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 5345-5355
    • Konstantinidis, K.T.1    Braff, J.2    Karl, D.M.3    DeLong, E.F.4
  • 38
    • 33846659065 scopus 로고    scopus 로고
    • Importance of widespread gene transfer agent genes in alpha-proteobacteria
    • Lang, A. S., and J. T. Beatty. 2007. Importance of widespread gene transfer agent genes in alpha-proteobacteria. Trends Microbiol. 15:54-62.
    • (2007) Trends Microbiol , vol.15 , pp. 54-62
    • Lang, A.S.1    Beatty, J.T.2
  • 39
    • 38049006515 scopus 로고    scopus 로고
    • Prokaryotic lifestyles in deep sea habitats
    • Lauro, F. M., and D. H. Bartlett. 2008. Prokaryotic lifestyles in deep sea habitats. Extremophiles 12:15-25.
    • (2008) Extremophiles , vol.12 , pp. 15-25
    • Lauro, F.M.1    Bartlett, D.H.2
  • 41
    • 0002671156 scopus 로고
    • Bacteria and cyanobacteria associated with phytodetritus in the deep sea
    • Lochte, K., and C. M. Turley. 1988. Bacteria and cyanobacteria associated with phytodetritus in the deep sea. Nature 333:67-69.
    • (1988) Nature , vol.333 , pp. 67-69
    • Lochte, K.1    Turley, C.M.2
  • 42
    • 0036053784 scopus 로고    scopus 로고
    • Wide bacterial diversity associated with tubes of the vent worm Riftia pachyptila
    • López-García, P., F. Gaill, and D. Moreira. 2002. Wide bacterial diversity associated with tubes of the vent worm Riftia pachyptila. Environ. Microbiol. 4:204-215.
    • (2002) Environ. Microbiol. , vol.4 , pp. 204-215
    • López-García, P.1    Gaill, F.2    Moreira, D.3
  • 43
    • 2542523843 scopus 로고    scopus 로고
    • ARB: a software environment for sequence data
    • Ludwig, W., et al. 2004. ARB: a software environment for sequence data. Nucleic Acids Res. 32:1363-1371.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1363-1371
    • Ludwig, W.1
  • 44
    • 77149170363 scopus 로고    scopus 로고
    • High-resolution imaging of pelagic bacteria by atomic force microscopy and implications for carbon cycling
    • Malfatti, F., T. J. Samo, and F. Azam. 2010. High-resolution imaging of pelagic bacteria by atomic force microscopy and implications for carbon cycling. ISME J. 4:427-439.
    • (2010) ISME J , vol.4 , pp. 427-439
    • Malfatti, F.1    Samo, T.J.2    Azam, F.3
  • 46
    • 0032924862 scopus 로고    scopus 로고
    • Thermococcus barophilus sp. nov., a new barophilic and hyperthermophilic archaeon isolated under high hydrostatic pressure from a deep-sea hydrothermal vent
    • Marteinsson, V. T., et al. 1999. Thermococcus barophilus sp. nov., a new barophilic and hyperthermophilic archaeon isolated under high hydrostatic pressure from a deep-sea hydrothermal vent. Int. J. Syst. Bacteriol. 49:351-359.
    • (1999) Int. J. Syst. Bacteriol. , vol.49 , pp. 351-359
    • Marteinsson, V.T.1
  • 47
    • 39149124249 scopus 로고    scopus 로고
    • Metagenomics of the Deep Mediterranean, a warm bathypelagic habitat
    • Martín-Cuadrado, A. B., et al. 2007. Metagenomics of the Deep Mediterranean, a warm bathypelagic habitat. PLoS One 2:e914.
    • (2007) PLoS One , vol.2
    • Martín-Cuadrado, A.B.1
  • 48
    • 0000519053 scopus 로고
    • Pressure and temperature effects on growth and methane production of the extreme thermophile Methanococcus jannaschii
    • Miller, J. F., N. N. Shah, C. M. Nelson, J. M. Ludlow, and D. S. Clark. 1988. Pressure and temperature effects on growth and methane production of the extreme thermophile Methanococcus jannaschii. Appl. Environ. Microbiol. 54:3039-3042.
    • (1988) Appl. Environ. Microbiol. , vol.54 , pp. 3039-3042
    • Miller, J.F.1    Shah, N.N.2    Nelson, C.M.3    Ludlow, J.M.4    Clark, D.S.5
  • 50
    • 34547150003 scopus 로고    scopus 로고
    • Ecological genomics of marine roseobacters
    • Moran, M. A., et al. 2007. Ecological genomics of marine roseobacters. Appl. Environ. Microbiol. 73:4559-4569.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 4559-4569
    • Moran, M.A.1
  • 51
    • 77954145249 scopus 로고    scopus 로고
    • Emerging concepts on microbial processes in the bathypelagic ocean-ecology, biogeochemistry, and genomics
    • Nagata, T., et al. 2010. Emerging concepts on microbial processes in the bathypelagic ocean-ecology, biogeochemistry, and genomics. Deep Sea Res. Pt. II. 57:1519-1536.
    • (2010) Deep Sea Res. Pt. II. , vol.57 , pp. 1519-1536
    • Nagata, T.1
  • 52
    • 0027945986 scopus 로고
    • New method for isolating barophiles from intestinal contents of deep-sea fishes retrieved from the abyssal zone
    • Nakayama, A., Y. Yano, and K. Yoshida. 1994. New method for isolating barophiles from intestinal contents of deep-sea fishes retrieved from the abyssal zone. Appl. Environ. Microbiol. 60:4210-4212.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 4210-4212
    • Nakayama, A.1    Yano, Y.2    Yoshida, K.3
  • 53
    • 77952674525 scopus 로고    scopus 로고
    • Genome characteristics of a generalist marine bacterial lineage
    • Newton, R. J., et al. 2010. Genome characteristics of a generalist marine bacterial lineage. ISME J. 4:784-798.
    • (2010) ISME J , vol.4 , pp. 784-798
    • Newton, R.J.1
  • 54
    • 5444261180 scopus 로고    scopus 로고
    • Colwellia piezophila sp. nov., a novel piezophilic species from deep-sea sediments of the Japan Trench
    • Nogi, Y., S. Hosoya, C. Kato, and K. Horikoshi. 2004. Colwellia piezophila sp. nov., a novel piezophilic species from deep-sea sediments of the Japan Trench. Int. J. Syst. Evol. Microbiol. 54:1627-1631.
    • (2004) Int. J. Syst. Evol. Microbiol. , vol.54 , pp. 1627-1631
    • Nogi, Y.1    Hosoya, S.2    Kato, C.3    Horikoshi, K.4
  • 55
    • 34250743242 scopus 로고    scopus 로고
    • Psychromonas hadalis sp. nov., a novel piezophilic bacterium isolated from the bottom of the Japan Trench
    • Nogi, Y., S. Hosoya, C. Kato, and K. Horikoshi. 2007. Psychromonas hadalis sp. nov., a novel piezophilic bacterium isolated from the bottom of the Japan Trench. Int. J. Syst. Evol. Microbiol. 57:1360-1364.
    • (2007) Int. J. Syst. Evol. Microbiol. , vol.57 , pp. 1360-1364
    • Nogi, Y.1    Hosoya, S.2    Kato, C.3    Horikoshi, K.4
  • 56
    • 0032982459 scopus 로고    scopus 로고
    • Taxonomic studies of extremely barophilic bacteria isolated from the Mariana Trench and description of Moritella yayanosii sp. nov., a new barophilic bacterial isolate
    • Nogi, Y., and C. Kato. 1999. Taxonomic studies of extremely barophilic bacteria isolated from the Mariana Trench and description of Moritella yayanosii sp. nov., a new barophilic bacterial isolate. Extremophiles 3:71-77.
    • (1999) Extremophiles , vol.3 , pp. 71-77
    • Nogi, Y.1    Kato, C.2
  • 57
    • 0036740457 scopus 로고    scopus 로고
    • Psychromonas kaikoae sp. nov., a novel piezophilic bacterium from the deepest cold-seep sediments in the Japan Trench
    • Nogi, Y., C. Kato, and K. Horikoshi. 2002. Psychromonas kaikoae sp. nov., a novel piezophilic bacterium from the deepest cold-seep sediments in the Japan Trench. Int. J. Syst. Evol. Microbiol. 52:1527-1532.
    • (2002) Int. J. Syst. Evol. Microbiol. , vol.52 , pp. 1527-1532
    • Nogi, Y.1    Kato, C.2    Horikoshi, K.3
  • 58
    • 0031671525 scopus 로고    scopus 로고
    • Photobacterium profundum sp. nov., a new moderately barophilic bacterial species isolated from a deep-sea sediment
    • Nogi, Y., N. Masui, and C. Kato. 1998. Photobacterium profundum sp. nov., a new moderately barophilic bacterial species isolated from a deep-sea sediment. Extremophiles 2:1-7.
    • (1998) Extremophiles , vol.2 , pp. 1-7
    • Nogi, Y.1    Masui, N.2    Kato, C.3
  • 59
    • 34247535716 scopus 로고    scopus 로고
    • Virus and prokaryote enumeration from planktonic aquatic environments by epifluorescence microscopy with SYBR Green I
    • Patel, A., et al. 2007. Virus and prokaryote enumeration from planktonic aquatic environments by epifluorescence microscopy with SYBR Green I. Nat. Protoc. 2:269-276.
    • (2007) Nat. Protoc. , vol.2 , pp. 269-276
    • Patel, A.1
  • 60
    • 33745324987 scopus 로고    scopus 로고
    • Dermacoccus abyssi sp. nov., a piezotolerant actinomycete isolated from the Mariana Trench
    • Pathom-aree, W., et al. 2006. Dermacoccus abyssi sp. nov., a piezotolerant actinomycete isolated from the Mariana Trench. Int. J. Syst. Evol. Microbiol. 56:1233-1237.
    • (2006) Int. J. Syst. Evol. Microbiol. , vol.56 , pp. 1233-1237
    • Pathom-aree, W.1
  • 61
    • 33750014260 scopus 로고    scopus 로고
    • Dermacoccus barathri sp. nov. and Dermacoccus profundi sp. nov., novel actinomycetes isolated from deep-sea mud of the Mariana Trench
    • Pathom-aree, W., et al. 2006. Dermacoccus barathri sp. nov. and Dermacoccus profundi sp. nov., novel actinomycetes isolated from deep-sea mud of the Mariana Trench. Int. J. Syst. Evol. Microbiol. 56:2303-2307.
    • (2006) Int. J. Syst. Evol. Microbiol. , vol.56 , pp. 2303-2307
    • Pathom-aree, W.1
  • 62
    • 33144484401 scopus 로고    scopus 로고
    • Characterization of bacterial communities associated with deep-sea corals on Gulf of Alaska seamounts
    • Penn, K., D. Wu, J. A. Eisen, and N. Ward. 2006. Characterization of bacterial communities associated with deep-sea corals on Gulf of Alaska seamounts. Appl. Environ. Microbiol. 72:1680-1683.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 1680-1683
    • Penn, K.1    Wu, D.2    Eisen, J.A.3    Ward, N.4
  • 63
    • 48749116908 scopus 로고    scopus 로고
    • Phylogenetic analyses of ribosomal DNA-containing bacterioplankton genome fragments from a 4,000 m vertical profile in the North Pacific Subtropical Gyre
    • Pham, V. D., K. T. Konstantinidis, T. Palden, and E. F. DeLong. 2008. Phylogenetic analyses of ribosomal DNA-containing bacterioplankton genome fragments from a 4,000 m vertical profile in the North Pacific Subtropical Gyre. Environ. Microbiol. 10:2313-2330.
    • (2008) Environ. Microbiol. , vol.10 , pp. 2313-2330
    • Pham, V.D.1    Konstantinidis, K.T.2    Palden, T.3    DeLong, E.F.4
  • 64
    • 37549027613 scopus 로고    scopus 로고
    • SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
    • Pruesse, E., et al. 2007. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res. 35:7188-7196.
    • (2007) Nucleic Acids Res , vol.35 , pp. 7188-7196
    • Pruesse, E.1
  • 65
    • 0037043731 scopus 로고    scopus 로고
    • Cultivation of the ubiquitous SAR11 marine bacterioplankton clade
    • Rappé, M. S., S. A. Connon, K. L. Vergin, and S. J. Giovannoni. 2002. Cultivation of the ubiquitous SAR11 marine bacterioplankton clade. Nature 418:630-633.
    • (2002) Nature , vol.418 , pp. 630-633
    • Rappé, M.S.1    Connon, S.A.2    Vergin, K.L.3    Giovannoni, S.J.4
  • 66
    • 0041935939 scopus 로고    scopus 로고
    • National Institutes of Health, Bethesda, MD
    • Rasband, W. S. 2009. ImageJ. National Institutes of Health, Bethesda, MD. http://rsb.info.nih.gov/ij/.
    • (2009) ImageJ
    • Rasband, W.S.1
  • 67
    • 33947238287 scopus 로고    scopus 로고
    • The Sorcerer II global ocean sampling expedition: Northwest Atlantic through Eastern Tropical Pacific
    • Rusch, D. B., et al. 2007. The Sorcerer II global ocean sampling expedition: Northwest Atlantic through Eastern Tropical Pacific. PLoS Biol. 5:398-431.
    • (2007) PLoS Biol , vol.5 , pp. 398-431
    • Rusch, D.B.1
  • 68
    • 76349123164 scopus 로고    scopus 로고
    • Bacterial diversity and biogeography in deep-sea surface sediments of the South Atlantic Ocean
    • Schauer, R., C. Bienhold, A. Ramette, and J. Harder. 2010. Bacterial diversity and biogeography in deep-sea surface sediments of the South Atlantic Ocean. ISME J. 4:159-170.
    • (2010) ISME J , vol.4 , pp. 159-170
    • Schauer, R.1    Bienhold, C.2    Ramette, A.3    Harder, J.4
  • 69
    • 0141518151 scopus 로고    scopus 로고
    • SeaDataNet, Pan-European Infrastructure for Ocean & Marine Data Management, IFREMER/SISMER, Plouzane, France
    • Schlitzer, R. 2010. Ocean Data View. SeaDataNet, Pan-European Infrastructure for Ocean & Marine Data Management, IFREMER/SISMER, Plouzane, France. http://odv.awi.de.
    • (2010) Ocean Data View
    • Schlitzer, R.1
  • 70
    • 0027337265 scopus 로고
    • Isolation of typical marine bacteria by dilution culture: growth, maintenance, and characteristics of isolates under laboratory conditions
    • Schut, F., et al. 1993. Isolation of typical marine bacteria by dilution culture: growth, maintenance, and characteristics of isolates under laboratory conditions. Appl. Environ. Microbiol. 59:2150-2160.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 2150-2160
    • Schut, F.1
  • 71
    • 4444344357 scopus 로고    scopus 로고
    • Oligotrophic bacterioplankton with a novel single-cell life strategy
    • Simu, K., and Å. Hagström. 2004. Oligotrophic bacterioplankton with a novel single-cell life strategy. Appl. Env. Microbiol. 70:2445-2451.
    • (2004) Appl. Env. Microbiol. , vol.70 , pp. 2445-2451
    • Simu, K.1    Hagström, Å.2
  • 72
    • 70349493025 scopus 로고    scopus 로고
    • Surface colonization by marine roseobacters: integrating genotype and phenotype
    • Slightom, R. N., and A. Buchan. 2009. Surface colonization by marine roseobacters: integrating genotype and phenotype. Appl. Environ. Microbiol. 75:6027-6037.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 6027-6037
    • Slightom, R.N.1    Buchan, A.2
  • 73
    • 33747073504 scopus 로고    scopus 로고
    • Microbial diversity in the deep sea and the underexplored "rare biosphere
    • Sogin, M. L., et al. 2006. Microbial diversity in the deep sea and the underexplored "rare biosphere." Proc. Natl. Acad. Sci. U. S. A. 103:12115-12120.
    • (2006) Proc. Natl. Acad. Sci. U. S. A. , vol.103 , pp. 12115-12120
    • Sogin, M.L.1
  • 74
    • 50249100595 scopus 로고    scopus 로고
    • A rapid bootstrap algorithm for the RAxML web servers
    • Stamatakis, A., P. Hoover, and J. Rougemont. 2008. A rapid bootstrap algorithm for the RAxML web servers. Syst. Biol. 57:758-771.
    • (2008) Syst. Biol. , vol.57 , pp. 758-771
    • Stamatakis, A.1    Hoover, P.2    Rougemont, J.3
  • 75
    • 41849142283 scopus 로고    scopus 로고
    • Bacterial diversity in the oxygen minimum zone of the eastern tropical South Pacific
    • Stevens, H., and O. Ulloa. 2008. Bacterial diversity in the oxygen minimum zone of the eastern tropical South Pacific. Environ. Microbiol. 10:1244-1259.
    • (2008) Environ. Microbiol. , vol.10 , pp. 1244-1259
    • Stevens, H.1    Ulloa, O.2
  • 76
    • 12244263975 scopus 로고    scopus 로고
    • Phylogenetic screening of ribosomal RNA genecontaining clones in bacterial artificial chromosome (BAC) libraries from different depths in Monterey Bay
    • Suzuki, M. T., et al. 2004. Phylogenetic screening of ribosomal RNA genecontaining clones in bacterial artificial chromosome (BAC) libraries from different depths in Monterey Bay. Microb. Ecol. 48:473-488.
    • (2004) Microb. Ecol. , vol.48 , pp. 473-488
    • Suzuki, M.T.1
  • 77
    • 68249111209 scopus 로고    scopus 로고
    • Isolation and physiological characterization of two novel, piezophilic, thermophilic chemolithoautotrophs from a deep-sea hydrothermal vent chimney
    • Takai, K., et al. 2009. Isolation and physiological characterization of two novel, piezophilic, thermophilic chemolithoautotrophs from a deep-sea hydrothermal vent chimney. Environ. Microbiol. 11:1983-1997.
    • (2009) Environ. Microbiol. , vol.11 , pp. 1983-1997
    • Takai, K.1
  • 78
    • 49449095879 scopus 로고    scopus 로고
    • Cell proliferation at 122°C and isotopically heavy CH4 production by a hyperthermophilic methanogen under high-pressure cultivation
    • Takai, K., et al. 2008. Cell proliferation at 122°C and isotopically heavy CH4 production by a hyperthermophilic methanogen under high-pressure cultivation. Proc. Natl. Acad. Sci. U. S. A. 105:10949-10954.
    • (2008) Proc. Natl. Acad. Sci. U. S. A. , vol.105 , pp. 10949-10954
    • Takai, K.1
  • 79
    • 0002504797 scopus 로고
    • CYTOPC: processing software for flow cytometric data
    • Vaulot, D. 1989. CYTOPC: processing software for flow cytometric data. Signal Noise 2:8.
    • (1989) Signal Noise , vol.2 , pp. 8
    • Vaulot, D.1
  • 80
    • 20044393188 scopus 로고    scopus 로고
    • Life at depth: Photobacterium profundum genome sequence and expression analysis
    • Vezzi, A., et al. 2005. Life at depth: Photobacterium profundum genome sequence and expression analysis. Science 307:1459-1461.
    • (2005) Science , vol.307 , pp. 1459-1461
    • Vezzi, A.1
  • 81
    • 70350502063 scopus 로고    scopus 로고
    • Metagenome of a versatile chemolithoautotroph from expanding oceanic dead zones
    • Walsh, D. A., et al. 2009. Metagenome of a versatile chemolithoautotroph from expanding oceanic dead zones. Science 326:578-582.
    • (2009) Science , vol.326 , pp. 578-582
    • Walsh, D.A.1
  • 82
    • 44849097921 scopus 로고    scopus 로고
    • Environmental adaptation: genomic analysis of the piezotolerant and psychrotolerant deep-sea iron reducing bacterium Shewanella piezotolerans WP3
    • Wang, F. P., et al. 2008. Environmental adaptation: genomic analysis of the piezotolerant and psychrotolerant deep-sea iron reducing bacterium Shewanella piezotolerans WP3. PLoS One 3:e1937.
    • (2008) PLoS One , vol.3
    • Wang, F.P.1
  • 83
    • 38549100034 scopus 로고    scopus 로고
    • Major differences of bacterial diversity and activity inside and outside of a natural iron-fertilized phytoplankton bloom in the Southern Ocean
    • West, N. J., I. Obernosterer, O. Zemb, and P. Lebaron. 2008. Major differences of bacterial diversity and activity inside and outside of a natural iron-fertilized phytoplankton bloom in the Southern Ocean. Environ. Microbiol. 10:738-756.
    • (2008) Environ. Microbiol. , vol.10 , pp. 738-756
    • West, N.J.1    Obernosterer, I.2    Zemb, O.3    Lebaron, P.4
  • 84
    • 0001614970 scopus 로고
    • Gram-negative mesophilic sulfate-reducing bacteria
    • A. Ballows, H. G. Trüper, M. Dworkin, W. Harder, and K.-H. Schleifer (ed.), 2nd ed. Springer Verlag, New York, NY
    • Widdel, F., and F. Bak. 1992. Gram-negative mesophilic sulfate-reducing bacteria, p. 3352-3378. In A. Ballows, H. G. Trüper, M. Dworkin, W. Harder, and K.-H. Schleifer (ed.), The prokaryotes. A handbook on the biology of Bacteria: ecophysiology, isolation, identification, application, 2nd ed. Springer Verlag, New York, NY.
    • (1992) The prokaryotes. A handbook on the biology of Bacteria: ecophysiology, isolation, identification, application , pp. 3352-3378
    • Widdel, F.1    Bak, F.2
  • 85
    • 0023274869 scopus 로고
    • Membrane lipids of a psychrophilic and barophilic deep-sea bacterium
    • Wirsen, C. O., H. W. Jannasch, S. G. Wakeham, and E. A. Canuel. 1986. Membrane lipids of a psychrophilic and barophilic deep-sea bacterium. Curr. Microbiol. 14:319-322.
    • (1986) Curr. Microbiol. , vol.14 , pp. 319-322
    • Wirsen, C.O.1    Jannasch, H.W.2    Wakeham, S.G.3    Canuel, E.A.4
  • 86
    • 0037360652 scopus 로고    scopus 로고
    • Moritella profunda sp. nov. and Moritella abyssi sp. nov., two psychropiezophilic organisms isolated from deep Atlantic sediments
    • Xu, Y., et al. 2003. Moritella profunda sp. nov. and Moritella abyssi sp. nov., two psychropiezophilic organisms isolated from deep Atlantic sediments. Int. J. Syst. Evol. Microbiol. 53:533-538.
    • (2003) Int. J. Syst. Evol. Microbiol. , vol.53 , pp. 533-538
    • Xu, Y.1
  • 87
    • 0037357788 scopus 로고    scopus 로고
    • Psychromonas profunda sp. nov., a psychropiezophilic bacterium from deep Atlantic sediments
    • Xu, Y., et al. 2003. Psychromonas profunda sp. nov., a psychropiezophilic bacterium from deep Atlantic sediments. Int. J. Syst. Evol. Microbiol. 53: 527-532.
    • (2003) Int. J. Syst. Evol. Microbiol. , vol.53 , pp. 527-532
    • Xu, Y.1
  • 88
    • 0000305648 scopus 로고
    • Evolutional and ecological implications of the properties of deep-sea barophilic bacteria
    • Yayanos, A. A. 1986. Evolutional and ecological implications of the properties of deep-sea barophilic bacteria. Proc. Natl. Acad. Sci. U. S. A. 83:9542-9546.
    • (1986) Proc. Natl. Acad. Sci. U. S. A. , vol.83 , pp. 9542-9546
    • Yayanos, A.A.1
  • 89
    • 0028829187 scopus 로고
    • Microbiology to 10,500 meters in the deep sea
    • Yayanos, A. A. 1995. Microbiology to 10,500 meters in the deep sea. Annu. Rev. Mirobiol. 49:777-805.
    • (1995) Annu. Rev. Mirobiol. , vol.49 , pp. 777-805
    • Yayanos, A.A.1
  • 91
    • 0018677154 scopus 로고
    • Isolation of a deep-sea barophilic bacterium and some of its growth characteristics
    • Yayanos, A. A., A. S. Dietz, and R. Vanboxtel. 1979. Isolation of a deep-sea barophilic bacterium and some of its growth characteristics. Science 205: 808-810.
    • (1979) Science , vol.205 , pp. 808-810
    • Yayanos, A.A.1    Dietz, A.S.2    Vanboxtel, R.3
  • 92
    • 0011058491 scopus 로고
    • Coupling device for quick high pressure connections to 100 MPa
    • Yayanos, A. A., and R. Van Boxtel. 1982. Coupling device for quick high pressure connections to 100 MPa. Rev. Sci. Instrum. 53:704-705.
    • (1982) Rev. Sci. Instrum. , vol.53 , pp. 704-705
    • Yayanos, A.A.1    Van Boxtel, R.2
  • 93
    • 67949103703 scopus 로고    scopus 로고
    • Pyrococcus CH1, an obligate piezophilic hyperthermophile: extending the upper pressure-temperature limits for life
    • Zeng, X., et al. 2009. Pyrococcus CH1, an obligate piezophilic hyperthermophile: extending the upper pressure-temperature limits for life. ISME J. 3:873-876.
    • (2009) ISME J , vol.3 , pp. 873-876
    • Zeng, X.1
  • 94
    • 60749134109 scopus 로고    scopus 로고
    • Gene transfer agent (GTA) genes reveal diverse and dynamic Roseobacter and Rhodobacter populations in the Chesapeake Bay
    • Zhao, Y., et al. 2009. Gene transfer agent (GTA) genes reveal diverse and dynamic Roseobacter and Rhodobacter populations in the Chesapeake Bay. ISME J. 3:364-373.
    • (2009) ISME J , vol.3 , pp. 364-373
    • Zhao, Y.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.