Psychromonas hadalis sp. nov., a novel piezophilic bacterium isolated from the bottom of the Japan Trench

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 6, 2007, Pages 1360-1364

  Nogi, Yuichi ^a   Hosoya, Shoichi ^a,b   Kato, Chiaki ^a   Horikoshi, Koki ^a  

^a JAPAN AGENCY FOR MARINE EARTH SCIENCE AND TECHNOLOGY   (Japan)

^b UNIVERSITY OF TOKYO   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

FATTY ACID; RNA 16S;

ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; CONTROLLED STUDY; DEEP SEA; DNA DNA HYBRIDIZATION; FATTY ACID ANALYSIS; GAMMAPROTEOBACTERIA; GENE SEQUENCE; JAPAN; MARINE BACTERIUM; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENETIC TREE; PRIORITY JOURNAL; PSYCHROMONAS HADALIS; SEQUENCE ANALYSIS; TAXONOMIC RANK; TEMPERATURE DEPENDENCE;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GAMMAPROTEOBACTERIA; GENES, RRNA; GEOLOGIC SEDIMENTS; HYDROSTATIC PRESSURE; JAPAN; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEAWATER; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; TEMPERATURE;

BACTERIA (MICROORGANISMS); PSYCHROMONAS;

EID: 34250743242     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64933-0     Document Type: Article

References (23)

1. Auman, A. J., Breezee, J. L., Gosink, J. J., Kämpfer, P. & Staley, J. T. (2006). Psychromonas ingrahamii sp. nov., a novel gas vacuolate, psychrophilic: Bacterium isolated from Arctic polar sea ice. Int J Syst Evol Microbiol 56, 1001-1007.
2. DeLong, E. F., Franks, D. G. & Yayanos, A. A. (1997). Evolutionary relationships of cultivated psychrophilic and barophilic: Deep-sea bacteria. Appl Environ Microbiol 63, 2105-2108.
3. Ezaki, T., Hashimoto, Y. & Yabuuchi, F. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
4. Groudieva, T., Grote, R. & Antranikian, G. (2003). Psychromonas arctica sp. nov., a novel psychrotolerant, biofilm-forming bacterium isolated from Spitzbergen. Int J Syst Evol Microbiol 53, 539-545.
5. Kato, C., Sato, T., Smorawinska, M. & Horikoshi K. (1994). High pressure conditions stimulate expression of chloramphenicol acetyltransferase regulated by the lac promoter in Escherichia coli. FEMS Microbiol Lett 122, 91-96.
6. Kato, Q., Sato, T. & Horikoshi, K. (1995). Isolation and properties of barophilic and barotolerant bacteria from deep-sea mud samples. Biodivers Conserv 4, 1-9.
7. Kato, C., Li L., Nogi, Y., Nakamura, Y., Tamaoke, J. & Horikoshi, K. (1998). Extremely barophilic bacteria isolated from the Mariana Trench, Challenger Deep, at a depth of 11,000 meters. Appl Environ Microbiol 64, 1510-1513.
8. Kawasaki, K., Nogi, Y., Hishinuma, M., Nodasaka, Y., Matsuyama, H. & Yumoto, I. (2002). Psychromonas marina sp. nov., a novel halophilic, facultatively psychrophilic bacterium isolated from the coast of the Okhotsk Sea. Int J Syst Evol Microbiol 52, 1455-1459.
9. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
10. Margesin, R. & Nogi, Y. (2004). Psychropiezophilic microorganisms. Cell Mol Biol 50, 429-436.
11. Mountfort, D. O., Rainey, F. A., Burghardt, J., Kasper, F. & Stackebrandt, E. (1998). Psychromonas antarcticus gen. nov., sp. nov., a new aerotolerant anaerobic, halophilic psychrophile isolated from pond sediment of the McMurdo Ice Shelf, Antarctica. Arch Microbiol 169, 231-238.
12. Nogi, Y. & Kato, C. (1999). Taxonomic studies of extremely barophilic bacteria isolated from the Mariana Trench and description of Moritella yayanosii sp. nov., a new barophilic bacterial isolate. Extremophiles 3, 71-77.
13. Nogi, Y., Kato, C. & Horikoshi, K. (1998). Taxonomic studies of deep-sea barophilic Shewanella strains and description of Shewanella violacea sp. nov. Arch Microbiol 170, 331-338.
14. Nogi, Y., Kato, C. & Horikoshi, K. (2002). Psychromonas kaikoae sp. nov., a novel piezophilic bacterium from the deepest cold-seep sediments in the Japan Trench. Int J Syst Evol Microbiol 52, 1527-1532.
15. Nogi, Y., Hosoya, S., Kato, C. & Horikoshi, K. (2004). Colwellia piezophila sp. nov., a novel piezophilic species from deep-sea sediments of the Japan Trench. Int J Syst Evol Microbiol 54, 1627-1631.
16. Saitou, N. & Nei, M. (1987). The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4 406-425.
17. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
18. Stackebrandt E., Frederiksen, W., Garrity, G. M., Grimont, P. A. D., Kämpfer, P., Maiden, M. C. J., Nesme, X. Rosselló-Mora, R., Swings, J. & other authors (2002). Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. Int J Syst Evol Microbiol 52, 1043-1047.
19. Thompson, J. D., Gibson, T. J., Plewniak F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X Windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
20. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987), International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
21. Xu, Y., Nogi, Y., Kato, C., Liang, Z., Rüger, H.-J., Kegel, D. D. & Glansdorff, N. (2003). Psychromonas profunda sp. nov., a psychropiezophilic bacterium from deep Atlantic sediments. Int J Syst Evol Microbiol 53, 527-532.
22. Yanagibayashi, M., Nogi, Y., Li, L. & Kato, C. (1999). Changes in the microbial community in Japan Trench sediment from a depth of 6,292 m during cultivation without decompression. FEMS Microbiol Lett 170, 271-279.
23. Yayanos, A. A., Dietz, A. S. & Van Boxtel, R. (1979). Isolation of a deep-sea barophilic bacterium and some of its growth characteristics. Science 205, 808-810.