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Volumn 30, Issue 6, 2011, Pages 1121-1142

Mass spectrometry of G-quadruplex DNA: Formation, recognition, property, conversion, and conformation

Author keywords

Conversion; Formation; G quadruplex DNA; Mass spectrometry; Recognition

Indexed keywords

ANALYTICAL TOOL; BINDING AFFINITIES; DRUG DEVELOPMENT; DUPLEX DNA; ELECTROSPRAY IONIZATION MASS SPECTROMETRY; FORMATION; G-QUADRUPLEX STRUCTURE; G-QUADRUPLEXES; G-RICH SEQUENCES; GENE TRANSCRIPTIONS; HIGHLY SENSITIVE; PROBE INTERACTION; RECOGNITION; SECONDARY STRUCTURES; SMALL MOLECULES; TECHNICAL DEVELOPMENT;

EID: 82955235518     PISSN: 02777037     EISSN: 10982787     Source Type: Journal    
DOI: 10.1002/mas.20315     Document Type: Article
Times cited : (82)

References (114)
  • 1
    • 0041404874 scopus 로고    scopus 로고
    • Clustering of nucleosides in the presence of alkali metals: Biologically relevant quartets of guanosine, deoxyguanosine and uridine observed by ESIMS/ MS
    • Aggerholm T, Nanita SC, Koch KJ, Cooks RG. 2003. Clustering of nucleosides in the presence of alkali metals: Biologically relevant quartets of guanosine, deoxyguanosine and uridine observed by ESIMS/ MS. J Mass Spectrom 38:87-97.
    • (2003) J Mass Spectrom , vol.38 , pp. 87-97
    • Aggerholm, T.1    Nanita, S.C.2    Koch, K.J.3    Cooks, R.G.4
  • 3
    • 65249090347 scopus 로고    scopus 로고
    • Hybridization of short complementary PNAs to G-quadruplex forming oligonucleotides: An electrospray mass spectrometry study
    • Amato J, Oliviero G, De Pauw E, Gabelica V. 2009. Hybridization of short complementary PNAs to G-quadruplex forming oligonucleotides: An electrospray mass spectrometry study. Biopolymers 91:244-255.
    • (2009) Biopolymers , vol.91 , pp. 244-255
    • Amato, J.1    Oliviero, G.2    De Pauw, E.3    Gabelica, V.4
  • 5
    • 59449107619 scopus 로고    scopus 로고
    • Ligand binding to tandemG quadruplexes from human telomeric DNA
    • Bai LP, HagiharaM, Jiang ZH, Nakatani K. 2008. Ligand binding to tandemG quadruplexes from human telomeric DNA. ChemBioChem 9:2583-2587.
    • (2008) ChemBioChem , vol.9 , pp. 2583-2587
    • Bai, L.P.1    Hagihara, M.2    Jiang, Z.H.3    Nakatani, K.4
  • 6
    • 20444485612 scopus 로고    scopus 로고
    • Structural characterization of Gquadruplexes in deoxyguanosine clusters using ion mobility mass spectrometry
    • Baker ES, Bernstein SL, Bowers MT. 2005. Structural characterization of Gquadruplexes in deoxyguanosine clusters using ion mobility mass spectrometry. J Am Soc Mass Spectrom 16:989-997.
    • (2005) J Am Soc Mass Spectrom , vol.16 , pp. 989-997
    • Baker, E.S.1    Bernstein, S.L.2    Bowers, M.T.3
  • 8
    • 35748937058 scopus 로고    scopus 로고
    • Quartets in G-major: The first international meeting on quadruplex DNA
    • Bates P, Mergny JL, Yang D. 2007. Quartets in G-major: The first international meeting on quadruplex DNA. EMBO Rep 8:1003-1010.
    • (2007) EMBO Rep , vol.8 , pp. 1003-1010
    • Bates, P.1    Mergny, J.L.2    Yang, D.3
  • 9
    • 35448930321 scopus 로고    scopus 로고
    • Crystallographic studies of quadruplex nucleic acids
    • Campbell NH, Parkinson GN. 2007. Crystallographic studies of quadruplex nucleic acids. Methods 43:252-263.
    • (2007) Methods , vol.43 , pp. 252-263
    • Campbell, N.H.1    Parkinson, G.N.2
  • 11
    • 65649130074 scopus 로고    scopus 로고
    • Study of binding affinity and selectivity of perylene and coronene derivatives towards duplex and quadruplex DNA by ESI-MS
    • CasagrandeV, Alvino A, Bianco A, Ortaggi G, Franceschin M. 2009. Study of binding affinity and selectivity of perylene and coronene derivatives towards duplex and quadruplex DNA by ESI-MS. J Mass Spectrom 44:530-540.
    • (2009) J Mass Spectrom , vol.44 , pp. 530-540
    • Casagrande, V.1    Alvino, A.2    Bianco, A.3    Ortaggi, G.4    Franceschin, M.5
  • 12
    • 54549092618 scopus 로고    scopus 로고
    • A new telomerase inhibitor and apoptosis-inducing agent in leukemia: Perylene derivative G-quadruplex ligand Tel03
    • Chu B, Yuan G, Zhou J, Ou Y, Zhu P. 2008. A new telomerase inhibitor and apoptosis-inducing agent in leukemia: Perylene derivative G-quadruplex ligand Tel03. Drug Dev Res 69:235-241.
    • (2008) Drug Dev Res , vol.69 , pp. 235-241
    • Chu, B.1    Yuan, G.2    Zhou, J.3    Ou, Y.4    Zhu, P.5
  • 13
    • 25644449554 scopus 로고    scopus 로고
    • A combined QM and MM investigation into guanine quadruplexes
    • Clay EH, Gould IR. 2005. A combined QM and MM investigation into guanine quadruplexes. J Mol Graph Model 24:138-146.
    • (2005) J Mol Graph Model , vol.24 , pp. 138-146
    • Clay, E.H.1    Gould, I.R.2
  • 14
    • 1542297709 scopus 로고    scopus 로고
    • G-rich oligonucleotide inhibits the binding of a nuclear protein to the Ki-ras promoter and strongly reduces cell growth in human carcinoma pancreatic cells
    • Cogoi S, Quadrifoglio F, Xodo LE. 2004. G-rich oligonucleotide inhibits the binding of a nuclear protein to the Ki-ras promoter and strongly reduces cell growth in human carcinoma pancreatic cells. Biochemistry 43:2512-2523.
    • (2004) Biochemistry , vol.43 , pp. 2512-2523
    • Cogoi, S.1    Quadrifoglio, F.2    Xodo, L.E.3
  • 15
    • 33646161250 scopus 로고    scopus 로고
    • Insulin capture by an insulin-linked polymorphic region G-quadruplex DNA oligonucleotides
    • Connor AC, Frederick KA, Morgan EJ, McGown LB. 2006. Insulin capture by an insulin-linked polymorphic region G-quadruplex DNA oligonucleotides. J Am Chem Soc 128:4986-4991.
    • (2006) J Am Chem Soc , vol.128 , pp. 4986-4991
    • Connor, A.C.1    Frederick, K.A.2    Morgan, E.J.3    McGown, L.B.4
  • 16
    • 33750990787 scopus 로고    scopus 로고
    • NMRsolution structure of the major G-quadruplex structure formed in the human BCL2 promoter region
    • Dai JX, Chen D, Jones RA, Hurley LH,Yang D. 2006.NMRsolution structure of the major G-quadruplex structure formed in the human BCL2 promoter region. Nucleic Acids Res 34:5133-5144.
    • (2006) Nucleic Acids Res , vol.34 , pp. 5133-5144
    • Dai, J.X.1    Chen, D.2    Jones, R.A.3    Hurley, L.H.4    Yang, D.5
  • 17
    • 16244377099 scopus 로고    scopus 로고
    • Quadruplex formation by a guanine-rich PNA oligomer
    • Datta B, Bier ME, Roy S, Armitage BA. 2005. Quadruplex formation by a guanine-rich PNA oligomer. J Am Chem Soc 127:4199-4207.
    • (2005) J Am Chem Soc , vol.127 , pp. 4199-4207
    • Datta, B.1    Bier, M.E.2    Roy, S.3    Armitage, B.A.4
  • 18
    • 0036558174 scopus 로고    scopus 로고
    • Investigation of quadruplex oligonucleotide-drug interactions by electrospray ionization mass spectrometry
    • David WM, Brodbelt J, Kerwin SM, Thomas PW. 2002. Investigation of quadruplex oligonucleotide-drug interactions by electrospray ionization mass spectrometry. Anal Chem 74:2029-2033.
    • (2002) Anal Chem , vol.74 , pp. 2029-2033
    • David, W.M.1    Brodbelt, J.2    Kerwin, S.M.3    Thomas, P.W.4
  • 19
    • 1042268168 scopus 로고    scopus 로고
    • G-quartets 40 years later: From 50-GMP to molecular biology and supramolecular chemistry
    • Davis JT. 2004. G-quartets 40 years later: From 50-GMP to molecular biology and supramolecular chemistry. Angew Chem Int Ed 43:668-698.
    • (2004) Angew Chem Int Ed , vol.43 , pp. 668-698
    • Davis, J.T.1
  • 20
    • 28944442742 scopus 로고    scopus 로고
    • Evidence for the presence of a guanine quadruplex forming region within a polypurine tract of the hypoxia inducible factor 1R promoter
    • De Armond R,Wood S, SunDY, Hurley LH, EbbinghausSW. 2005. Evidence for the presence of a guanine quadruplex forming region within a polypurine tract of the hypoxia inducible factor 1R promoter. Biochemistry 44:16341-16350.
    • (2005) Biochemistry , vol.44 , pp. 16341-16350
    • De Armond, R.1    Wood, S.2    Sun, D.Y.3    Hurley, L.H.4    Ebbinghaus, S.W.5
  • 22
    • 0344641913 scopus 로고    scopus 로고
    • Sequence-specific DNA recognition by polyamides
    • Dervan PB, Burli RW. 1999. Sequence-specific DNA recognition by polyamides. Curr Opin Chem Biol 3:688-693.
    • (1999) Curr Opin Chem Biol , vol.3 , pp. 688-693
    • Dervan, P.B.1    Burli, R.W.2
  • 23
    • 33646462913 scopus 로고    scopus 로고
    • Deconvoluting the structural and drug-recognition complexity of the G-quadruplex-forming region upstream of the bcl-2 P1 promoter
    • Dexheimer TS, Sun D, Hurley LH. 2006. Deconvoluting the structural and drug-recognition complexity of the G-quadruplex-forming region upstream of the bcl-2 P1 promoter. J Am Chem Soc 128:5404-5415.
    • (2006) J Am Chem Soc , vol.128 , pp. 5404-5415
    • Dexheimer, T.S.1    Sun, D.2    Hurley, L.H.3
  • 26
    • 0032554620 scopus 로고    scopus 로고
    • Effect ofDNAsecondary structure on human telomerase activity
    • Fletcher TM, Sun DK, Salazar M, Hurley LH. 1998. Effect ofDNAsecondary structure on human telomerase activity. Biochemistry 37:5536-5541.
    • (1998) Biochemistry , vol.37 , pp. 5536-5541
    • Fletcher, T.M.1    Sun, D.K.2    Salazar, M.3    Hurley, L.H.4
  • 27
    • 66149087629 scopus 로고    scopus 로고
    • G-Quadruplex DNA structures and organic chemistry more than one connection
    • Franceschin M. 2009. G-Quadruplex DNA structures and organic chemistry more than one connection. Eur J Org Chem 14:2225-2238.
    • (2009) Eur J Org Chem , vol.14 , pp. 2225-2238
    • Franceschin, M.1
  • 28
    • 0034616835 scopus 로고    scopus 로고
    • 1:1 Complex of guanine quartet with alkali metal cations detected by electrospray ionization mass spectrometry
    • Fukushima K, Iwahashi H. 2000. 1:1 Complex of guanine quartet with alkali metal cations detected by electrospray ionization mass spectrometry. Chem Commun 11:895-896.
    • (2000) Chem Commun , vol.11 , pp. 895-896
    • Fukushima, K.1    Iwahashi, H.2
  • 30
    • 33846573909 scopus 로고    scopus 로고
    • Stabilization and structure of telomeric and c-myc region intramolecular G-quadruplex: The role of central cations and small planar ligands
    • Gabelica V, Baker ES, Teulade-Fichou MP, De Pauw E, Bowers MT. 2007. Stabilization and structure of telomeric and c-myc region intramolecular G-quadruplex: The role of central cations and small planar ligands. J Am Chem Soc 129:895-904.
    • (2007) J Am Chem Soc , vol.129 , pp. 895-904
    • Gabelica, V.1    Baker, E.S.2    Teulade-Fichou, M.P.3    De Pauw, E.4    Bowers, M.T.5
  • 32
    • 68849109694 scopus 로고    scopus 로고
    • A simple method to determine electrospray response factors of noncovalent complexes
    • Gabelica V, Rosu F, De Pauw E. 2009. A simple method to determine electrospray response factors of noncovalent complexes. Anal Chem 81:6708-6715.
    • (2009) Anal Chem , vol.81 , pp. 6708-6715
    • Gabelica, V.1    Rosu, F.2    De Pauw, E.3
  • 33
    • 0001413545 scopus 로고
    • Detection of noncovalent receptorligand complexes by mass spectrumetry
    • Ganem B, Li YT, Henion JD. 1991. Detection of noncovalent receptorligand complexes by mass spectrumetry. J Am Chem Soc 113:6294-6296.
    • (1991) J Am Chem Soc , vol.113 , pp. 6294-6296
    • Ganem, B.1    Li, Y.T.2    Henion, J.D.3
  • 37
    • 67650459178 scopus 로고    scopus 로고
    • A hydrophilic three side-chained triazatruxene as a new strong and selective G-quadruplex ligand
    • Ginnari-Satriani L, Casagrande V, Bianco A, Ortaggi G, Franceschin M. 2009. A hydrophilic three side-chained triazatruxene as a new strong and selective G-quadruplex ligand. Org Biomol Chem 7: 2513-2516.
    • (2009) Org Biomol Chem , vol.7 , pp. 2513-2516
    • Ginnari-Satriani, L.1    Casagrande, V.2    Bianco, A.3    Ortaggi, G.4    Franceschin, M.5
  • 40
    • 0036491454 scopus 로고    scopus 로고
    • CD of single-stranded, doublestranded, and G-quartet nucleic acids in complexes with a singlestranded DNA-binding protein
    • Gray DM, GrayCW, Mou TC,Wen JD. 2002. CD of single-stranded, doublestranded, and G-quartet nucleic acids in complexes with a singlestranded DNA-binding protein. Enantiomer 7:49-58.
    • (2002) Enantiomer , vol.7 , pp. 49-58
    • Gray, D.M.1    Gray, C.W.2    Mou, T.C.3    Wen, J.D.4
  • 41
    • 34250682662 scopus 로고    scopus 로고
    • Guanines are a quartet's best friend: Impact of base substitutions on the kinetics and stability of tetramolecular quadruplexes
    • Gros J, Rosu F, Amrane S, De Cian A, Gabelica V, Lacroix L, Mergny JL. 2007. Guanines are a quartet's best friend: impact of base substitutions on the kinetics and stability of tetramolecular quadruplexes. Nucleic Acids Res 35:3064-3075.
    • (2007) Nucleic Acids Res , vol.35 , pp. 3064-3075
    • Gros, J.1    Rosu, F.2    Amrane, S.3    De Cian, A.4    Gabelica, V.5    Lacroix, L.6    Mergny, J.L.7
  • 44
    • 34447643773 scopus 로고    scopus 로고
    • Bimolecular quadruplexes and their transitions to higher-order molecular structures detected by ESI-FTICR-MS
    • Guo XH, Liu SY, Yu Z. 2007. Bimolecular quadruplexes and their transitions to higher-order molecular structures detected by ESI-FTICR-MS. JAm Soc Mass Spectrom 18:1467-1476.
    • (2007) J Am Soc Mass Spectrom , vol.18 , pp. 1467-1476
    • Guo, X.H.1    Liu, S.Y.2    Yu, Z.3
  • 45
    • 0023663911 scopus 로고
    • Telomeric DNA oligonucleotides form novel intramolecular structures containing guanine-guanine base pairs
    • Hendrson E, Hardin CC,Walk SK, Tinoco I, Blackburn EH. 1987. Telomeric DNA oligonucleotides form novel intramolecular structures containing guanine-guanine base pairs. Cell 51:899-908.
    • (1987) Cell , vol.51 , pp. 899-908
    • Hendrson, E.1    Hardin, C.C.2    Walk, S.K.3    Tinoco, I.4    Blackburn, E.H.5
  • 46
    • 70350330210 scopus 로고    scopus 로고
    • G-quadruplex recognition by macrocyclic hexaoxazole (6OTD) dimer: Greater selectivity than monomer
    • Iida K, Tera M, Hirokawa T, Shin-ya K, Nagasawa K. 2009. G-quadruplex recognition by macrocyclic hexaoxazole (6OTD) dimer: Greater selectivity than monomer. Chem Commun 42:6481-6483.
    • (2009) Chem Commun , vol.42 , pp. 6481-6483
    • Iida, K.1    Tera, M.2    Hirokawa, T.3    Shin-Ya, K.4    Nagasawa, K.5
  • 47
    • 1542470317 scopus 로고    scopus 로고
    • How a modification (8-aza-3-deaza-2'-deoxyguanosine) influences the quadruplex structure of Hotoda's 6-Mer TGGGAG with 5'- and 30-end modifications
    • Jakša S, Kralj B, Pannecouque C, Balzarini J, De Clercq E, Kobe J. 2004. How a modification (8-aza-3-deaza-2'-deoxyguanosine) influences the quadruplex structure of Hotoda's 6-Mer TGGGAG with 5'- and 30-end modifications. Nucleosides Nucleotides Nucleic Acids 23:77-88.
    • (2004) Nucleosides Nucleotides Nucleic Acids , vol.23 , pp. 77-88
    • Jakša, S.1    Kralj, B.2    Pannecouque, C.3    Balzarini, J.4    De Clercq, E.5    Kobe, J.6
  • 50
    • 4444285877 scopus 로고    scopus 로고
    • Formation of an interlocked quadruplex dimer by d(GGGT)
    • Krishnan-Ghosh Y, Liu DS, Balasubramanian S. 2004a. Formation of an interlocked quadruplex dimer by d(GGGT). J Am Chem Soc 126: 11009-11016.
    • (2004) J Am Chem Soc , vol.126 , pp. 11009-11016
    • Krishnan-Ghosh, Y.1    Liu, D.S.2    Balasubramanian, S.3
  • 52
    • 21844460574 scopus 로고    scopus 로고
    • Dynamic covalent chemistry on self-templating PNA oligomers: Formation of a bimolecular PNA quadruplex
    • Krishnan-Ghosh Y, Whitneya AM, Balasubramanian S. 2005. Dynamic covalent chemistry on self-templating PNA oligomers: Formation of a bimolecular PNA quadruplex. Chem Commun 24:3068-3070.
    • (2005) Chem Commun , vol.24 , pp. 3068-3070
    • Krishnan-Ghosh, Y.1    Whitneya, A.M.2    Balasubramanian, S.3
  • 54
    • 41149139667 scopus 로고    scopus 로고
    • Investigation of formation, recognition, stabilization, and conversion of dimeric G-quadruplexes of HIV-1 integrase inhibitors by electrospray ionization mass spectrometry
    • Li HH, Yuan G, Du DM. 2008. Investigation of formation, recognition, stabilization, and conversion of dimeric G-quadruplexes of HIV-1 integrase inhibitors by electrospray ionization mass spectrometry. JAm Soc Mass Spectrom 19:550-559.
    • (2008) J Am Soc Mass Spectrom , vol.19 , pp. 550-559
    • Li, H.H.1    Yuan, G.2    Du, D.M.3
  • 55
    • 62349129278 scopus 로고    scopus 로고
    • Spectroscopy probing of the formation, recognition, and conversion of a G-quadruplex in the promoter region of the bcl-2 oncogene
    • Li HH, Liu YQ, Lin S, Yuan G. 2009. Spectroscopy probing of the formation, recognition, and conversion of a G-quadruplex in the promoter region of the bcl-2 oncogene. Chem Eur J 15:2445-2452.
    • (2009) Chem Eur J , vol.15 , pp. 2445-2452
    • Li, H.H.1    Liu, Y.Q.2    Lin, S.3    Yuan, G.4
  • 56
    • 73649108897 scopus 로고    scopus 로고
    • Collision-induced dissociation of dimeric Gquadruplexes of HIV-1 integrase inhibitors and their complexes by tandem-in-time mass spectrometry
    • Li HH, Yuan G. 2009. Collision-induced dissociation of dimeric Gquadruplexes of HIV-1 integrase inhibitors and their complexes by tandem-in-time mass spectrometry. Eur J Mass Spectrom 15:731-737.
    • (2009) Eur J Mass Spectrom , vol.15 , pp. 731-737
    • Li, H.H.1    Yuan, G.2
  • 57
    • 33845210614 scopus 로고    scopus 로고
    • Cation exchange in lipophilic G-quadruplexes: Not all ion binding sites are equal
    • Ma L, Iezzi M, Kaucher MS, Lam YF, Davis JT. 2006. Cation exchange in lipophilic G-quadruplexes: not all ion binding sites are equal. J Am Chem Soc 128:15269-15277.
    • (2006) J Am Chem Soc , vol.128 , pp. 15269-15277
    • Ma, L.1    Iezzi, M.2    Kaucher, M.S.3    Lam, Y.F.4    Davis, J.T.5
  • 58
    • 0027467617 scopus 로고
    • Thrombinbinding DNA aptamer forms a unimolecular quadruplex structure in solution
    • Macaya RF, Schultze P, Smith FW, Roe JA, Feigon J. 1993. Thrombinbinding DNA aptamer forms a unimolecular quadruplex structure in solution. Proc Natl Acad Sci USA 90:3745-3749.
    • (1993) Proc Natl Acad Sci USA , vol.90 , pp. 3745-3749
    • Macaya, R.F.1    Schultze, P.2    Smith, F.W.3    Roe, J.A.4    Feigon, J.5
  • 60
    • 33645110876 scopus 로고    scopus 로고
    • Evaluation of binding of perylene diimide and benzannulated perylene diimide ligands toDNAby electrospray ionization mass spectrometry
    • Mazzitelli CL, Brodbelt JS, Kern JT, Rodriguez ML, Kerwin SM. 2006. Evaluation of binding of perylene diimide and benzannulated perylene diimide ligands toDNAby electrospray ionization mass spectrometry. J Am Soc Mass Spectrom 17:593-604.
    • (2006) J Am Soc Mass Spectrom , vol.17 , pp. 593-604
    • Mazzitelli, C.L.1    Brodbelt, J.S.2    Kern, J.T.3    Rodriguez, M.L.4    Kerwin, S.M.5
  • 61
    • 34548688162 scopus 로고    scopus 로고
    • Gas-phase stability of G-quadruplexDNAdetermined by electrospray ionization tandem mass spectrometry and molecular dynamics simulations
    • Mazzitelli CL,Wang JM, Smith SI, Brodbelt JS. 2007. Gas-phase stability of G-quadruplexDNAdetermined by electrospray ionization tandem mass spectrometry and molecular dynamics simulations. J Am Soc Mass Spectrom 18:1760-1773.
    • (2007) J Am Soc Mass Spectrom , vol.18 , pp. 1760-1773
    • Mazzitelli, C.L.1    Wang, J.M.2    Smith, S.I.3    Brodbelt, J.S.4
  • 63
    • 0037350666 scopus 로고    scopus 로고
    • Complexes of cadmiumion with guanine bases detected by electrospray ionization mass spectrometry
    • Moriwaki H. 2003. Complexes of cadmiumion with guanine bases detected by electrospray ionization mass spectrometry. J Mass Spectrom 38: 321-327.
    • (2003) J Mass Spectrom , vol.38 , pp. 321-327
    • Moriwaki, H.1
  • 64
    • 0037460141 scopus 로고    scopus 로고
    • Induction of a remarkable conformational change in a human telomeric sequence by the binding of naphthyridine dimer: Inhibition of the elongation of a telomeric repeat by telomerase
    • Nakatani K, Hagihara S, Sando S, Sakamoto S, Yamaguchi K, Maesawa C, Saito I. 2003. Induction of a remarkable conformational change in a human telomeric sequence by the binding of naphthyridine dimer: inhibition of the elongation of a telomeric repeat by telomerase. J Am Chem Soc 125:662-666.
    • (2003) J Am Chem Soc , vol.125 , pp. 662-666
    • Nakatani, K.1    Hagihara, S.2    Sando, S.3    Sakamoto, S.4    Yamaguchi, K.5    Maesawa, C.6    Saito, I.7
  • 65
    • 47649109401 scopus 로고    scopus 로고
    • Quadruplex DNA crystal structures and drug design
    • Neidle S, Parkinson GN. 2008. Quadruplex DNA crystal structures and drug design. Biochimie 90:1184-1196.
    • (2008) Biochimie , vol.90 , pp. 1184-1196
    • Neidle, S.1    Parkinson, G.N.2
  • 66
    • 35048816412 scopus 로고    scopus 로고
    • Telomerase recognizes G-quadruplex and linear DNA as distinct substrates
    • Oganesian L, Graham ME, Robinson PJ, Bryan TM. 2007. Telomerase recognizes G-quadruplex and linear DNA as distinct substrates. Biochemistry 46:11279-11290.
    • (2007) Biochemistry , vol.46 , pp. 11279-11290
    • Oganesian, L.1    Graham, M.E.2    Robinson, P.J.3    Bryan, T.M.4
  • 67
    • 77449091090 scopus 로고    scopus 로고
    • Real-time observation of G-quadruplex dynamics using single-molecule FRET microscopy
    • Okumus B, Ha T. 2010. Real-time observation of G-quadruplex dynamics using single-molecule FRET microscopy. Methods Mol Biol 608:81-96.
    • (2010) Methods Mol Biol , vol.608 , pp. 81-96
    • Okumus, B.1    Ha, T.2
  • 69
    • 67650582004 scopus 로고    scopus 로고
    • Synthesis of quadruplex-forming tetra-end-linked oligonucleotides: Effects of the linker size on quadruplex topology and stability
    • Oliviero G, Borbone N, Amato J, D'Errico S, Galeone A, Piccialli G,Varra M, Mayol L. 2009. Synthesis of quadruplex-forming tetra-end-linked oligonucleotides: Effects of the linker size on quadruplex topology and stability. Biopolymers 91:466-477.
    • (2009) Biopolymers , vol.91 , pp. 466-477
    • Oliviero, G.1    Borbone, N.2    Amato, J.3    D'Errico, S.4    Galeone, A.5    Piccialli, G.6    Varra, M.7    Mayol, L.8
  • 71
    • 23244433818 scopus 로고    scopus 로고
    • Cross-links of quadruplex structures from human telomeric DNA by dinuclear platinum complexes showthe flexibility of both structures
    • Ourliac-Garnier I, Elizondo-Riojas MA, Redon S, Farrell NP, Bombard S. 2005. Cross-links of quadruplex structures from human telomeric DNA by dinuclear platinum complexes showthe flexibility of both structures. Biochemistry 44:10620-10634.
    • (2005) Biochemistry , vol.44 , pp. 10620-10634
    • Ourliac-Garnier, I.1    Elizondo-Riojas, M.A.2    Redon, S.3    Farrell, N.P.4    Bombard, S.5
  • 72
    • 61849133931 scopus 로고    scopus 로고
    • Interaction between cationic zinc porphyrin and lead ion induced telomeric guanine quadruplexes: Evidence for endstacking
    • Pan JX, Zhang SP. 2009. Interaction between cationic zinc porphyrin and lead ion induced telomeric guanine quadruplexes: Evidence for endstacking. J Biol Inorg Chem 14:401-407.
    • (2009) J Biol Inorg Chem , vol.14 , pp. 401-407
    • Pan, J.X.1    Zhang, S.P.2
  • 73
    • 35448983988 scopus 로고    scopus 로고
    • Circular dichroism of quadruplex DNAs: Applications to structure, cation effects and ligand binding
    • Paramasivan S, Rujan I, Bolton PH. 2007. Circular dichroism of quadruplex DNAs: Applications to structure, cation effects and ligand binding. Methods 43:324-331.
    • (2007) Methods , vol.43 , pp. 324-331
    • Paramasivan, S.1    Rujan, I.2    Bolton, P.H.3
  • 74
    • 53849109222 scopus 로고    scopus 로고
    • Combining G-quadruplex targeting motifs on a single peptide nucleic acid scaffold: A hybrid (3+1) PNA-DNA bimolecular quadruplex
    • Paul A, Sengupta P, Krishnan Y, Ladame S. 2008. Combining G-quadruplex targeting motifs on a single peptide nucleic acid scaffold: A hybrid (3+1) PNA-DNA bimolecular quadruplex. Chem Eur J 14:8682-8689.
    • (2008) Chem Eur J , vol.14 , pp. 8682-8689
    • Paul, A.1    Sengupta, P.2    Krishnan, Y.3    Ladame, S.4
  • 75
    • 34247160470 scopus 로고    scopus 로고
    • Structure of an unprecedented G-quadruplex scaffold in the human c-kit promoter
    • Phan AT, Kuryavyi V, Burge S, Neidle S, Patel DJ. 2007. Structure of an unprecedented G-quadruplex scaffold in the human c-kit promoter. J Am Chem Soc 129:4386-4392.
    • (2007) J Am Chem Soc , vol.129 , pp. 4386-4392
    • Phan, A.T.1    Kuryavyi, V.2    Burge, S.3    Neidle, S.4    Patel, D.J.5
  • 77
    • 65249183227 scopus 로고    scopus 로고
    • Evaluation of binding selectivities and affinities of platinum-based quadruplex interactive complexes by electrospray ionization mass spectrometry
    • Pierce SE, Kieltyka R, Sleiman HF, Brodbelt JS. 2009. Evaluation of binding selectivities and affinities of platinum-based quadruplex interactive complexes by electrospray ionization mass spectrometry. Biopolymers 91:233-243.
    • (2009) Biopolymers , vol.91 , pp. 233-243
    • Pierce, S.E.1    Kieltyka, R.2    Sleiman, H.F.3    Brodbelt, J.S.4
  • 79
    • 35448991314 scopus 로고    scopus 로고
    • Surface plasmon resonance for probing quadruplex folding and interactions with proteins and small molecules
    • Redman JE. 2007. Surface plasmon resonance for probing quadruplex folding and interactions with proteins and small molecules. Methods 43:302-312.
    • (2007) Methods , vol.43 , pp. 302-312
    • Redman, J.E.1
  • 81
    • 0042318475 scopus 로고    scopus 로고
    • Selective interaction of ethidium derivatives with quadruplexes: An equilibriumdialysis and electrospray ionization mass spectrometry analysis
    • Rosu F, De Pauw E, Guittat L, Alberti P, Lacroix L, Mailliet P, Riou JF, Mergny JL. 2003a. Selective interaction of ethidium derivatives with quadruplexes: An equilibriumdialysis and electrospray ionization mass spectrometry analysis. Biochemistry 42:10361-10371.
    • (2003) Biochemistry , vol.42 , pp. 10361-10371
    • Rosu, F.1    De Pauw, E.2    Guittat, L.3    Alberti, P.4    Lacroix, L.5    Mailliet, P.6    Riou, J.F.7    Mergny, J.L.8
  • 82
    • 0242609879 scopus 로고    scopus 로고
    • Telomestatin-induced stabilization of the human telomeric DNA quadruplex monitored by electrospray mass spectrometry
    • Rosu F, Gabelica V, Shin-ya K, De Pauw E. 2003b. Telomestatin-induced stabilization of the human telomeric DNA quadruplex monitored by electrospray mass spectrometry. Chem Commun 21:2702-2703.
    • (2003) Chem Commun , vol.21 , pp. 2702-2703
    • Rosu, F.1    Gabelica, V.2    Shin-Ya, K.3    De Pauw, E.4
  • 83
    • 33645401742 scopus 로고    scopus 로고
    • G-quadruplexes can maintain their structure in the gas phase
    • Rueda M, Luque FJ, Orozco M. 2006. G-quadruplexes can maintain their structure in the gas phase. J Am Chem Soc 128:3608-3619.
    • (2006) J Am Chem Soc , vol.128 , pp. 3608-3619
    • Rueda, M.1    Luque, F.J.2    Orozco, M.3
  • 84
    • 0037463105 scopus 로고    scopus 로고
    • Hyperstranded DNA architectures observed by cold-spray ionization mass spectrometry
    • Sakamoto S, Yamaguchi K. 2003. Hyperstranded DNA architectures observed by cold-spray ionization mass spectrometry. Angew Chem Int Ed 42:905-908.
    • (2003) Angew Chem Int Ed , vol.42 , pp. 905-908
    • Sakamoto, S.1    Yamaguchi, K.2
  • 85
    • 0034635561 scopus 로고    scopus 로고
    • Characterization of selfassembling nano-sized structures by means of coldspray ionization mass spectrometry
    • Sakamoto S, Fujita M, Kim K, Yamaguchi K. 2000. Characterization of selfassembling nano-sized structures by means of coldspray ionization mass spectrometry. Tetrahedron 56:955-964.
    • (2000) Tetrahedron , vol.56 , pp. 955-964
    • Sakamoto, S.1    Fujita, M.2    Kim, K.3    Yamaguchi, K.4
  • 86
    • 0037459495 scopus 로고    scopus 로고
    • Formation and destruction of the guanine quartet in solution observed by cold-spray ionization mass spectrometry
    • Sakamoto S, Nakatani K, Saito I, Yamaguchi K. 2003. Formation and destruction of the guanine quartet in solution observed by cold-spray ionization mass spectrometry. Chem Commun 6:788-789.
    • (2003) Chem Commun , vol.6 , pp. 788-789
    • Sakamoto, S.1    Nakatani, K.2    Saito, I.3    Yamaguchi, K.4
  • 88
    • 0023788886 scopus 로고
    • Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications for meiosis
    • Sen D, Gilbert W. 1988. Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications for meiosis. Nature 334:364-366.
    • (1988) Nature , vol.334 , pp. 364-366
    • Sen, D.1    Gilbert, W.2
  • 89
    • 4544344212 scopus 로고    scopus 로고
    • Enhancing Hoogsteen interaction: A pyrrole-containing purine nucleoside that competes with guanosine self-assembly
    • Sessler JL, Jayawickramarajah J, Sherman CL, Brodbelt JS. 2004. Enhancing Hoogsteen interaction: A pyrrole-containing purine nucleoside that competes with guanosine self-assembly. J Am Chem Soc 126:11460-11461.
    • (2004) J Am Chem Soc , vol.126 , pp. 11460-11461
    • Sessler, J.L.1    Jayawickramarajah, J.2    Sherman, C.L.3    Brodbelt, J.S.4
  • 91
    • 47649116805 scopus 로고    scopus 로고
    • Single molecule conformational analysis of DNA G-quadruplexes
    • Shirude PS, Balasubramanian S. 2008. Single molecule conformational analysis of DNA G-quadruplexes. Biochimie 90:1197-1206.
    • (2008) Biochimie , vol.90 , pp. 1197-1206
    • Shirude, P.S.1    Balasubramanian, S.2
  • 92
    • 0037015078 scopus 로고    scopus 로고
    • Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription
    • Siddiqui-Jain A, Grand CL, Bearss DJ, Hurley LH. 2002. Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription. Proc Natl Acad Sci USA 99:11593-11598.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 11593-11598
    • Siddiqui-Jain, A.1    Grand, C.L.2    Bearss, D.J.3    Hurley, L.H.4
  • 93
    • 0032030327 scopus 로고    scopus 로고
    • DNA tetraplex formation in the control region of c-myc
    • Simonsson T, Pecinka P, Kubista M. 1998. DNA tetraplex formation in the control region of c-myc. Nucleic Acids Res 26:1167-1172.
    • (1998) Nucleic Acids Res , vol.26 , pp. 1167-1172
    • Simonsson, T.1    Pecinka, P.2    Kubista, M.3
  • 95
    • 69149089536 scopus 로고    scopus 로고
    • Photocrosslinking of human telomeric G-quadruplex loops by anti cyclobutane thymine dimer formation
    • Su DGT, Fang HF, Gross ML, Taylor JSA. 2009. Photocrosslinking of human telomeric G-quadruplex loops by anti cyclobutane thymine dimer formation. Proc Natl Acad Sci USA 106:12861-12866.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 12861-12866
    • Su, D.G.T.1    Fang, H.F.2    Gross, M.L.3    Taylor, J.S.A.4
  • 96
    • 27244435211 scopus 로고    scopus 로고
    • Facilitation of a structural transition in the polypurine/polypyrimidine tract within the proximal promoter region of the human VEGF gene by the presence of potassium and G-quadruplexinteractive agents
    • Sun DY, Guo KX, Rusche JJ, Hurley LH. 2005. Facilitation of a structural transition in the polypurine/polypyrimidine tract within the proximal promoter region of the human VEGF gene by the presence of potassium and G-quadruplexinteractive agents. Nucleic Acids Res 33:6070-6080.
    • (2005) Nucleic Acids Res , vol.33 , pp. 6070-6080
    • Sun, D.Y.1    Guo, K.X.2    Rusche, J.J.3    Hurley, L.H.4
  • 99
    • 20144369806 scopus 로고    scopus 로고
    • Highly prevalent putative quadruplex sequence motifs in human DNA
    • Todd AK, Johnston M, Neidle S. 2005. Highly prevalent putative quadruplex sequence motifs in human DNA. Nucleic Acid Res 33:2901-2907.
    • (2005) Nucleic Acid Res , vol.33 , pp. 2901-2907
    • Todd, A.K.1    Johnston, M.2    Neidle, S.3
  • 100
    • 0037425570 scopus 로고    scopus 로고
    • G-quadruplex formation of thrombin-binding aptamer detected by electrospray ionization mass spectrometry
    • Vairamani M, Gross ML. 2003. G-quadruplex formation of thrombin-binding aptamer detected by electrospray ionization mass spectrometry. J Am Chem Soc 125:42-43.
    • (2003) J Am Chem Soc , vol.125 , pp. 42-43
    • Vairamani, M.1    Gross, M.L.2
  • 103
    • 35448988544 scopus 로고    scopus 로고
    • NMR methods for studying quadruplex nucleic acids
    • Webba da Silva M. 2007. NMR methods for studying quadruplex nucleic acids. Methods 43:264-277.
    • (2007) Methods , vol.43 , pp. 264-277
    • Webba Da Silva, M.1
  • 105
    • 0035891939 scopus 로고    scopus 로고
    • Design of a new electrospray ion mobility mass spectrometer
    • Wyttenbach T, Kempe PR, Bowers MT. 2001. Design of a new electrospray ion mobility mass spectrometer. Int J Mass Spectrom 212:13-23.
    • (2001) Int J Mass Spectrom , vol.212 , pp. 13-23
    • Wyttenbach, T.1    Kempe, P.R.2    Bowers, M.T.3
  • 106
    • 70349773244 scopus 로고    scopus 로고
    • Mass spectrometric determination of ILPR G-quadruplex binding sites in insulin and IGF-2
    • Xiao JF, McGown LB., 2009. Mass spectrometric determination of ILPR G-quadruplex binding sites in insulin and IGF-2. JAmSoc Mass Spectrom 20:1974-1982.
    • (2009) J Am Soc Mass Spectrom , vol.20 , pp. 1974-1982
    • Xiao, J.F.1    McGown, L.B.2
  • 108
    • 70349783581 scopus 로고    scopus 로고
    • Click chemistry for the identification of G-quadruplex structures: Discovery of a DNA-RNA G-quadruplex
    • Xu Y, SuzukiY, Komiyama M. 2009. Click chemistry for the identification of G-quadruplex structures: discovery of a DNA-RNA G-quadruplex. Angew Chem Int Ed 48:3281-3284.
    • (2009) Angew Chem Int Ed , vol.48 , pp. 3281-3284
    • Xu, Y.1    SuzukiY Komiyama, M.2
  • 109
    • 0035819609 scopus 로고    scopus 로고
    • Dynamic assembly of coordination boxes from (en)Pd(II) unit and a rectangular panel-like ligand:NMR, CSI-MS, and X-ray studies
    • Yamanoi Y, Sakamoto Y, Kusukawa T, Fujita M, Sakamoto S, Yamaguchi K. 2001. Dynamic assembly of coordination boxes from (en)Pd(II) unit and a rectangular panel-like ligand:NMR, CSI-MS, and X-ray studies. J Am Chem Soc 123:980-981.
    • (2001) J Am Chem Soc , vol.123 , pp. 980-981
    • Yamanoi, Y.1    Sakamoto, Y.2    Kusukawa, T.3    Fujita, M.4    Sakamoto, S.5    Yamaguchi, K.6
  • 110
    • 33748168091 scopus 로고
    • Electrospray ion source. Another variation on the free-jet theme
    • Yamashita M, Fenn JB. 1984. Electrospray ion source. Another variation on the free-jet theme. J Phys Chem 88:4451-4459.
    • (1984) J Phys Chem , vol.88 , pp. 4451-4459
    • Yamashita, M.1    Fenn, J.B.2
  • 111
    • 66749106299 scopus 로고    scopus 로고
    • Formation of an intramolecular G-quadruplex of human telomere induced by poly(L-lysine) under salt-deficient conditions
    • Zhang XF, Xiang JF, Tian MY, Yang QF, Sun HX, Yang S, Tang YL. 2009. Formation of an intramolecular G-quadruplex of human telomere induced by poly(L-lysine) under salt-deficient conditions. J Phys Chem B 113:7662-7667.
    • (2009) J Phys Chem B , vol.113 , pp. 7662-7667
    • Zhang, X.F.1    Xiang, J.F.2    Tian, M.Y.3    Yang, Q.F.4    Sun, H.X.5    Yang, S.6    Tang, Y.L.7
  • 112
    • 34250303124 scopus 로고    scopus 로고
    • Specific recognition of human telomeric G-quadruplex DNA with small molecules and the conformational analysis by ESI mass spectrometry and circular dichroism spectropolarimetry
    • Zhou J,Yuan G. 2007. Specific recognition of human telomeric G-quadruplex DNA with small molecules and the conformational analysis by ESI mass spectrometry and circular dichroism spectropolarimetry. Chem Eur J 13:5018-5023.
    • (2007) Chem Eur J , vol.13 , pp. 5018-5023
    • Zhou, J.1    Yuan, G.2
  • 113
    • 16544389963 scopus 로고    scopus 로고
    • Synthesis of unimolecularly circular G-quadruplexes as prospective molecular probes
    • Zhou TY, Chen GS,Wang YF, Zhang Q, Yang M, Li TH. 2004. Synthesis of unimolecularly circular G-quadruplexes as prospective molecular probes. Nucleic Acids Res 32:1-9.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1-9
    • Zhou, T.Y.1    Chen, G.S.2    Wang, Y.F.3    Zhang, Q.4    Yang, M.5    Li, T.H.6
  • 114
    • 33846410277 scopus 로고    scopus 로고
    • Formation and stability of Gquadruplexes self-assembled from guanine-rich strands
    • Zhou J, Yuan G, Liu JJ, Zhan CG. 2007. Formation and stability of Gquadruplexes self-assembled from guanine-rich strands. Chem Eur J 13:945-949.
    • (2007) Chem Eur J , vol.13 , pp. 945-949
    • Zhou, J.1    Yuan, G.2    Liu, J.J.3    Zhan, C.G.4


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