Recent advances in single-molecule detection on micro- and nano-fluidic devices

Electrophoresis

Volumn 32, Issue 23, 2011, Pages 3308-3318

  Liu, Chang ^a,b   Qu, Yueyang ^c   Luo, Yong ^c   Fang, Ning ^a  

^a IOWA STATE UNIVERSITY   (United States)

^b UNIVERSITY OF BRITISH COLUMBIA   (Canada)

^c DALIAN UNIVERSITY OF TECHNOLOGY   (China)

Author keywords

Lab on a chip; Microfluidics; Miniaturization; Single molecule detection; Ultra sensitive detection

Indexed keywords

LAB-ON-A-CHIP; MICROFLUIDICS; MOLECULAR STRUCTURE; NANOFLUIDICS; SIGNAL TO NOISE RATIO;

MICRO-FLUIDICS; MICRO/NANO; MICROFLUIDICS DEVICES; MINIATURISATION; NANOFLUIDIC DEVICE; SENSITIVE DETECTION; SINGLE-MOLECULE DETECTION; STATICS AND DYNAMICS; ULTRA-SENSITIVE DETECTION; ULTRASENSITIVE;

MOLECULES;

CHEMICAL REACTION; CHEMICAL STRUCTURE; CYLINDRICAL ILLUMINATION CONFOCAL SPECTROSCOPY; DEVICES; DIFFUSION; DNA SEQUENCE; FLUORESCENCE MICROSCOPY; FLUORESCENCE RESONANCE ENERGY TRANSFER; LAB ON A CHIP; MICROFLUIDIC DEVICE; MICROFLUIDICS; MOLECULAR INTERACTION; MOLECULE; NANOFLUIDIC DEVICE; NANOFLUIDICS; OPTICS; PARAMETERS; PROTEIN INTERACTION; REVIEW; SIGNAL NOISE RATIO; SIGNAL PROCESSING; SINGLE MOLECULE DETECTION; SINGLE MOLECULE FLUORESCENCE RESONANCE ENERGY TRANSFER; SPECTROSCOPY; TOTAL INTERNAL REFLECTION FLUORESCENCE MICROSCOPY;

EID: 82755189901     PISSN: 01730835     EISSN: 15222683     Source Type: Journal    
DOI: 10.1002/elps.201100159     Document Type: Review

References (139)

1. Rotman, B., Proc. Natl. Acad. Sci. USA 1961, 47, 1981-1991.
2. Arora, A., Simone, G., Salieb-Beugelaar, G. B., Kim, J. T., Manz, A., Anal. Chem. 2010, 82, 4830-4847.
3. Salieb-Beugelaar, G. B., Simone, G., Arora, A., Philippi, A., Manz, A., Anal. Chem. 2010, 82, 4848-4864.
4. Dittrich, P. S., Manz, A., Anal. Bioanal. Chem. 2005, 382, 1771-1782.
5. Brewer, L. R., Bianco, P. R., Nat. Methods 2008, 5, 517-525.
6. Chiu, D. T., Anal. Bioanal. Chem. 2007, 387, 17-20.
7. Craighead, H., Nature 2006, 442, 387-393.
8. Leuba, S. H., Wheeler, T. B., Cheng, C.-M., Le Duc, P. R., Fernandez-Sierra, M., Quinones, E., Methods 2009, 47, 214-222.
9. Levy, S. L., Craighead, H. G., Chem. Soc. Rev. 2010, 39, 1133-1152.
10. Spetzler, D., York, J., Dobbin, C., Martin, J., Ishmukhametov, R., Day, L., Yu, J., Kang, H., Porter, K., Hornung, T., Frasch, W. D., Lab Chip 2007, 7, 1633-1643.
11. Theberge, A. B., Courtois, F., Schaerli, Y., Fischlechner, M., Abell, C., Hollfelder, F., Huck, W. T. S., Angew. Chem. - Int. Edit. 2010, 49, 5846-5868.
12. Varghese, S. S., Zhu, Y. G., Davis, T. J., Trowell, S. C., Lab Chip 2009, 10, 1355-1364.
13. Wang, T.-H., Puleo, C. M., Yeh, H.-C., Integr. Biochips DNA Anal. 2007, 139-150.
14. Witek, M. A., Hupert, M. L., Soper, S. A., Bio-MEMS 2007, 391-441.
15. Zhang, C., Xing, D., Chem. Rev. 2010, 110, 4910-4947.
16. Erickson, D., Serey, X., Chen, Y. F., Mandal, S., Lab Chip 2011, 11, 995-1009.
17. Yu, T. A., Martinez, M. M., Pappas, D., Appl. Spec. 2011, 65, 115A-124A.
18. Yin, Y., Qiu, T., Zhang, W. J., Chu, P. K., J. Mater. Res. 2011, 26, 170-185.
19. Harrison, D. J., Fluri, K., Seiler, K., Fan, Z. H., Effenhauser, C. S., Manz, A., Science 1993, 261, 895-897.
20. Harrison, D. J., Manz, A., Fan, Z. H., Ludi, H., Widmer, H. M., Anal. Chem. 1992, 64, 1926-1932.
21. Axelrod, D., in: Correia, J. J., Detrich, H. W. (Eds.), Biophysical Tools for Biologists, Volume Two: In Vivo Techniques, Academic Press, Boston, MA 2008, pp. 169-221.
22. Xu, X. H., Yeung, E. S., Science 1997, 275, 1106-1109.
23. Xu, X. H. N., Yeung, E. S., Science 1998, 281, 1650-1653.
24. Kang, S. H., Shortreed, M. R., Yeung, E. S., Anal. Chem. 2001, 73, 1091-1099.
25. Kang, S. H., Yeung, E. S., Anal. Chem. 2002, 74, 6334-6339.
26. He, Y., Li, H. W., Yeung, E. S., J. Phys. Chem. B 2005, 109, 8820-8832.
27. Fang, N., Zhang, H., Li, J. W., Li, H. W., Yeung, E. S., Anal. Chem. 2007, 79, 6047-6054.
28. Graneli, A., Yeykal, C. C., Prasad, T. K., Greene, E. C., Langmuir 2006, 22, 292-299.
29. Gorman, J., Fazio, T., Wang, F., Wind, S., Greene, E. C., Langmuir 2010, 26, 1372-1379.
30. Isailovic, S., Li, H. W., Yeung, E. S., J. Chromatogr. A 2007, 1150, 259-266.
31. Le, N. C. H., Yokokawa, R., Dao, D. V., Nguyen, T. D., Wells, J. C., Sugiyama, S., Lab Chip 2009, 9, 244-250.
32. Wang, B., Ho, J., Fei, J. Y., Gonzalez, R. L., Lin, Q. A., Lab Chip 2011, 11, 274-281.
33. Luo, Y., Sun, W., Liu, C., Wang, G. F., Fang, N., Anal. Chem. 2011, 83, 5073-5077.
34. Konopka, C. A., Bednarek, S. Y., Plant J. 2008, 53, 186-196.
35. Zhang, K., Osakada, Y., Vrljic, M., Chen, L., Mudrakola, H. V., Cui, B., Lab Chip 2010, 10, 2566-2573.
36. Varghese, S. S., Zhu, Y. G., Davis, T. J., Trowell, S. C., Lab Chip 2009, 10, 1355-1364.
37. Gambin, Y., VanDelinder, V., Ferreon, A. C. M., Lemke, E. A., Groisman, A., Deniz, A. A., Nat. Methods 2011, 8, 239-U277.
38. Lemke, E. A., Gambin, Y., Vandelinder, V., Brustad, E. M., Liu, H.-W., Schultz, P. G., Groisman, A., Deniz, A. A., J. Am. Chem. Soc. 2009, 131, 13610-13612.
39. Di Fiori, N., Meller, A., J. Vis. Exp. 2009, e1542.
40. Liu, K. J., Wang, T.-H., Biophys. J. 2008, 95, 2964-2975.
41. Liu, K. J., Brock, M. V., Shih, I.-M., Wang, T.-H., J. Am. Chem. Soc. 2010, 132, 5793-5798.
42. Krogmeier, J. R., Schaefer, I., Seward, G., Yantz, G. R., Larson, J. W., Lab Chip 2007, 7, 1767-1774.
43. Emory, J. M., Soper, S. A., Anal. Chem. 2008, 80, 3897-3903.
44. Mutch, S. A., Fujimoto, B. S., Kuyper, C. L., Kuo, J. S., Bajjalieh, S. M., Chiu, D. T., Biophys. J. 2007, 92, 2926-2943.
45. Melin, J., Jarvius, J., Goeransson, J., Nilsson, M., Anal. Biochem. 2007, 368, 230-238.
46. Zhang, C.-Y., Yang, K., Anal. Bioanal. Chem. 2010, 397, 703-708.
47. Agrawal, A., Zhang, C., Byassee, T., Tripp, R. A., Nie, S., Anal. Chem. 2006, 78, 1061-1070.
48. Wilson, R., Bowden, S. A., Parnell, J., Cooper, J. M., Anal. Chem. 2010, 82, 2119-2123.
49. Kim, S., Huang, B., Zare, R. N., Lab Chip 2007, 7, 1663-1665.
50. Kim, S., Streets, A. M., Lin, R. R., Quake, S. R., Weiss, S., Majumdar, D. S., Nat. Methods 2011, 8, 242-283.
51. Puleo, C. M., Wang, T.-H., Lab Chip 2009, 9, 1065-1072.
52. Puleo, C. M., Yeh, H. C., Liu, K. J., Rane, T., Wang, T. H., 21st IEEE International Conference on Micro Electro Mechanical Systems, Technical Digest, 2008, 1, 200-203.
53. de Mello, A. J., Edel, J. B., J. Appl. Phys. 2007, 101, 084903.
54. Schmidt, B. S., Yang, A. H. J., Erickson, D., Lipson, M., Opt. Express 2007, 15, 14322-14334.
55. Yang, A. H. J., Moore, S. D., Schmidt, B. S., Klug, M., Lipson, M., Erickson, D., Nature 2009, 457, 71-75.
56. Cohen, A. E., Moerner, W. E., Opt. Express 2008, 16, 6941-6956.
57. Kumemura, M., Collard, D., Yamahata, C., Sakaki, N., Hashiguchi, G., Fujita, H., ChemPhysChem 2007, 8, 1875-1880.
58. Dylla-Spears, R., Townsend, J. E., Jen-Jacobson, L., Sohn, L. L., Muller, S. J., Lab Chip 2010, 10, 1543-1549.
59. Xu, W. L., Muller, S. J., Lab Chip 2011, 11, 435-442.
60. Brewer, L. R., Integr. Biol. 2011, 3, 540-547.
61. Jung, S.-Y., Liu, Y., Collier, C. P., Langmuir 2008, 24, 4439-4442.
62. Ridgeway, W. K., Seitaridou, E., Phillips, R., Williamson, J. R., Nucleic Acids Res. 2009, 37, e142.
63. Hamadani, K. M., Weiss, S., Proceedings of SPIE, 2008, 6862, 68620A.
64. Pfeil, S. H., Wickersham, C. E., Hoffmann, A., Lipman, E. A., Rev. Sci. Instrum. 2009, 80, 055105.
65. Lee, S. W., Yamamoto, T., Noji, H., Fujii, T., Enzyme Microb. Technol. 2006, 39, 519-525.
66. Okagbare, P. I., Soper, S. A., Analyst 2009, 134, 97-106.
67. Huang, B., Wu, H. K., Bhaya, D., Grossman, A., Granier, S., Kobilka, B. K., Zare, R. N., Science 2007, 315, 81-84.
68. Nakayama, T., Namura, M., Tabata, K. V., Noji, H., Yokokawa, R., Lab Chip 2009, 9, 3567-3573.
69. Lam, L., Sakakihara, S., Ishizuka, K., Takeuchi, S., Noji, H., Lab Chip 2007, 7, 1738-1745.
70. Rasmussen, K. H., Marie, R., Lange, J. M., Svendsen, W. E., Kristensen, A., Mir, K. U., Lab Chip 2011, 11, 1431-1433.
71. de Mello, A. J., Lab Chip 2003, 3, 29N-34N.
72. Barnes, M. D., Lermer, N., Kung, C. K., Whitten, W. B., Ramsey, J. M., Hill, S. C., Opt. Lett. 1997, 22, 1265-1267.
73. Barnes, M. D., Ng, K. C., Whitten, W. B., Ramsey, J. M., Anal. Chem. 1993, 65, 2360-2365.
74. Srisa-Art, M., de Mello, A. J., Edel, J. B., Chem. Commun. 2009, 6548-6550.
75. Rane, T. D., Puleo, C. M., Liu, K. J., Zhang, Y., Lee, A. P., Wang, T. H., Lab Chip 2010, 10, 161-164.
76. Courtois, F., Olguin, L. F., Whyte, G., Bratton, D., Huck, W. T. S., Abell, C., Hollfelder, F., ChemBioChem 2008, 9, 439-446.
77. Beer, N. R., Rose, K. A., Kennedy, I. M., Lab Chip 2009, 9, 841-844.
78. Srisa-Art, M., de Mello, A. J., Edel, J. B., J. Phys. Chem. B 2010, 114, 15766-15772.
79. Hsieh, S.-F., Wei, H.-H., Phys. Rev. E 2009, 79, 021901.
80. Mannion, J. T., Craighead, H. G., Biopolymers 2007, 85, 131-143.
81. Liang, X. G., Morton, K. J., Austin, R. H., Chou, S. Y., Nano Lett. 2007, 7, 3774-3780.
82. Kuo, C.-W., Wei, K. H., Lin, C.-H., Shiu, J.-Y., Chen, P., Electrophoresis 2008, 29, 2931-2938.
83. Park, S.-m., Huh, Y. S., Szeto, K., Joe, D. J., Kameoka, J., Coates, G. W., Edel, J. B., Erickson, D., Craighead, H. G., Small 2010, 6, 2420-2426.
84. Strychalski, E. A., Stavis, S. M., Craighead, H. G., Nanotechnology 2008, 19, 315301.
85. Utko, P., Persson, F., Kristensen, A., Larsen, N. B., Lab Chip 2011, 11, 303-308.
86. Tegenfeldt, J. O., Prinz, C., Cao, H., Chou, S., Reisner, W. W., Riehn, R., Wang, Y. M., Cox, E. C., Sturm, J. C., Silberzan, P., Austin, R. H., Proc. Natl. Acad. Sci. USA 2004, 101, 10979-10983.
87. Mannion, J. T., Reccius, C. H., Cross, J. D., Craighead, H. G., Biophys. J. 2006, 90, 4538-4545.
88. Levy, S. L., Mannion, J. T., Cheng, J., Reccius, C. H., Craighead, H. G., Nano Lett. 2008, 8, 3839-3844.
89. Reisner, W., Beech, J. P., Larsen, N. B., Flyvbjerg, H., Kristensen, A., Tegenfeldt, J. O., Phys. Rev. Lett. 2007, 99, 058302.
90. Zhang, C., Zhang, F., van Kan, J. A., van der Maarel, J. R. C., J. Chem. Phys. 2008, 128, 225109.
91. Balducci, A. G., Tang, J., Doyle, P. S., Macromolecules 2008, 41, 9914-9918.
92. Reisner, W., Larsen, N. B., Flyvbjerg, H., Tegenfeldt, J. O., Kristensen, A., Proc. Natl. Acad. Sci. USA 2009, 106, 79-84.
93. Cipriany, B. R., Zhao, R., Murphy, P. J., Levy, S. L., Tan, C. P., Craighead, H. G., Soloway, P. D., Anal. Chem. 2010, 82, 2480-2487.
94. Reisner, W., Larsen, N. B., Silahtaroglu, A., Kristensen, A., Tommerup, N., Tegenfeldt, J. O., Flyvbjerg, H., Proc. Natl. Acad. Sci. USA 2010, 107, 13294-13299.
95. Yamamoto, T., Fujii, T., Nanotechnology 2010, 21, 395502.
96. Shiu, J.-Y., Whang, W.-T., Chen, P., J. Chromatogr. A 2008, 1206, 72-76.
97. Suzuki, H., Tabata, K. V., Noji, H., Takeuchi, S., Langmuir 2006, 22, 1937-1942.
98. Suzuki, H., Tabata, K. V., Noji, H., Takeuchi, S., Biosensors Bioelectronics 2007, 22, 1111-1115.
99. Hromada, L. P., Nablo, B. J., Kasianowicz, J. J., Gaitan, M. A., DeVoe, D. L., Lab Chip 2008, 8, 602-608.
100. Osaki, T., Suzuki, H., Le Pioufle, B., Takeuchi, S., Anal. Chem. 2009, 81, 9866-9870.
101. van Mameren, J., Peterman, E. J. G., Wuite, G. J. L., Nucleic Acids Res. 2008, 36, 4381-4389.
102. Petit, C. A. P., Carbeck, J. D., Nano Lett. 2003, 3, 1141-1146.
103. Dukkipati, V. R., Kim, J. H., Pang, S. W., Larson, R. G., Nano Lett. 2006, 6, 2499-2504.
104. Vasdekis, A. E., O'Neil, C. P., Hubbell, J. A., Psaltis, D., Biomacromolecules 2010, 11, 827-831.
105. Jo, K., Chen, Y.-L., de Pablo, J. J., Schwartz, D. C., Lab Chip 2009, 9, 2348-2355.
106. Larson, J. W., Yantz, G. R., Zhong, Q., Charnas, R., D'Antoni, C. M., Gallo, M. V., Gillis, K. A., Neely, L. A., Phillips, K. M., Wong, G. G., Gullans, S. R., Gilmanshin, R., Lab Chip 2006, 6, 1187-1199.
107. Meltzer, R. H., Krogmeier, J. R., Kwok, L. W., Allen, R., Crane, B., Griffis, J. W., Knaian, L., Kojanian, N., Malkin, G., Nahas, M. K., Papkov, V., Shaikh, S., Vyavahare, K., Zhong, Q., Zhou, Y., Larson, J. W., Gilmanshin, R., Lab Chip 2011, 11, 863-873.
108. Hu, X., Wang, S., Lee, L. J., Phys. Rev. E 2009, 79, 041911.
109. Cardozo, B. L., Pang, S. W., J. Vacuum Sci. Technol. B: Microelectronics Nanometer Struc. - Process., Measur. Phenomena 2008, 26, 2578-2582.
110. Chiesl, T. N., Forster, R. E., Root, B. E., Larkin, M., Barron, A. E., Anal. Chem. 2007, 79, 7740-7747.
111. Randall, G. C., Schultz, K. M., Doyle, P. S., Lab Chip 2006, 6, 516-525.
112. Eid, J., Fehr, A., Gray, J., Luong, K., Lyle, J., Otto, G., Peluso, P., Rank, D., Baybayan, P., Bettman, B., Bibillo, A., Bjornson, K., Chaudhuri, B., Christians, F., Cicero, R., Clark, S., Dalal, R., Dewinter, A., Dixon, J., Foquet, M., Gaertner, A., Hardenbol, P., Heiner, C., Hester, K., Holden, D., Kearns, G., Kong, X. X., Kuse, R., Lacroix, Y., Lin, S., Lundquist, P., Ma, C. C., Marks, P., Maxham, M., Murphy, D., Park, I., Pham, T., Phillips, M., Roy, J., Sebra, R., Shen, G., Sorenson, J., Tomaney, A., Travers, K., Trulson, M., Vieceli, J., Wegener, J., Wu, D., Yang, A., Zaccarin, D., Zhao, P., Zhong, F., Korlach, J., Turner, S., Science 2009, 323, 133-138.
113. Bashford, G., Lamb, D., Grone, D., Eckles, B., Kornelsen, K., Middendorf, L., Williams, J., Opt. Express 2008, 16, 3445-3455.
114. Chan, E. Y., Goncalves, N. M., Haeusler, R. A., Hatch, A. J., Larson, J. W., Maletta, A. M., Yantz, G. R., Carstea, E. D., Fuchs, M., Wong, G. G., Gullans, S. R., Gilmanshin, R., Genome Res. 2004, 14, 1137-1146.
115. Zohar, H., Hetherington, C. L., Bustamante, C., Muller, S. J., Nano Lett. 2010, 10, 4697-4701.
116. Protozanova, E., Zhang, M., White, E. J., Mollova, E. T., Ten Broeck, D., Fridrikh, S. V., Cameron, D. B., Gilmanshin, R., Anal. Biochem. 2010, 402, 83-90.
117. Qu, X. H., Smith, G. J., Lee, K. T., Sosnick, T. R., Pan, T., Scherer, N. F., Proc. Natl. Acad. Sci. USA 2008, 105, 6602-6607.
118. Hofmann, H., Hillger, F., Pfeil, S. H., Hoffmann, A., Streich, D., Haenni, D., Nettels, D., Lipman, E. A., Schuler, B., Proc. Natl. Acad. Sci. USA 2010, 107, 11793-11798.
119. Hoffmann, A., Kane, A., Nettls, D., Hertzog, D. E., Baumgartel, P., Lengefeld, J., Reichardt, G., Horsley, D. A., Seckler, R., Bakajin, O., Schuler, B., Proc. Natl. Acad. Sci. USA 2007, 104, 105-110.
120. Chou, C.-K., Jing, N., Yamaguchi, H., Tsou, P.-H., Lee, H.-H., Chen, C.-T., Wang, Y.-N., Hong, S., Su, C., Kameoka, J., Hung, M.-C., Lab Chip 2010, 10, 1793-1798.
121. van Mameren, J., Modesti, M., Kanaar, R., Wyman, C., Peterman, E. J. G., Wuite, G. J. L., Nature 2009, 457, 745-748.
122. Arakawa, T., Sameshima, T., Sato, Y., Ueno, T., Shirasaki, Y., Funatsu, T., Shoji, S., Sensors Actuators, B: Chem. 2007, B128, 218-225.
123. Soto, C. M., Martin, B. D., Sapsford, K. E., Blum, A. S., Ratna, B. R., Anal. Chem. 2008, 80, 5433-5440.
124. Nalefski, E. A., D'Antoni, C. M., Ferrell, E. P., Lloyd, J. A., Qiu, H., Harris, J. L., Whitney, D. H., Clin. Chem. 2006, 52, 2172-2175.
125. Cai, L., Friedman, N., Xie, X. S., Nature 2006, 440, 358-362.
126. Huang, B., Wu, H., Bhaya, D., Grossman, A., Granier, S., Kobilka, B. K., Zare, R. N., Science 2007, 315, 81-84.
127. Liu, K., Tian, Y., Burrows, S. M., Reif, R. D., Pappas, D., Anal. Chim. Acta 2009, 651, 85-90.
128. Liao, D., Galajda, P., Riehn, R., Ilic, R., Puchalla, J. L., Yu, H. G., Craighead, H. G., Austin, R. H., Opt. Express 2008, 16, 10077-10090.
129. Schob, A., Pumpa, M., Selmke, M., Cichos, F., J. Phys. Chem. C 2010, 114, 4479-4485.
130. Schob, A., Cichos, F., J. Phys. Chem. B 2006, 110, 4354-4358.
131. Schob, A., Cichos, F., Chem. Phys. Lett. 2010, 484, 192-196.
132. Karstens, T., Kobs, K., J. Phys. Chem. 1980, 84, 1871-1872.
133. Wong, F. H. C., Banks, D. S., Abu-Arish, A., Fradin, C., J. Am. Chem. Soc. 2007, 129, 10302-10303.
134. Hell, S. W., Nat. Methods 2009, 6, 24-32.
135. Huang, B., Wang, W. Q., Bates, M., Zhuang, X. W., Science 2008, 319, 810-813.
136. Bates, M., Huang, B., Dempsey, G. T., Zhuang, X. W., Science 2007, 317, 1749-1753.
137. Rust, M. J., Bates, M., Zhuang, X. W., Nat. Methods 2006, 3, 793-795.
138. Betzig, E., Patterson, G. H., Sougrat, R., Lindwasser, O. W., Olenych, S., Bonifacino, J. S., Davidson, M. W., Lippincott-Schwartz, J., Hess, H. F., Science 2006, 313, 1642-1645.
139. Hess, S. T., Girirajan, T. P. K., Mason, M. D., Biophys. J. 2006, 91, 4258-4272.