-
1
-
-
78650306521
-
Small RNA sorting: matchmaking for Argonautes
-
Czech B, Hannon GJ, (2011) Small RNA sorting: matchmaking for Argonautes. Nat Rev Genet 12: 19-31.
-
(2011)
Nat Rev Genet
, vol.12
, pp. 19-31
-
-
Czech, B.1
Hannon, G.J.2
-
2
-
-
66649131084
-
Structural and functional modules in RNA interference
-
Nowotny M, Yang W, (2009) Structural and functional modules in RNA interference. Curr Opin Struct Biol 19: 286-293.
-
(2009)
Curr Opin Struct Biol
, vol.19
, pp. 286-293
-
-
Nowotny, M.1
Yang, W.2
-
3
-
-
58649113420
-
Enhancement of the seed-target recognition step in RNA silencing by a PIWI/MID domain protein
-
Parker JS, Parizotto EA, Wang M, Roe SM, Barford D, (2009) Enhancement of the seed-target recognition step in RNA silencing by a PIWI/MID domain protein. Mol Cell 33: 204-214.
-
(2009)
Mol Cell
, vol.33
, pp. 204-214
-
-
Parker, J.S.1
Parizotto, E.A.2
Wang, M.3
Roe, S.M.4
Barford, D.5
-
4
-
-
4644300157
-
A single Argonaute protein mediates both transcriptional and posttranscriptional silencing in Schizosaccharomyces pombe
-
Sigova A, Rhind N, Zamore PD, (2004) A single Argonaute protein mediates both transcriptional and posttranscriptional silencing in Schizosaccharomyces pombe. Genes Dev 18: 2359-2367.
-
(2004)
Genes Dev
, vol.18
, pp. 2359-2367
-
-
Sigova, A.1
Rhind, N.2
Zamore, P.D.3
-
5
-
-
0037076320
-
ARGONAUTE1 is required for efficient RNA interference in Drosophila embryos
-
Williams RW, Rubin GM, (2002) ARGONAUTE1 is required for efficient RNA interference in Drosophila embryos. Proc Natl Acad Sci U S A 99: 6889-6894.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 6889-6894
-
-
Williams, R.W.1
Rubin, G.M.2
-
6
-
-
33750824034
-
Analysis of the C. elegans Argonaute family reveals that distinct Argonautes act sequentially during RNAi
-
Yigit E, Batista PJ, Bei Y, Pang KM, Chen CC, et al. (2006) Analysis of the C. elegans Argonaute family reveals that distinct Argonautes act sequentially during RNAi. Cell 127: 747-757.
-
(2006)
Cell
, vol.127
, pp. 747-757
-
-
Yigit, E.1
Batista, P.J.2
Bei, Y.3
Pang, K.M.4
Chen, C.C.5
-
7
-
-
78149481868
-
The piRNA pathway: a fly's perspective on the guardian of the genome
-
Senti KA, Brennecke J, (2010) The piRNA pathway: a fly's perspective on the guardian of the genome. Trends Genet 26: 499-509.
-
(2010)
Trends Genet
, vol.26
, pp. 499-509
-
-
Senti, K.A.1
Brennecke, J.2
-
8
-
-
80055071064
-
Widespread expression of piRNA-like molecules in somatic tissues
-
doi:10.1093/nar/gkr298
-
Yan Z, Hu HY, Jiang X, Maierhofer V, Neb E, et al. (2011) Widespread expression of piRNA-like molecules in somatic tissues. Nucleic Acids Res doi:10.1093/nar/gkr298.
-
(2011)
Nucleic Acids Res
-
-
Yan, Z.1
Hu, H.Y.2
Jiang, X.3
Maierhofer, V.4
Neb, E.5
-
9
-
-
58449134534
-
Small silencing RNAs: an expanding universe
-
Ghildiyal M, Zamore PD, (2009) Small silencing RNAs: an expanding universe. Nat Rev Genet 10: 94-108.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 94-108
-
-
Ghildiyal, M.1
Zamore, P.D.2
-
10
-
-
0032443562
-
A novel class of evolutionarily conserved genes defined by piwi are essential for stem cell self-renewal
-
Cox DN, Chao A, Baker J, Chang L, Qiao D, et al. (1998) A novel class of evolutionarily conserved genes defined by piwi are essential for stem cell self-renewal. Genes Dev 12: 3715-3727.
-
(1998)
Genes Dev
, vol.12
, pp. 3715-3727
-
-
Cox, D.N.1
Chao, A.2
Baker, J.3
Chang, L.4
Qiao, D.5
-
11
-
-
70349641600
-
Abundant primary piRNAs, endo-siRNAs, and microRNAs in a Drosophila ovary cell line
-
Lau NC, Robine N, Martin R, Chung WJ, Niki Y, et al. (2009) Abundant primary piRNAs, endo-siRNAs, and microRNAs in a Drosophila ovary cell line. Genome Res 19: 1776-1785.
-
(2009)
Genome Res
, vol.19
, pp. 1776-1785
-
-
Lau, N.C.1
Robine, N.2
Martin, R.3
Chung, W.J.4
Niki, Y.5
-
12
-
-
70449519397
-
A regulatory circuit for piwi by the large Maf gene traffic jam in Drosophila
-
Saito K, Inagaki S, Mituyama T, Kawamura Y, Ono Y, et al. (2009) A regulatory circuit for piwi by the large Maf gene traffic jam in Drosophila. Nature 461: 1296-1299.
-
(2009)
Nature
, vol.461
, pp. 1296-1299
-
-
Saito, K.1
Inagaki, S.2
Mituyama, T.3
Kawamura, Y.4
Ono, Y.5
-
13
-
-
65549105694
-
Specialized piRNA pathways act in germline and somatic tissues of the Drosophila ovary
-
Malone CD, Brennecke J, Dus M, Stark A, McCombie WR, et al. (2009) Specialized piRNA pathways act in germline and somatic tissues of the Drosophila ovary. Cell 137: 522-535.
-
(2009)
Cell
, vol.137
, pp. 522-535
-
-
Malone, C.D.1
Brennecke, J.2
Dus, M.3
Stark, A.4
McCombie, W.R.5
-
14
-
-
33947273235
-
Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila
-
Brennecke J, Aravin AA, Stark A, Dus M, Kellis M, et al. (2007) Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila. Cell 128: 1089-1103.
-
(2007)
Cell
, vol.128
, pp. 1089-1103
-
-
Brennecke, J.1
Aravin, A.A.2
Stark, A.3
Dus, M.4
Kellis, M.5
-
15
-
-
77957793321
-
An in vivo RNAi assay identifies major genetic and cellular requirements for primary piRNA biogenesis in Drosophila
-
Olivieri D, Sykora MM, Sachidanandam R, Mechtler K, Brennecke J, (2010) An in vivo RNAi assay identifies major genetic and cellular requirements for primary piRNA biogenesis in Drosophila. EMBO J 29: 3301-3317.
-
(2010)
EMBO J
, vol.29
, pp. 3301-3317
-
-
Olivieri, D.1
Sykora, M.M.2
Sachidanandam, R.3
Mechtler, K.4
Brennecke, J.5
-
16
-
-
57149104113
-
An epigenetic role for maternally inherited piRNAs in transposon silencing
-
Brennecke J, Malone CD, Aravin AA, Sachidanandam R, Stark A, et al. (2008) An epigenetic role for maternally inherited piRNAs in transposon silencing. Science 322: 1387-1392.
-
(2008)
Science
, vol.322
, pp. 1387-1392
-
-
Brennecke, J.1
Malone, C.D.2
Aravin, A.A.3
Sachidanandam, R.4
Stark, A.5
-
17
-
-
78049387387
-
Maternal mRNA deadenylation and decay by the piRNA pathway in the early Drosophila embryo
-
Rouget C, Papin C, Boureux A, Meunier AC, Franco B, et al. (2010) Maternal mRNA deadenylation and decay by the piRNA pathway in the early Drosophila embryo. Nature 467: 1128-1132.
-
(2010)
Nature
, vol.467
, pp. 1128-1132
-
-
Rouget, C.1
Papin, C.2
Boureux, A.3
Meunier, A.C.4
Franco, B.5
-
18
-
-
54349089563
-
Zili is required for germ cell differentiation and meiosis in zebrafish
-
Houwing S, Berezikov E, Ketting RF, (2008) Zili is required for germ cell differentiation and meiosis in zebrafish. EMBO J 27: 2702-2711.
-
(2008)
EMBO J
, vol.27
, pp. 2702-2711
-
-
Houwing, S.1
Berezikov, E.2
Ketting, R.F.3
-
19
-
-
34047154356
-
A role for Piwi and piRNAs in germ cell maintenance and transposon silencing in Zebrafish
-
Houwing S, Kamminga LM, Berezikov E, Cronembold D, Girard A, et al. (2007) A role for Piwi and piRNAs in germ cell maintenance and transposon silencing in Zebrafish. Cell 129: 69-82.
-
(2007)
Cell
, vol.129
, pp. 69-82
-
-
Houwing, S.1
Kamminga, L.M.2
Berezikov, E.3
Cronembold, D.4
Girard, A.5
-
20
-
-
77951654900
-
Canonical TGF-beta signaling is required for the balance of excitatory/inhibitory transmission within the hippocampus and prepulse inhibition of acoustic startle
-
Sun M, Gewirtz JC, Bofenkamp L, Wickham RJ, Ge H, et al. (2010) Canonical TGF-beta signaling is required for the balance of excitatory/inhibitory transmission within the hippocampus and prepulse inhibition of acoustic startle. J Neurosci 30: 6025-6035.
-
(2010)
J Neurosci
, vol.30
, pp. 6025-6035
-
-
Sun, M.1
Gewirtz, J.C.2
Bofenkamp, L.3
Wickham, R.J.4
Ge, H.5
-
21
-
-
79955063217
-
Piwi-like 2 mediates fibroblast growth factor signaling during gastrulation of zebrafish embryo
-
Zhao J, Sun H, Deng W, Li D, Liu Y, et al. (2010) Piwi-like 2 mediates fibroblast growth factor signaling during gastrulation of zebrafish embryo. Tohoku J Exp Med 222: 63-68.
-
(2010)
Tohoku J Exp Med
, vol.222
, pp. 63-68
-
-
Zhao, J.1
Sun, H.2
Deng, W.3
Li, D.4
Liu, Y.5
-
22
-
-
77649141259
-
Genome sequence of the pea aphid Acyrthosiphon pisum
-
The International Aphid Genomics Consortium, doi:10.1371/journal.pbio.1000313
-
The International Aphid Genomics Consortium (2010) Genome sequence of the pea aphid Acyrthosiphon pisum. PLoS Biol 8: e1000313 doi:10.1371/journal.pbio.1000313.
-
(2010)
PLoS Biol
, vol.8
-
-
-
23
-
-
80052061148
-
Genomics of Environmentally Induced Phenotypes in 2 Extremely Plastic Arthropods
-
doi:10.1093/jhered/esr1020
-
Simon JC, Pfrender ME, Tollrian R, Tagu D, Colbourne JK, (2011) Genomics of Environmentally Induced Phenotypes in 2 Extremely Plastic Arthropods. J Hered doi:10.1093/jhered/esr1020.
-
(2011)
J Hered
-
-
Simon, J.C.1
Pfrender, M.E.2
Tollrian, R.3
Tagu, D.4
Colbourne, J.K.5
-
24
-
-
34047176010
-
Apvasa marks germ-cell migration in the parthenogenetic pea aphid Acyrthosiphon pisum (Hemiptera: Aphidoidea)
-
Chang C-C, Lin GW, Cook CE, Horng SB, Lee HJ, et al. (2007) Apvasa marks germ-cell migration in the parthenogenetic pea aphid Acyrthosiphon pisum (Hemiptera: Aphidoidea). Dev Genes Evol 217: 275-287.
-
(2007)
Dev Genes Evol
, vol.217
, pp. 275-287
-
-
Chang, C.-C.1
Lin, G.W.2
Cook, C.E.3
Horng, S.B.4
Lee, H.J.5
-
25
-
-
48749125125
-
Shifting from clonal to sexual reproduction in aphids: physiological and developmental aspects
-
Le Trionnaire G, Hardie J, Jaubert-Possamai S, Simon JC, Tagu D, (2008) Shifting from clonal to sexual reproduction in aphids: physiological and developmental aspects. Biol Cell 100: 441-451.
-
(2008)
Biol Cell
, vol.100
, pp. 441-451
-
-
Le Trionnaire, G.1
Hardie, J.2
Jaubert-Possamai, S.3
Simon, J.C.4
Tagu, D.5
-
26
-
-
53749084653
-
Comparative genomics of small RNA regulatory pathway components in vector mosquitoes
-
Campbell CL, Black WCt, Hess AM, Foy BD, (2008) Comparative genomics of small RNA regulatory pathway components in vector mosquitoes. BMC Genomics 9: 425.
-
(2008)
BMC Genomics
, vol.9
, pp. 425
-
-
Campbell, C.L.1
Black, W.C.2
Hess, A.M.3
Foy, B.D.4
-
27
-
-
65649130778
-
Meiosis genes in Daphnia pulex and the role of parthenogenesis in genome evolution
-
Schurko AM, Logsdon JM Jr, Eads BD, (2009) Meiosis genes in Daphnia pulex and the role of parthenogenesis in genome evolution. BMC Evol Biol 9: 78.
-
(2009)
BMC Evol Biol
, vol.9
, pp. 78
-
-
Schurko, A.M.1
Logsdon Jr., J.M.2
Eads, B.D.3
-
28
-
-
79960056273
-
Functional specialization of Piwi proteins in Paramecium tetraurelia from post-transcriptional gene silencing to genome remodelling
-
Bouhouche K, Gout JF, Kapusta A, Betermier M, Meyer E, (2011) Functional specialization of Piwi proteins in Paramecium tetraurelia from post-transcriptional gene silencing to genome remodelling. Nucleic Acids Res 10: 4249-4264.
-
(2011)
Nucleic Acids Res
, vol.10
, pp. 4249-4264
-
-
Bouhouche, K.1
Gout, J.F.2
Kapusta, A.3
Betermier, M.4
Meyer, E.5
-
29
-
-
69749100606
-
Sequence, biogenesis, and function of diverse small RNA classes bound to the Piwi family proteins of Tetrahymena thermophila
-
Couvillion MT, Lee SR, Hogstad B, Malone CD, Tonkin LA, et al. (2009) Sequence, biogenesis, and function of diverse small RNA classes bound to the Piwi family proteins of Tetrahymena thermophila. Genes Dev 23: 2016-2032.
-
(2009)
Genes Dev
, vol.23
, pp. 2016-2032
-
-
Couvillion, M.T.1
Lee, S.R.2
Hogstad, B.3
Malone, C.D.4
Tonkin, L.A.5
-
30
-
-
78650190427
-
A growth-essential Tetrahymena Piwi protein carries tRNA fragment cargo
-
Couvillion MT, Sachidanandam R, Collins K, (2010) A growth-essential Tetrahymena Piwi protein carries tRNA fragment cargo. Genes Dev 24: 2742-2747.
-
(2010)
Genes Dev
, vol.24
, pp. 2742-2747
-
-
Couvillion, M.T.1
Sachidanandam, R.2
Collins, K.3
-
31
-
-
79551640033
-
Form, function, and regulation of ARGONAUTE proteins
-
Mallory A, Vaucheret H, (2010) Form, function, and regulation of ARGONAUTE proteins. Plant Cell 22: 3879-3889.
-
(2010)
Plant Cell
, vol.22
, pp. 3879-3889
-
-
Mallory, A.1
Vaucheret, H.2
-
32
-
-
52049098967
-
A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice
-
Aravin AA, Sachidanandam R, Bourc'his D, Schaefer C, Pezic D, et al. (2008) A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice. Mol Cell 31: 785-799.
-
(2008)
Mol Cell
, vol.31
, pp. 785-799
-
-
Aravin, A.A.1
Sachidanandam, R.2
Bourc'his, D.3
Schaefer, C.4
Pezic, D.5
-
33
-
-
58249116116
-
Two Piwi proteins, Xiwi and Xili, are expressed in the Xenopus female germline
-
Wilczynska A, Minshall N, Armisen J, Miska EA, Standart N, (2009) Two Piwi proteins, Xiwi and Xili, are expressed in the Xenopus female germline. RNA 15: 337-345.
-
(2009)
RNA
, vol.15
, pp. 337-345
-
-
Wilczynska, A.1
Minshall, N.2
Armisen, J.3
Miska, E.A.4
Standart, N.5
-
34
-
-
77954240831
-
Anterior development in the parthenogenetic and viviparous form of the pea aphid, Acyrthosiphon pisum: hunchback and orthodenticle expression
-
Huang TY, Cook CE, Davis GK, Shigenobu S, Chen RP, et al. (2010) Anterior development in the parthenogenetic and viviparous form of the pea aphid, Acyrthosiphon pisum: hunchback and orthodenticle expression. Insect Mol Biol Suppl 2: 75-85.
-
(2010)
Insect Mol Biol Suppl
, vol.2
, pp. 75-85
-
-
Huang, T.Y.1
Cook, C.E.2
Davis, G.K.3
Shigenobu, S.4
Chen, R.P.5
-
35
-
-
0033966406
-
piwi encodes a nucleoplasmic factor whose activity modulates the number and division rate of germline stem cells
-
Cox DN, Chao A, Lin H, (2000) piwi encodes a nucleoplasmic factor whose activity modulates the number and division rate of germline stem cells. Development 127: 503-514.
-
(2000)
Development
, vol.127
, pp. 503-514
-
-
Cox, D.N.1
Chao, A.2
Lin, H.3
-
36
-
-
0022353134
-
Morphology, ultrastructure, and germ cell cluster formation in ovarioles of aphids
-
Büning J, (1985) Morphology, ultrastructure, and germ cell cluster formation in ovarioles of aphids. J Morphol 186: 209-221.
-
(1985)
J Morphol
, vol.186
, pp. 209-221
-
-
Büning, J.1
-
37
-
-
77951578156
-
Expansion of the miRNA pathway in the hemipteran insect Acyrthosiphon pisum
-
Jaubert-Possamai S, Rispe C, Tanguy S, Gordon K, Walsh T, et al. (2010) Expansion of the miRNA pathway in the hemipteran insect Acyrthosiphon pisum. Mol Biol Evol 27: 979-987.
-
(2010)
Mol Biol Evol
, vol.27
, pp. 979-987
-
-
Jaubert-Possamai, S.1
Rispe, C.2
Tanguy, S.3
Gordon, K.4
Walsh, T.5
-
38
-
-
33749257862
-
The role of PIWI and the miRNA machinery in Drosophila germline determination
-
Megosh HB, Cox DN, Campbell C, Lin H, (2006) The role of PIWI and the miRNA machinery in Drosophila germline determination. Curr Biol 16: 1884-1894.
-
(2006)
Curr Biol
, vol.16
, pp. 1884-1894
-
-
Megosh, H.B.1
Cox, D.N.2
Campbell, C.3
Lin, H.4
-
39
-
-
34548215055
-
Seasonal photoperiodism regulates the expression of cuticular and signalling protein genes in the pea aphid
-
Le Trionnaire G, Jaubert S, Sabater-Munoz B, Benedetto A, Bonhomme J, et al. (2007) Seasonal photoperiodism regulates the expression of cuticular and signalling protein genes in the pea aphid. Insect Biochem Mol Biol 37: 1094-1102.
-
(2007)
Insect Biochem Mol Biol
, vol.37
, pp. 1094-1102
-
-
Le Trionnaire, G.1
Jaubert, S.2
Sabater-Munoz, B.3
Benedetto, A.4
Bonhomme, J.5
-
40
-
-
52449119831
-
Whole-mount identification of gene transcripts in aphids: protocols and evaluation of probe accessibility
-
Chang C-C, Huang TY, Shih CL, Lin GW, Chang TP, et al. (2008) Whole-mount identification of gene transcripts in aphids: protocols and evaluation of probe accessibility. Arch Insect Biochem Physiol 68: 186-196.
-
(2008)
Arch Insect Biochem Physiol
, vol.68
, pp. 186-196
-
-
Chang, C.-C.1
Huang, T.Y.2
Shih, C.L.3
Lin, G.W.4
Chang, T.P.5
-
41
-
-
38549146894
-
The Pfam protein families database
-
Finn RD, Tate J, Mistry J, Coggill PC, Sammut SJ, et al. (2008) The Pfam protein families database. Nucleic Acids Res 36: D281-288.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Finn, R.D.1
Tate, J.2
Mistry, J.3
Coggill, P.C.4
Sammut, S.J.5
-
42
-
-
58149203231
-
InterPro: the integrative protein signature database
-
Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, et al. (2009) InterPro: the integrative protein signature database. Nucleic Acids Res 37: D211-215.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Hunter, S.1
Apweiler, R.2
Attwood, T.K.3
Bairoch, A.4
Bateman, A.5
-
43
-
-
0034623005
-
T-Coffee: A novel method for fast and accurate multiple sequence alignment
-
Notredame C, Higgins DG, Heringa J, (2000) T-Coffee: A novel method for fast and accurate multiple sequence alignment. J Mol Biol 302: 205-217.
-
(2000)
J Mol Biol
, vol.302
, pp. 205-217
-
-
Notredame, C.1
Higgins, D.G.2
Heringa, J.3
-
44
-
-
34547781750
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
-
Tamura K, Dudley J, Nei M, Kumar S, (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
45
-
-
17244373103
-
Transcriptome analysis of the aphid bacteriocyte, the symbiotic host cell that harbors an endocellular mutualistic bacterium, Buchnera
-
Nakabachi A, Shigenobu S, Sakazume N, Shiraki T, Hayashizaki Y, et al. (2005) Transcriptome analysis of the aphid bacteriocyte, the symbiotic host cell that harbors an endocellular mutualistic bacterium, Buchnera. Proc Natl Acad Sci U S A 102: 5477-5482.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 5477-5482
-
-
Nakabachi, A.1
Shigenobu, S.2
Sakazume, N.3
Shiraki, T.4
Hayashizaki, Y.5
-
46
-
-
0038777376
-
A comparison of parthenogenetic and sexual embryogenesis of the pea aphid Acyrthosiphon pisum (Hemiptera: Aphidoidea)
-
Miura T, Braendle C, Shingleton A, Sisk G, Kambhampati S, et al. (2003) A comparison of parthenogenetic and sexual embryogenesis of the pea aphid Acyrthosiphon pisum (Hemiptera: Aphidoidea). J Exp Zool B Mol Dev Evol 295: 59-81.
-
(2003)
J Exp Zool B Mol Dev Evol
, vol.295
, pp. 59-81
-
-
Miura, T.1
Braendle, C.2
Shingleton, A.3
Sisk, G.4
Kambhampati, S.5
-
47
-
-
15844371219
-
Structural basis for 5′-end-specific recognition of guide RNA by the A. fulgidus Piwi protein
-
Ma JB, Yuan YR, Meister G, Pei Y, Tuschl T, et al. (2005) Structural basis for 5′-end-specific recognition of guide RNA by the A. fulgidus Piwi protein. Nature 434: 666.
-
(2005)
Nature
, vol.434
, pp. 666
-
-
Ma, J.B.1
Yuan, Y.R.2
Meister, G.3
Pei, Y.4
Tuschl, T.5
|