Comparative analysis of human and bovine protein kinases reveals unique relationship and functional diversity

Genetics and Molecular Biology

Volumn 34, Issue 4, 2011, Pages 587-591

  Kabir, Nuzhat N ^a   Kazi, Julhash U ^a,b  

^a KN Biomedical Research Institute   (Bangladesh)

^b Opsonin Pharma Limited   (Bangladesh)

Author keywords

aPK; Bovine; ePK; Kinome

Indexed keywords

CASEIN KINASE I; FIBROBLAST GROWTH FACTOR RECEPTOR; G PROTEIN COUPLED RECEPTOR KINASE; MITOGEN ACTIVATED PROTEIN KINASE; MIXED LINEAGE KINASE; PROTEIN KINASE; PROTEIN KINASE C; PROTEIN TYROSINE KINASE; RAF PROTEIN; VASCULOTROPIN RECEPTOR;

AMINO ACID ANALYSIS; ARTICLE; BIOINFORMATICS; CONTROLLED STUDY; COW; ENZYME ACTIVE SITE; ENZYME ACTIVITY; ENZYME ASSAY; GENE SEQUENCE; GENETIC DATABASE; GENOME ANALYSIS; HUMAN VERSUS ANIMAL COMPARISON; NONHUMAN; SPECIES COMPARISON; STRUCTURE ACTIVITY RELATION; STRUCTURE ANALYSIS;

EID: 82355164475     PISSN: 14154757     EISSN: 16784685     Source Type: Journal    
DOI: 10.1590/S1415-47572011005000035     Document Type: Article

References (20)

1. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W and LipmanDJ (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res 25:3389-3402.
2. Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J and Sayers EW (2010) GenBank. Nucleic Acids Res 38:D46-51.
3. Brognard J and Hunter T (2011) Protein kinase signaling networks in cancer. Curr Opin Genet Dev 21:4-11.
4. Caenepeel S, Charydczak G, Sudarsanam S, Hunter T and Manning G (2004) The mouse kinome: Discovery and comparative genomics of all mouse protein kinases. Proc Natl Acad Sci USA 101:11707-11712.
5. Citri A, Skaria KB and Yarden Y (2003) The deaf and the dumb: The biologyof ErbB-2 and ErbB-3. Exp Cell Res 284:54-65.
6. Eddy SR (1998) Profile hidden Markov models. Bioinformatics 14:755-763.
7. Finn RD, Mistry J, Tate J, Coggill P, Heger A, Pollington JE, Gavin OL, Gunasekaran P, Ceric G, Forslund K, et al. (2010) The Pfam protein families database. Nucleic Acids Res 38:D211-222.
8. Hanks SK and Hunter T (1995) Protein kinases 6. The eukaryotic protein kinase superfamily: Kinase (catalytic) domain structure and classification. FASEB J 9:576-596.
9. Hanks SK, Quinn AM and Hunter T (1988) The protein kinase family: Conserved features and deduced phylogeny of the catalytic domains. Science 241:42-52.
10. Hubbard TJ, Aken BL, Ayling S, Ballester B, Beal K, Bragin E, Brent S, Chen Y, Clapham P, Clarke L, et al. (2009) Ensembl 2009. Nucleic Acids Res 37:D690-697.
11. Hunter T (1987) A thousand and one protein kinases. Cell 50:823-829.
12. Kazi JU, Kabir NN and Soh JW (2008) Bioinformatic prediction and analysis of eukaryotic protein kinases in the rat genome. Gene 410:147-153.
13. Lu G and Moriyama EN (2004) Vector NTI, a balanced all-in-one sequence analysis suite. Brief Bioinform 5:378-388.
14. Maglott D, Ostell J, Pruitt KD and Tatusova T (2005) Entrez gene: Gene-centered information at NCBI. Nucleic Acids Res 33:D54-58.
15. Manning G, Plowman GD, Hunter T and Sudarsanam S (2002a) Evolution of protein kinase signaling from yeast to man. Trends Biochem Sci 27:514-520.
16. Manning G, Whyte DB, Martinez R, Hunter T and Sudarsanam S (2002b) The protein kinase complement of the human genome. Science 298:1912-1934.
17. Salerno M, Palmieri D, Bouadis A, Halverson D and Steeg PS (2005) Nm23-H1 metastasis suppressor expression level influences the binding properties, stability, and function of the kinase suppressor of Ras1 (KSR1) Erk scaffold in breast carcinoma cells. Mol Cell Biol 25:1379-1388.
18. Schmidt WM, Kraus C, Hoger H, Hochmeister S, Oberndorfer F, Branka M, Bingemann S, Lassmann H, Muller M, Macedo-Souza LI, et al. (2007) Mutation in the Scyl1 gene encoding amino-terminal kinase-like protein causes a recessive form of spinocerebellar neurodegeneration. EMBO Rep 8:691-697.
19. Sergina NV, Rausch M, Wang D, Blair J, Hann B, Shokat KM and Moasser MM (2007) Escape from HER-family tyrosine ki-nase inhibitor therapy by the kinase-inactive HER3. Nature 445:437-441.
20. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F and Higgins DG (1997) The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882.