메뉴 건너뛰기




Volumn 29, Issue 2, 2012, Pages 771-786

De novo assembly of the Manila clam Ruditapes philippinarum transcriptome provides new insights into expression bias, mitochondrial doubly uniparental inheritance and sex determination

Author keywords

de novo; doubly uniparental inheritance; Ruditapes philippinarum; sex bias; sex determination; transcriptome

Indexed keywords

TRANSCRIPTOME;

EID: 82255185701     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msr248     Document Type: Article
Times cited : (98)

References (86)
  • 3
  • 4
    • 25444460232 scopus 로고    scopus 로고
    • Dimerization of doublesex is mediated by a cryptic ubiquitin-associated domain fold: Implications for sex-specific gene regulation
    • DOI 10.1074/jbc.M507990200
    • Bayrer JR, Zhang W, Weiss MA. 2005. Dimerization of doublesex is mediated by a cryptic ubiquitin-associated domain fold: implications for sex-specific gene regulation. J Biol Chem. 280:32989-32996. (Pubitemid 41368348)
    • (2005) Journal of Biological Chemistry , vol.280 , Issue.38 , pp. 32989-32996
    • Bayrer, J.R.1    Zhang, W.2    Weiss, M.A.3
  • 5
    • 3142665525 scopus 로고    scopus 로고
    • GOstat: Find statistically overrepresented Gene Ontologies with a group of genes
    • DOI 10.1093/bioinformatics/bth088
    • Beissbarth T, Speed TP. 2004. GOstat: find statistically overrepresented Gene Ontologies within a group of genes. Bioinformatics 20:1464-1465. (Pubitemid 38931420)
    • (2004) Bioinformatics , vol.20 , Issue.9 , pp. 1464-1465
    • Beissbarth, T.1    Speed, T.P.2
  • 6
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y. 1995. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Series B Stat Methodol. 57:289-300.
    • (1995) J R Stat Soc Series B Stat Methodol. , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 7
    • 38249017790 scopus 로고
    • Karyological and allozymic characterization of Ruditapes philippinarum, R. aureus and R. decussatus (Bivalvia, Veneridae)
    • Borsa P, Thiriot-Quiévreux C. 1990. Karyological and allozymic characterization of Ruditapes philippinarum, R. aureus and R. decussatus (Bivalvia, Veneridae). Aquaculture 90:209-227.
    • (1990) Aquaculture , vol.90 , pp. 209-227
    • Borsa, P.1    Thiriot-Quiévreux, C.2
  • 8
    • 37049028315 scopus 로고    scopus 로고
    • Characterization of reproduction-specific genes in a marine bivalve mollusc: Influence of maturation stage and sex on mRNA expression
    • DOI 10.1016/j.gene.2007.10.005, PII S0378111907005124
    • Boutet I, Moraga D, Marinovic L, Obreque J, Chavez-Crooker P. 2008. Characterization of reproduction-specific genes in a marine bivalve mollusc: influence of maturation stage and sex on mRNA expression. Gene 407:130-138. (Pubitemid 350251661)
    • (2008) Gene , vol.407 , Issue.1-2 , pp. 130-138
    • Boutet, I.1    Moraga, D.2    Marinovic, L.3    Obreque, J.4    Chavez-Crooker, P.5
  • 9
    • 34547870541 scopus 로고    scopus 로고
    • The unusual system of doubly uniparental inheritance of mtDNA: isn't one enough?
    • DOI 10.1016/j.tig.2007.05.011, PII S0168952507002429
    • Breton S, Beaupre HD, Stewart DT, Hoeh WR, Blier PU. 2007. The unusual system of doubly uniparental inheritance of mtDNA: isn't one enough? Trends Genet. 23:465-474. (Pubitemid 47259576)
    • (2007) Trends in Genetics , vol.23 , Issue.9 , pp. 465-474
    • Breton, S.1    Beaupre, H.D.2    Stewart, D.T.3    Hoeh, W.R.4    Blier, P.U.5
  • 10
    • 79955682606 scopus 로고    scopus 로고
    • Evidence for a fourteenth mtDNA-encoded protein in the female-transmitted mtDNA of marine mussels (Bivalvia: Mytilidae)
    • Breton S, Ghiselli F, Passamonti M, Milani L, Stewart DT, Hoeh WR. 2011. Evidence for a fourteenth mtDNA-encoded protein in the female-transmitted mtDNA of marine mussels (Bivalvia: Mytilidae). PLoS One 6:e19365.
    • (2011) PLoS One. , vol.6
    • Breton, S.1    Ghiselli, F.2    Passamonti, M.3    Milani, L.4    Stewart, D.T.5    Hoeh, W.R.6
  • 12
    • 1642414751 scopus 로고    scopus 로고
    • Differential Segregation Patterns of Sperm Mitochondria in Embryos of the Blue Mussel (Mytilus edulis)
    • DOI 10.1534/genetics.166.2.883
    • Cao L, Kenchington E, Zouros E. 2004. Differential segregation patterns of sperm mitochondria in embryos of the blue mussel (Mytilus edulis). Genetics 166:883-894. (Pubitemid 38391748)
    • (2004) Genetics , vol.166 , Issue.2 , pp. 883-894
    • Cao, L.1    Kenchington, E.2    Zouros, E.3
  • 13
    • 79960559081 scopus 로고    scopus 로고
    • Somatic sex-specific transcriptome differences in Drosophila revealed by whole transcriptome sequencing
    • Chang PL, Dunham JP, Nuzhdin SV, Arbeitman MN. 2011. Somatic sex-specific transcriptome differences in Drosophila revealed by whole transcriptome sequencing. BMC Genomics 12:364.
    • (2011) BMC Genomics. , vol.12 , pp. 364
    • Chang, P.L.1    Dunham, J.P.2    Nuzhdin, S.V.3    Arbeitman, M.N.4
  • 14
    • 34249804498 scopus 로고    scopus 로고
    • Using FlyAtlas to identify better Drosophila melanogaster models of human disease
    • DOI 10.1038/ng2049, PII NG2049
    • Chintapalli VR, Wang J, Dow JAT. 2007. Using FlyAtlas to identify better Drosophila melanogaster models of human disease. Nat Genet. 39:715-720. (Pubitemid 46848596)
    • (2007) Nature Genetics , vol.39 , Issue.6 , pp. 715-720
    • Chintapalli, V.R.1    Wang, J.2    Dow, J.A.T.3
  • 15
    • 32544445408 scopus 로고    scopus 로고
    • Evolution of reproductive proteins from animals and plants
    • DOI 10.1530/rep.1.00357
    • Clark NL, Aagaard JE, Swanson WJ. 2006. Evolution of reproductive proteins from animals and plants. Reproduction 131:11-22. (Pubitemid 43230698)
    • (2006) Reproduction , vol.131 , Issue.1 , pp. 11-22
    • Clark, N.L.1    Aagaard, J.E.2    Swanson, W.J.3
  • 16
    • 35748964468 scopus 로고    scopus 로고
    • Duplication and selection on abalone sperm lysin in an allopatric population
    • Clark NL, Findlay GD, Yi X, Maccoss MJ, Swanson WJ. 2007. Duplication and selection on abalone sperm lysin in an allopatric population. Mol Biol Evol. 24:2081-2090.
    • (2007) Mol Biol Evol. , vol.24 , pp. 2081-2090
    • Clark, N.L.1    Findlay, G.D.2    Yi, X.3    Maccoss, M.J.4    Swanson, W.J.5
  • 17
    • 33750905854 scopus 로고    scopus 로고
    • Segregation of sperm mitochondria in two- and four-cell embryos of the blue mussel Mytilus edulis: Implications for the mechanism of doubly uniparental inheritance of mitochondrial DNA
    • DOI 10.1139/G06-036
    • Cogswell AT, Kenchington ELR, Zouros E. 2006. Segregation of sperm mitochondria in two-and four-cell embryos of the blue mussel Mytilus edulis: implications for the mechanism of doubly uniparental inheritance of mitochondrial DNA. Genome 49:799-807. (Pubitemid 44727338)
    • (2006) Genome , vol.49 , Issue.7 , pp. 799-807
    • Cogswell, A.T.1    Kenchington, E.L.R.2    Zouros, E.3
  • 18
    • 79958295857 scopus 로고    scopus 로고
    • Association between sex-biased gene expression and mutations with sex-specific phenotypic consequences in Drosophila
    • Connallon T, Clark AG. 2011. Association between sex-biased gene expression and mutations with sex-specific phenotypic consequences in Drosophila. Genome Biol Evol. 3:151-155.
    • (2011) Genome Biol Evol. , vol.3 , pp. 151-155
    • Connallon, T.1    Clark, A.G.2
  • 19
    • 23644449885 scopus 로고    scopus 로고
    • Intergenomic conflict revealed by patterns of sex-biased gene expression
    • DOI 10.1016/j.tig.2005.07.006, PII S0168952505001964
    • Connallon T, Knowles LL. 2005. Intergenomic conflict revealed by patterns of sex-biased gene expression. Trends Genet. 21:495-499. (Pubitemid 41132583)
    • (2005) Trends in Genetics , vol.21 , Issue.9 , pp. 495-499
    • Connallon, T.1    Knowles, L.L.2
  • 21
    • 10344229911 scopus 로고    scopus 로고
    • Sexual and temporal dynamics of molecular evolution in C. elegans development
    • DOI 10.1093/molbev/msh267
    • Cutter AD, Ward S. 2005. Sexual and temporal dynamics of molecular evolution in C. elegans development. Mol Biol Evol. 22:178-188. (Pubitemid 39628555)
    • (2005) Molecular Biology and Evolution , vol.22 , Issue.1 , pp. 178-188
    • Cutter, A.D.1    Ward, S.2
  • 22
    • 0009685869 scopus 로고
    • Sexual development and maturity of Tapes philippinarum
    • Tapes philippinarum, biologia e sperimentazione, Treviso Italy
    • Devauchelle N. 1990. Sexual development and maturity of Tapes philippinarum. In:Tapes philippinarum, biologia e sperimentazione. Treviso (Italy): Ente Sviluppo Agricolo Veneto (ESAV). p. 47-62.
    • (1990) Ente Sviluppo Agricolo Veneto (ESAV) , pp. 47-62
    • Devauchelle, N.1
  • 23
    • 77949285980 scopus 로고    scopus 로고
    • Mitochondrial phylogenomics of the Bivalvia (Mollusca): Searching for the origin and mitogenomic correlates of doubly uniparental inheritance of mtDNA
    • Doucet-Beaupré H, Breton S, Chapman EG, Blier PU, Bogan AE, Stewart DT, Hoeh WR. 2010. Mitochondrial phylogenomics of the Bivalvia (Mollusca): searching for the origin and mitogenomic correlates of doubly uniparental inheritance of mtDNA. BMC Evol Biol. 10:50.
    • (2010) BMC Evol Biol. , vol.10 , pp. 50
    • Doucet-Beaupré, H.1    Breton, S.2    Chapman, E.G.3    Blier, P.U.4    Bogan, A.E.5    Stewart, D.T.6    Hoeh, W.R.7
  • 24
    • 34548013932 scopus 로고    scopus 로고
    • The evolution of sex-biased genes and sex-biased gene expression
    • DOI 10.1038/nrg2167, PII NRG2167
    • Ellegren H, Parsch J. 2007. The evolution of sex-biased genes and sexbiased gene expression. Nat Rev Genet. 8:689-698. (Pubitemid 47281991)
    • (2007) Nature Reviews Genetics , vol.8 , Issue.9 , pp. 689-698
    • Ellegren, H.1    Parsch, J.2
  • 25
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. II. Error probabilities
    • Ewing B, Green P. 1998. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 8:186-194. (Pubitemid 28177230)
    • (1998) Genome Research , vol.8 , Issue.3 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 26
    • 0347519176 scopus 로고    scopus 로고
    • Mechanisms of germ cell specification across the metazoans: Epigenesis and preformation
    • DOI 10.1242/dev.00804
    • Extavour CG, Akam M. 2003. Mechanisms of germ cell specification across the metazoans: epigenesis and preformation. Development 130:5869-5884. (Pubitemid 38008792)
    • (2003) Development , vol.130 , Issue.24 , pp. 5869-5884
    • Extavour, C.G.1    Akam, M.2
  • 29
    • 34249075994 scopus 로고    scopus 로고
    • Natural genetic variation in cuticular hydrocarbon expression in male and female Drosophila melanogaster
    • DOI 10.1534/genetics.106.065771
    • Foley B, Chenoweth SF, Nuzhdin SV, Blows MW. 2007. Natural genetic variation in cuticular hydrocarbon expression in male and female D. melanogaster. Genetics 175:1465-1477. (Pubitemid 46798245)
    • (2007) Genetics , vol.175 , Issue.3 , pp. 1465-1477
    • Foley, B.1    Chenoweth, S.F.2    Nuzhdin, S.V.3    Blows, M.W.4
  • 30
    • 0028261817 scopus 로고
    • Ubiquitin C-terminal hydrolase as a putative factor involved in sex differentiation of fish (temperate wrasse, Halichoeres poecilopterus)
    • Fujiwara Y, Hatano K, Hirabayashi T, Miyazaki JI. 1994. Ubiquitin C-terminal hydrolase as a putative factor involved in sex differentiation of fish (temperate wrasse, Halichoeres poecilopterus). Differentiation 56:13-20. (Pubitemid 24102002)
    • (1994) Differentiation , vol.56 , Issue.1-2 , pp. 13-20
    • Fujiwara, Y.1    Hatano, K.2    Hirabayashi, T.3    Miyazaki, J.-I.4
  • 33
    • 0032967177 scopus 로고    scopus 로고
    • Sex and the single worm: Sex determination in the nematode C. elegans
    • DOI 10.1016/S0925-4773(99)00024-6, PII S0925477399000246
    • Hansen D, Pilgrim D. 1999. Sex and the single worm: sex determination in the nematode C. elegans. Mech Dev. 83:3-15. (Pubitemid 29302077)
    • (1999) Mechanisms of Development , vol.83 , Issue.1-2 , pp. 3-15
    • Hansen, D.1    Pilgrim, D.2
  • 35
    • 0023403173 scopus 로고
    • A genetic analysis of the sex-determining gene, tra-1, in the nematode Caenorhabditis elegans
    • Hodgkin J. 1987. A genetic analysis of the sex-determining gene, tra-1, in the nematode Caenorhabditis elegans. Genes Dev. 1:731-745.
    • (1987) Genes Dev. , vol.1 , pp. 731-745
    • Hodgkin, J.1
  • 36
    • 58149203231 scopus 로고    scopus 로고
    • InterPro: The integrative protein signature database
    • 38 co-authors, Database Issue
    • Hunter S, Apweiler R, Attwood TK, et al. (38 co-authors). 2009. InterPro: the integrative protein signature database. Nucleic Acids Res. 37 (Database Issue): D211-D215.
    • (2009) Nucleic Acids Res. , vol.37
    • Hunter, S.1    Apweiler, R.2    Attwood, T.K.3
  • 37
    • 33749156386 scopus 로고    scopus 로고
    • Genome-wide DNA polymorphism analyses using VariScan
    • Hutter S, Vilella AJ, Rozas J. 2006. Genome-wide DNA polymorphism analyses using VariScan. BMC Bioinformatics 7:409.
    • (2006) BMC Bioinformatics , vol.7 , pp. 409
    • Hutter, S.1    Vilella, A.J.2    Rozas, J.3
  • 38
    • 0035733752 scopus 로고    scopus 로고
    • The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster
    • DOI 10.1038/ng766
    • Jin W, Riley RM, Wolfinger RD, White KP, Passador-Gurgel G, Gibson G. 2001. The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster. Nat Genet. 29:389-395. (Pubitemid 34326688)
    • (2001) Nature Genetics , vol.29 , Issue.4 , pp. 389-395
    • Jin, W.1    Riley, R.M.2    Wolfinger, R.D.3    White, K.P.4    Passador-Gurgell, G.5    Gibson, G.6
  • 39
    • 0036671925 scopus 로고    scopus 로고
    • Genetics of mother-dependent sex ratio in blue mussels (Mytilus spp.) and Implications for doubly uniparental inheritance of mitochondrial DNA
    • Kenchington E, MacDonald B, Cao L, Tsagkarakis D, Zouros E. 2002. Genetics of mother-dependent sex ratio in blue mussels (Mytilus spp.) and implications for doubly uniparental inheritance of mitochondrial DNA. Genetics 161:1579-1588. (Pubitemid 35014758)
    • (2002) Genetics , vol.161 , Issue.4 , pp. 1579-1588
    • Kenchington, E.1    MacDonald, B.2    Cao, L.3    Tsagkarakis, D.4    Zouros, E.5
  • 40
    • 70349182522 scopus 로고    scopus 로고
    • Paternal mtDNA and maleness are co-inherited but not causally linked in mytilid mussels
    • Kenchington EL, Hamilton L, Cogswell A, Zouros E. 2009. Paternal mtDNA and maleness are co-inherited but not causally linked in mytilid mussels. PLoS One 4:e6976.
    • (2009) PLoS One. , vol.4
    • Kenchington, E.L.1    Hamilton, L.2    Cogswell, A.3    Zouros, E.4
  • 42
    • 48249084602 scopus 로고    scopus 로고
    • E1 ubiquitin-activating enzyme UBA-1 plays multiple roles throughout C. elegans development
    • Kulkarni M, Smith HE. 2008. E1 ubiquitin-activating enzyme UBA-1 plays multiple roles throughout C. elegans development. PLoS Genet. 4:e1000131.
    • (2008) PLoS Genet. , vol.4
    • Kulkarni, M.1    Smith, H.E.2
  • 44
    • 0001534183 scopus 로고    scopus 로고
    • Sperm limitation, sperm competition and sexual selection in external fertilizers
    • Birkhead T, Møller A, editors, San Diego CA: Academic Press
    • Levitan DR. 1998. Sperm limitation, sperm competition and sexual selection in external fertilizers. In: Birkhead T, Møller A, editors. Sperm competition and sexual selection. San Diego (CA): Academic Press. p. 173-215.
    • (1998) Sperm Competition and Sexual Selection , pp. 173-215
    • Levitan, D.R.1
  • 45
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler Transform
    • Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler Transform. Bioinformatics 25:1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 47
    • 0028961745 scopus 로고
    • High-resolution mapping of genetic factors affecting abdominal bristle number in Drosophila melanogaster
    • Long AD, Mullaney SL, Reid LA, Fry JD, Langley CH, Mackay TF. 1995. High-resolution mapping of genetic factors affecting abdominal bristle number in Drosophila melanogaster. Genetics 139:1273-1291.
    • (1995) Genetics , vol.139 , pp. 1273-1291
    • Long, A.D.1    Mullaney, S.L.2    Reid, L.A.3    Fry, J.D.4    Langley, C.H.5    Mackay, T.F.6
  • 48
    • 67649130521 scopus 로고    scopus 로고
    • Are sex-biased genes more dispensable?
    • Mank JE, Ellegren H. 2009. Are sex-biased genes more dispensable? Biol Lett. 5:409-412.
    • (2009) Biol Lett. , vol.5 , pp. 409-412
    • Mank, J.E.1    Ellegren, H.2
  • 49
    • 38349083274 scopus 로고    scopus 로고
    • Pleiotropic constraint hampers the resolution of sexual antagonism in vertebrate gene expression
    • DOI 10.1086/523954
    • Mank JE, Hultin-Rosenberg L, Zwahlen M, Ellegren H. 2008. Pleiotropic constrain hampers the resolution of sexual antagonism in vertebrate gene expression. Am Nat. 171:35-43. (Pubitemid 351226026)
    • (2008) American Naturalist , vol.171 , Issue.1 , pp. 35-43
    • Mank, J.E.1    Hultin-Rosenberg, L.2    Zwahlen, M.3    Ellegren, H.4
  • 52
    • 79957479702 scopus 로고    scopus 로고
    • Towards a more nuanced understanding of the relationship between sex-biased gene expression and rates of protein coding sequence evolution
    • Meisel RP. 2011. Towards a more nuanced understanding of the relationship between sex-biased gene expression and rates of protein coding sequence evolution. Mol Biol Evol. 28:1893-1900.
    • (2011) Mol Biol Evol. , vol.28 , pp. 1893-1900
    • Meisel, R.P.1
  • 54
    • 79955810928 scopus 로고    scopus 로고
    • Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: Genomic tools for environmental monitoring
    • 11 co-authors
    • Milan M, Coppe A, Reinhardt R, et al. (11 co-authors). 2011. Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring. BMC Genomics 12:234.
    • (2011) BMC Genomics , vol.12 , pp. 234
    • Milan, M.1    Coppe, A.2    Reinhardt, R.3
  • 55
    • 46249106990 scopus 로고    scopus 로고
    • Mapping and quantifying mammalian transcriptomes by RNA-Seq
    • DOI 10.1038/nmeth.1226, PII NMETH.1226
    • Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. 2008. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods. 5:621-628. (Pubitemid 351911867)
    • (2008) Nature Methods , vol.5 , Issue.7 , pp. 621-628
    • Mortazavi, A.1    Williams, B.A.2    McCue, K.3    Schaeffer, L.4    Wold, B.5
  • 56
    • 17644386183 scopus 로고    scopus 로고
    • The F box protein Dsg1/Mdm30 is a transcriptional coactivator that stimulates Gal4 turnover and cotranscriptional mRNA processing
    • DOI 10.1016/j.cell.2004.12.025
    • Muratani M, Kung C, Shokat KM, Tansey WP. 2005. The F box protein Dsg1/Mdm30 is a transcriptional coactivator that stimulates Gal4 turnover and cotranscriptional mRNA processing. Cell 120:887-899. (Pubitemid 40568803)
    • (2005) Cell , vol.120 , Issue.6 , pp. 887-899
    • Muratani, M.1    Kung, C.2    Shokat, K.M.3    Tansey, W.P.4
  • 58
    • 21344470933 scopus 로고    scopus 로고
    • Specific location of sperm mitochondria in mussel Mytilus galloprovincialis zygotes stained by MitoTracker
    • DOI 10.1111/j.1440-169X.2005.00801.x
    • Obata M, Komaru A. 2005. Specific location of sperm mitochondria in mussel Mytilus galloprovincialis zygotes stained by Mito-Tracker. Dev Growth Differ. 47:255-263. (Pubitemid 40904925)
    • (2005) Development Growth and Differentiation , vol.47 , Issue.4 , pp. 255-263
    • Obata, M.1    Komaru, A.2
  • 59
    • 0346460960 scopus 로고    scopus 로고
    • Paucity of genes on the Drosophila X chromosome showing male-biased expression
    • DOI 10.1126/science.1079190
    • Parisi M, Nuttall R, Naiman D, Bouffard G, Malley J, Andrews J, Eastman S, Oliver B. 2003. Paucity of genes on the Drosophila X chromosome showing male-biased expression. Science 299:697-700. (Pubitemid 36159482)
    • (2003) Science , vol.299 , Issue.5607 , pp. 697-700
    • Parisi, M.1    Nuttall, R.2    Naiman, D.3    Bouffard, G.4    Malley, J.5    Andrews, J.6    Eastman, S.7    Oliver, B.8
  • 60
    • 59949100674 scopus 로고    scopus 로고
    • Doubly uniparental inheritance: Two mitochondrial genomes, one precious model for organelle DNA inheritance and evolution
    • Passamonti M, Ghiselli F. 2009. Doubly uniparental inheritance: two mitochondrial genomes, one precious model for organelle DNA inheritance and evolution. DNA Cell Biol. 28:79-89.
    • (2009) DNA Cell Biol. , vol.28 , pp. 79-89
    • Passamonti, M.1    Ghiselli, F.2
  • 61
    • 27944491483 scopus 로고    scopus 로고
    • Esterase-like and fibronectin-like polypeptides share similar sex-cell-biased patterns in the gonad of hermaphroditic and gonochoric species of bivalve mollusks
    • DOI 10.1007/s00441-005-0032-0
    • Paz M, Torrado M, Korochkin LI, Mikhailov AT. 2005. Esterase-like and fibronectin-like polypeptides share similar sex-cell-biased patterns in the gonad of hermaphroditic and gonochoric species of bivalve mollusks. Cell Tissue Res. 322:475-489. (Pubitemid 41682357)
    • (2005) Cell and Tissue Research , vol.322 , Issue.3 , pp. 475-489
    • Paz, M.1    Torrado, M.2    Korochkin, L.I.3    Mikhailov, A.T.4
  • 62
    • 78049355057 scopus 로고    scopus 로고
    • Towards a phylogeny of mollusks: Bivalves' early evolution as revealed by mitochondrial genes
    • Plazzi F, Passamonti M. 2010. Towards a phylogeny of mollusks: bivalves' early evolution as revealed by mitochondrial genes. Mol Phylogenet Evol. 57:641-657.
    • (2010) Mol Phylogenet Evol. , vol.57 , pp. 641-657
    • Plazzi, F.1    Passamonti, M.2
  • 63
    • 33750452661 scopus 로고    scopus 로고
    • Widespread adaptive evolution of Drosophila genes with sex-biased expression
    • DOI 10.1534/genetics.106.058008
    • Proschel M, Zhang Z, Parsch J. 2006. Widespread adaptive evolution of Drosophila genes with sex-biased expression. Genetics 174:893-900. (Pubitemid 44656476)
    • (2006) Genetics , vol.174 , Issue.2 , pp. 893-900
    • Proschel, M.1    Zhang, Z.2    Parsch, J.3
  • 64
    • 0037504137 scopus 로고    scopus 로고
    • Sex-dependent gene expression and evolution of the Drosophila transcriptome
    • DOI 10.1126/science.1085881
    • Ranz JM, Castillo-Davis CI, Meiklejohn CD, Hartl DL. 2003. Sexdependent gene expression and evolution of the Drosophila transcriptome. Science 300:1742-1745. (Pubitemid 36712569)
    • (2003) Science , vol.300 , Issue.5626 , pp. 1742-1745
    • Ranz, J.M.1    Castillo-Davis, C.I.2    Meiklejohn, C.D.3    Hartl, D.L.4
  • 65
    • 0842344618 scopus 로고    scopus 로고
    • Genome-wide germline-enriched and sex-biased expression profiles in Caenorhabditis elegans
    • DOI 10.1242/dev.00914
    • Reinke V, Gil IS, Ward S, Kazmer K. 2004. Genome-wide germlineenriched and sex-biased expression profiles in Caenorhabditis elegans. Development 131:311-323. (Pubitemid 38181371)
    • (2004) Development , vol.131 , Issue.2 , pp. 311-323
    • Reinke, V.1    Gil, I.S.2    Ward, S.3    Kazmer, K.4
  • 67
    • 19944434180 scopus 로고    scopus 로고
    • Comparative genome sequencing of Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution
    • 52 co-authors
    • Richards S, Liu Y, Bettencourt BR, et al. (52 co-authors). 2005. Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution. Genome Res. 15:1-18.
    • (2005) Genome Res. , vol.15 , pp. 1-18
    • Richards, S.1    Liu, Y.2    Bettencourt, B.R.3
  • 68
    • 77953176036 scopus 로고    scopus 로고
    • A scaling normalization method for differential expression analysis of RNA-seq data
    • Robinson MD, Oshlack A. 2010. A scaling normalization method for differential expression analysis of RNA-seq data. Genome Biol. 11:R25.
    • (2010) Genome Biol. , vol.11
    • Robinson, M.D.1    Oshlack, A.2
  • 69
    • 36448981743 scopus 로고    scopus 로고
    • Moderated statistical tests for assessing differences in tag abundance
    • DOI 10.1093/bioinformatics/btm453
    • Robinson MD, Smyth GK. 2007. Moderated statistical tests for assessing differences in tag abundance. Bioinformatics 23:2881-2887. (Pubitemid 350162894)
    • (2007) Bioinformatics , vol.23 , Issue.21 , pp. 2881-2887
    • Robinson, M.D.1    Smyth, G.K.2
  • 70
    • 33646859902 scopus 로고    scopus 로고
    • Bivalve genomics
    • DOI 10.1016/j.aquaculture.2006.02.023, PII S0044848606001232
    • Saavedra C, Bachère E. 2006. Bivalve genomics. Aquaculture 256:1-14. (Pubitemid 43786392)
    • (2006) Aquaculture , vol.256 , Issue.1-4 , pp. 1-14
    • Saavedra, C.1    Bachere, E.2
  • 71
    • 0030980445 scopus 로고    scopus 로고
    • Male-dependent doubly uniparental inheritance of mitochondrial DNA and female-dependent sex-ratio in the mussel Mytilus galloprovincialis
    • Saavedra C, Reyero MI, Zouros E. 1997. Male-dependent doubly uniparental inheritance of mitochondrial DNA and femaledependent sex-ratio in the mussel Mytilus galloprovincialis. Genetics 145:1073-1082. (Pubitemid 27149112)
    • (1997) Genetics , vol.145 , Issue.4 , pp. 1073-1082
    • Saavedra, C.1    Reyero, M.-I.2    Zouros, E.3
  • 72
    • 0035979738 scopus 로고    scopus 로고
    • Regulation of transcriptional activation domain function by ubiquitin
    • DOI 10.1126/science.1062079
    • Salghetti SE, Caudy AA, Chenoweth JG, Tansey WP. 2001. Regulation of transcriptional activation domain function by ubiquitin. Science 293:1651-1653. (Pubitemid 32807843)
    • (2001) Science , vol.293 , Issue.5535 , pp. 1651-1653
    • Salghetti, S.E.1    Caudy, A.A.2    Chenoweth, J.G.3    Tansey, W.P.4
  • 73
    • 0000834188 scopus 로고
    • Pelecypoda (excluding Ostreidae)
    • Giese AC, Pearse JS, editors, New York: Academic Press
    • Sastry AN. 1979. Pelecypoda (excluding Ostreidae). In: Giese AC, Pearse JS, editors. Reproduction of marine invertebrates. Vol. 5. New York: Academic Press. p. 113-292.
    • (1979) Reproduction of Marine Invertebrates , vol.5 , pp. 113-292
    • Sastry, A.N.1
  • 74
    • 33845448653 scopus 로고    scopus 로고
    • Proteasomal ubiquitin receptor RPN-10 controls sex determination in Caenorhabditis elegans
    • DOI 10.1091/mbc.E06-05-0437
    • Shimada M, Kanematsu K, Tanaka K, Yokosawa H, Kawahara H. 2006. Proteasomal ubiquitin receptor RPN-10 controls sex determination in Caenorhabditis elegans. Mol Biol Cell. 17:5356-5371. (Pubitemid 44907375)
    • (2006) Molecular Biology of the Cell , vol.17 , Issue.12 , pp. 5356-5371
    • Shimada, M.1    Kanematsu, K.2    Tanaka, K.3    Yokosawa, H.4    Kawahara, H.5
  • 76
    • 0028099531 scopus 로고
    • Sex-limited mitochondrial DNA transmission in the marine mussel Mytilus edulis
    • Skibinski DO, Gallagher C, Beynon CM. 1994b. Sex-limited mitochondrial DNA transmission in the marine mussel Mytilus edulis. Genetics 138:801-809. (Pubitemid 24337806)
    • (1994) Genetics , vol.138 , Issue.3 , pp. 801-809
    • Skibinski, D.O.F.1    Gallagher, C.2    Beynon, C.M.3
  • 77
    • 34250828996 scopus 로고    scopus 로고
    • A CUL-2 Ubiquitin Ligase Containing Three FEM Proteins Degrades TRA-1 to Regulate C. elegans Sex Determination
    • DOI 10.1016/j.devcel.2007.05.008, PII S1534580707002031
    • Starostina NG, Lim JM, Schvarzstein M, Wells L, Spence AM, Kipreos ET. 2007. A CUL-2 ubiquitin ligase containing three FEM proteins degrades TRA-1 to regulate C. elegans sex determination. Dev Cell. 13:127-139. (Pubitemid 46972037)
    • (2007) Developmental Cell , vol.13 , Issue.1 , pp. 127-139
    • Starostina, N.G.1    Lim, J.-m.2    Schvarzstein, M.3    Wells, L.4    Spence, A.M.5    Kipreos, EdwardT.6
  • 78
    • 37849045569 scopus 로고    scopus 로고
    • Ubiquitin C-terminal hydrolase-L1 (Uch-L1) correlates with gonadal transformation in the rice field eel
    • Sun J, Shang X, Tian Y, Zhao W, He Y, Chen K, Cheng H, Zhou R. 2008. Ubiquitin C-terminal hydrolase-L1 (Uch-L1) correlates with gonadal transformation in the rice field eel. FEBS J. 275:242-249.
    • (2008) FEBS J. , vol.275 , pp. 242-249
    • Sun, J.1    Shang, X.2    Tian, Y.3    Zhao, W.4    He, Y.5    Chen, K.6    Cheng, H.7    Zhou, R.8
  • 79
    • 0037405064 scopus 로고    scopus 로고
    • Ubiquitin-dependent proteolysis in mammalian spermatogenesis, fertilization, and sperm quality control: Killing three birds with one stone
    • DOI 10.1002/jemt.10319
    • Sutovsky P. 2003. Ubiquitin-dependent proteolysis in mammalian spermatogenesis, fertilization, and sperm quality control: killing three birds with one stone. Microsc Res Tech. 61:88-102. (Pubitemid 36469238)
    • (2003) Microscopy Research and Technique , vol.61 , Issue.1 , pp. 88-102
    • Sutovsky, P.1
  • 80
    • 0033883489 scopus 로고    scopus 로고
    • Ubiquitinated sperm mitochondria, selective proteolysis, and the regulation of mitochondrial inheritance in mammalian embryos
    • Sutovsky P, Moreno RD, Ramalho-Santos J, Dominko T, Simerly C, Schatten G. 2000. Ubiquitinated sperm mitochondria, selective proteolysis, and the regulation of mitochondrial inheritance in mammalian embryos. Biol Reprod. 63:582-590. (Pubitemid 30639950)
    • (2000) Biology of Reproduction , vol.63 , Issue.2 , pp. 582-590
    • Sutovsky, P.1    Moreno, R.D.2    Ramalho-Santos, J.3    Dominko, T.4    Simerly, C.5    Schatten, G.6
  • 81
    • 53849094422 scopus 로고    scopus 로고
    • Sex determination in mammals-before and after the evolution of SRY
    • Wallis MC, Waters PD, Graves JA. 2008. Sex determination in mammals-before and after the evolution of SRY. Cell Mol Life Sci. 65:3182.
    • (2008) Cell Mol Life Sci. , vol.65 , pp. 3182
    • Wallis, M.C.1    Waters, P.D.2    Graves, J.A.3
  • 83
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
    • DOI 10.1101/gr.074492.107
    • Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829. (Pubitemid 351645072)
    • (2008) Genome Research , vol.18 , Issue.5 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 84
    • 6344272229 scopus 로고    scopus 로고
    • Molecular evolution of sex-biased genes in Drosophila
    • DOI 10.1093/molbev/msh223
    • Zhang Z, Hambuch TM, Parsch J. 2004. Molecular evolution of sexbiased genes in Drosophila. Mol Biol Evol. 21:2130-2139. (Pubitemid 39391990)
    • (2004) Molecular Biology and Evolution , vol.21 , Issue.11 , pp. 2130-2139
    • Zhang, Z.1    Hambuch, T.M.2    Parsch, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.