Interspecific and interploidal gene flow in Central European Arabidopsis (Brassicaceae)

BMC Evolutionary Biology

Volumn 11, Issue 1, 2011, Pages

  Jørgensen, Marte H ^a   Ehrich, Dorothee ^b   Schmickl, Roswitha ^c   Koch, Marcus A ^c   Brysting, Anne K ^a  

^a UNIVERSITY OF OSLO   (Norway)

^b UNIVERSITY OF TROMSØ   (Norway)

^c UNIVERSITY OF HEIDELBERG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

FLOW CYTOMETRY; GENE FLOW; GENETIC MARKER; HERB; HYBRIDIZATION; INTERSPECIFIC INTERACTION; INTROGRESSION; PLASTID; POLYPLOIDY; POPULATION STRUCTURE;

CENTRAL EUROPE;

ARABIDOPSIS; ARABIDOPSIS ARENOSA; ARABIDOPSIS LYRATA; BRASSICACEAE;

PLANT DNA;

ARABIDOPSIS; ARTICLE; DNA SEQUENCE; EUROPE; GENE FLOW; GENETICS; ISOLATION AND PURIFICATION; PLANT GENOME; TETRAPLOIDY;

ARABIDOPSIS; DNA, PLANT; EUROPE; GENE FLOW; GENOME, PLANT; SEQUENCE ANALYSIS, DNA; TETRAPLOIDY;

EID: 82255170829     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-11-346     Document Type: Article

References (87)

1. Molecular data and the dynamic nature of polyploidy. Soltis DE, Soltis PS, Critical Reviews in Plant Sciences 1993 12 3 243 273
2. Polyploidy: recurrent formation and genome evolution. Soltis DE, Soltis PS, Trends in Ecology & Evolution 1999 14 9 348 352 (Pubitemid 29376842)
3. Advances in the study of polyploidy since Plant speciation. Soltis DE, Soltis PS, Tate JA, New Phytologist 2003 161 173 191
4. Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event. Fawcett JA, Maere S, Van de Peer Y, Proceedings of the National Academy of Sciences of the United States of America 2009 106 5737-5742
5. The frequency of polyploid speciation in vascular plants. Wood TE, Takebayashi N, Barker MS, Mayrose I, Greenspoon PB, Rieseberg LH, Proceedings of the National Academy of Sciences of the United States of America 2009 106 33 13875 13879
6. What we still don't know about polyploidy. Soltis DE, Buggs RJA, Doyle JJ, Soltis PS, Taxon 2010 59 5 1387 1403
7. Segregation models for disomic, tetrasomic and intermediate inheritance in tetraploids: a general procedure applied to Rorippa (yellow cress) microsatellite data. Stift M, Berenos C, Kuperus P, Tienderen PHv, Genetics 2008 179 2113 2123
8. Autopolyploidy in angiosperms: have we grossly underestimated the number of species? Soltis DE, Soltis PS, Schemske DW, Hancock JF, Thompson JN, Husband BC, Judd WS, Taxon 2007 56 1 13 30 (Pubitemid 46492436)
9. A synopsis of Arabidopsis (Brassicaceae). O'Kane SL, Al-Shehbaz IA, Novon 1997 7 323 327 (Pubitemid 28173911)
10. Evolution of the perennial soybean polyploid complex (Glycine subgenus Glycine): a study of contrasts. Doyle JJ, Doyle JL, Rauscher JT, Brown AHD, Biological Journal of the Linnean Society 2004 82 583 597 (Pubitemid 39123345)
11. Evolutionary biology: speciation. Hendry AP, Nature 2009 458 162 164
12. Introgression of fitness genes across a ploidy barrier. Chapman MA, Abbott RJ, New Phytologist 2010 186 63 71
13. Allopolyploid speciation in Persicaria (Polygonaceae): Insights from a low-copy nuclear region. Kim S-T, Sultan SE, Donoghue MJ, Proceedings of the National Academy of Sciences of the United States of America 2008 105 34 12370 12375
14. The allopolyploid Arabidopsis kamchatica originated from multiple individuals of Arabidopsis lyrata and Arabidopsis halleri. Shimizu-Inatsugi R, Lihová J, Iwanaga H, Kudoh H, Marhold K, Savolainen O, Watanabe K, Yakubov VV, Shimizu KK, Molecular Ecology 2009 18 19 4024 4048
15. Dynamics of polyploid formation in Tragopogon (Asteraceae): recurrent formation, gene flow, and population structure. Symonds VV, Soltis PS, Soltis DE, Evolution 2010 64 7 1984 2003
16. Genetic consequences of autopolyploidy in Tolmiea (Saxifragaceae). Soltis DE, Soltis PS, Evolution 1989 43 586 594
17. Multiple origins of polyploidy and the geographic structure of Heuchera grossulariifolia. Segraves KA, Thompson JN, Soltis PS, Soltis DE, Molecular Ecology 1999 8 253 262 (Pubitemid 29087623)
18. Glacial in situ survival in the Western Alps and polytopic autopolyploidy in Biscutella laevigita (Brassicaceae). Parisod C, Besnard G, Molecular Ecology 2007 16 2755 2767 (Pubitemid 47012146)
19. The role of triploid hybrids in the evolutionary dynamics of mixed-ploidy populations. Husband BC, Biological Journal of the Linnean Society 2004 82 537 546 (Pubitemid 39123341)
20. Reproductive isolation between autotetraploids and their diploid progenitors in fireweed, Chamerion angustifolium (Onagraceae). Husband BC, Sabara HA, New Phytologist 2003 161 703 713 (Pubitemid 38193009)
21. Polyploid speciation did not confer instant reproductive isolation in Capsella (Brassicaceae). Slotte T, Huang H, Lascoux M, Ceplitis A, Molecular Biology and Evolution 2008 25 7 1472 1481 (Pubitemid 351882022)
22. Population decline despite high genetic diversity in the new allopolyploid species Senecio cambrensis (Asteraceae). Abbott RJ, Ireland HE, Rogers HJ, Molecular Ecology 2007 16 1023 1033
23. Genetic diversity in diploid vs. tetraploid Rorippa amphibia (Brassicaceae). Luttikhuizen PC, Stift M, Kuperus P, Tienderen PHv, Molecular Ecology 2007 16 3544 3553 (Pubitemid 47383106)
24. Conservation of genetic diversity in British populations of the diploid endemic Coincya monensis ssp. monensis (Isle of Man Cabbage): the risk of hybridisation with the tetraploid alien, Coincya monensis ssp. cheiranthos. Facey PD, Lee PLM, Smith MNE, Hipkin CR, Conservation Genetics 2007 8 1029 1042 (Pubitemid 47174977)
25. Genetic differentiation and speciation in prealpine Cochlearia (Brassicaceae): Allohexaploid Cochlearia bavarica (Brassicaceae) compared to its diploid acestor Cochlearia pyrenaica in Germany and Austria. Koch MA, Plant Systematics and Evolution 2002 232 1-2 35 49
26. Comparative biogeography of the cytotypes of annual Microthlaspi perfoliatum (Brassicaceae) in Europe using isozymes and cpDNA data: refugia, diversity centers, and postglacial colonization. Koch MA, Bernhardt K-G, American Journal of Botany 2004 91 1 115 124 (Pubitemid 38106671)
27. Polyploid evolution and plastid DNA variation in the Dactylorhiza incarnata/maculata complex (Orchidaceae) in Scandinavia. Hedrén M, Nordström S, Ståhlberg D, Molecular Ecology 2008 17 5075 5091
28. Patterns, sources and ecological implications of clonal diversity in apomictic Ranunculus carpaticola (Ranunculus auricomus complex, Ranunculaceae). Paun O, Greilhuber J, Temsch EM, Hörandl E, Molecular Ecology 2006 15 897 910
29. The role of hybridization, polyploidization and glaciation in the origin and evolution of the apomictic Ranunculus cassubicus complex. Paun O, Stuessy TF, Hörandl E, New Phytologist 2006 171 223 236 (Pubitemid 43847077)
30. Taxonomy and evolutionary relationships in the Saxifraga rivularis complex. Jørgensen MH, Elven R, Tribsch A, Gabrielsen TM, Stedje B, Brochmann C, Systematic Botany 2006 31 4 702 729 (Pubitemid 46380240)
31. Polyploidy and the distribution of the arctic-alpine flora: new evidence and a new approach. Stebbins GL, Botanica Helvetica 1984 94 1 1 13
32. Arabidopsis kamchatica (Fisch. ex DC.) K.Shimizu & Kudoh and A. kamchatica subsp. kawasakiana (Makino) K.Shimizu & Kudoh, new combinations. Shimizu KK, Fujii S, Marhold K, Watanabe K, Kudoh H, Acta Phytotaxonomica et Geobotanica 2005 56 2 163 172
33. The origins of Arabidopsis suecica (Brassicaceae) as indicated by nuclear rDNA sequences. O'Kane SL, Schaal BA, Al-Shehbaz IA, Systematic Botany 1996 21 4 559 566
34. A unique recent origin of the allotetraploid species Arabidopsis suecica: evidence from nuclear DNA markers. Jakobsson M, Hagenblad J, Tavaré S, Säll T, Halldén C, Lind-Halldén C, Nordborg M, Molecular Biology and Evolution 2006 23 6 1217 1231 (Pubitemid 43781596)
35. The evolutionary history of the Arabidopsis lyrata complex: A hybrid in the amphi-Beringian area closes a large distribution gap and builds up a genetic barrier. Schmickl R, Jørgensen MH, Brysting AK, Koch MA, BMC Evolutionary Biology 2010 10 98
36. Chromosome numbers and dispersal of the Brassicaceae family in the Magadan district. Berkutenko AN, Tzytlenok SI, Pulkina SV, Botanicheskiy Zhurnal 1984 69 1 75 80
37. Checklist of the Panarctic Flora (PAF) vascular plants. Elven R, Murray DF, Razzhivin VY, Yurtsev BA, Oslo: National Centre for Biosystematics, University of Oslo 2008
38. Arabidopsis thaliana's wild relatives: an updated overview on systematics, taxonomy and evolution. Koch MA, Wernisch M, Schmickl R, Taxon 2008 57 3 933 943
39. Cytotaxonomische Beiträge zur Flora der Ostalpenländer, I. Polatschek A, sterreichische botanische Zeitschrift 1966 113 1 46
40. The chromosome numbers and taxonomy of some plant species from Siberia and Far East. Zhukova PG, Petrovsky VV, Plieva TV, Botanicheskiy Zhurnal 1973 58 1331 1342
41. Chromosome numbers and taxonomy of some plant species from the northern Asia regions. Zhukova PG, Petrovsky VV, Botanicheskiy Zhurnal 1987 72 12 1617 1624
42. The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Hu TT, Pattyn P, Bakker EG, Cao J, Cheng J-F, Clark RM, Fahlgren N, Fawcett JA, Grimwood J, Gundlach H, et al. Nature Genet 2011 43 5 476 481
43. Documented chromosome number checklist of Austrian vascular plants. Dobe C, Vitek E, Wien: Verlag des Naturhistorischen Museums Wien 2000
44. Reticulate evolution in glacial refuge areas-the genus Arabidopsis in the eastern Austrian Danube Valley (Wachau). Schmickl R, PhD thesis Heidelberg: Ruperto-Carola University of Heidelberg 2009
45. Arabidopsis hybrid speciation processes. Schmickl R, Koch MA, Proceedings of the National Academy of Sciences of the United States of America 2011 108 34 14192 14197
46. Flow Cytometry with Plant Cells. Doleel J, Suda J, eds, Weinheim: Wiley VCH Verlag GmbH & Co. KGaA 2007
47. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Hall TA, Nucleic Acids Symposium Series 1999 41 95 98
48. Evolution of trnF(GAA) pseudogenes in cruciferous plants. Schmickl R, Kiefer C, Dobe C, Koch MA, Plant Systematics and Evolution 2008 282 3-4 229 240
49. Evolution of the trnF(GAA) gene in Arabidopsis relatives and the Brassicaceae family: monophyletic origin and subsequent diversification of a plastidic pseudogene. Koch MA, Dobe C, Matschinger M, Bleeker W, Vogel J, Kiefer M, Mitchell-Olds T, Molecular Biology and Evolution 2005 22 4 1032 1043 (Pubitemid 40471416)
50. Recombinant DNA sequences generated by PCR amplification. Bradley RD, Hillis DM, Molecular Biology and Evolution 1997 14 5 592 593
51. Stimulation and suppression of PCR-mediated recombination. Judo MSB, Wedel AB, Wilson C, Nucleic Acids Research 1998 26 7 1819 1825 (Pubitemid 28291822)
52. Inferring the history of the polyploid Silene aegaea (Caryophyllaceae) using plastid and homoeologous nuclear DNA sequences. Popp M, Oxelman B, Molecular Phylogenetics and Evolution 2001 20 3 474 481 (Pubitemid 32835892)
53. PCR-mediated recombination in amplification products derived from polyploid cotton. Cronn R, Cedroni M, Haselkorn T, Grover C, Wendel JF, Theoretical and Applied Genetics 2002 104 482 489 (Pubitemid 36065078)
54. Challenges in polyploid phylogenetic reconstruction: a case story from the arctic-alpine Cerastium alpinum complex. Brysting AK, Mathiesen C, Marcussen T, Taxon 2011 60 2 333 347
55. Evaluation of PCR-generated chimeras, mutations and heteroduplexes with 16S rRNA gene-based cloning. Qiu X, Wu L, Huang H, McDonel PE, Palumbo AV, Tiedje JM, Zhou J, Applied and Environmental Microbiology 2001 67 2 880 887 (Pubitemid 32121383)
56. Intragenic recombination events and evidence for hybridspeciaton in Nicotiana (Solanaceae). Kelly LJ, Leitch AR, Clarkson JJ, Hunter RB, Knapp S, Chase MW, Molecular Biology and Evolution 2010 27 4 781 799
57. Consequences of recombination on traditional phylogenetic analysis. Schierup MH, Hein J, Genetics 2000 156 879 891
58. Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Hudson RR, Kaplan NL, Genetics 1985 111 147 164 (Pubitemid 16248827)
59. DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Librado P, Rozas J, Bioinformatics 2009 25 1451 1452
60. Neighbor-net: an agglomerative method for the construction of phylogenetic networks. Bryant D, Moulton V, Molecular Biology and Evolution 2004 21 2 255 265 (Pubitemid 38314614)
61. Application of phylogenetic networks in evolutionary studies. Huson DH, Bryant D, Molecular Biology and Evolution 2006 23 2 254 267 (Pubitemid 43100040)
62. Gaps as characters in sequence-based phylogenetic analyses. Simmons MP, Ochoterena H, Systematic Biology 2000 49 2 369 381
63. SeqState: Primer design and sequence statistics for phylogenetic DNA datasets. Müller K, Applied Bioinformatics 2005 4 1 65 69 (Pubitemid 41043903)
64. Estimation of allele frequencies in polyploids under certain patterns of inheritance. De Silva HN, Hall AJ, Rikkerink E, McNeilage MA, Fraser LG, Heredity 2005 95 327 334 (Pubitemid 41372111)
65. Arlequin ver 3.11 An Integrated Software Package for Population Genetics. Excoffier L, Laval G, Schneider S, Bern: Computational and Molecular Population Genetics Lab (CMPG), Institute of Zoology, University of Berne 2007
66. Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics. Hey J, Nielsen R, Proceedings of the National Academy of Sciences of the United States of America 2007 104 8 2785 2790 (Pubitemid 46327957)
67. Isolation with migration models for more than two populations. Hey J, Molecular Biology and Evolution 2010 27 4 905 920
68. Estimating the recombination parameter of a finite population model without selection. Hudson RR, Genetical Research 1987 50 245 250 (Pubitemid 18042123)
69. Recombination-filtered genomic datasets by information maximization. Woerner AE, Cox MP, Hammer MF, Bioinformatics 2007 23 1851 1853 (Pubitemid 47250325)
70. How robust are "isolation with migration" analyses to violations of the IM model? A simulation study. Strasburg JL, Rieseberg LH, Molecular Biology and Evolution 2010 27 2 297 310
71. Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. Wolfe KH, Li W-H, Sharp PM, Proceedings of the National Academy of Sciences of the United States of America 1987 84 9054 9058
72. Subdivision and haplotype structure in natural populations of Arabidopsis lyrata. Wright SI, Lauga B, Charlesworth D, Molecular Ecology 2003 12 1247 1263 (Pubitemid 36573126)
73. Molecular systematics of the Brassicaceae: evidence from coding plastidic MatK and nuclear Chs sequences. Koch MA, Haubold B, Mitchell-Olds T, American Journal of Botany 2001 88 2 534 544 (Pubitemid 33644899)
74. Documentation for IMa2. http://genfaculty.rutgers.edu/hey/software
75. Apomixis, polyploidy, and speciation in Dichanthium. De Wet JMJ, Harlan JR, Evolution 1970 24 270-277
76. On. Winge and a prayer: the origins of polyploidy. Harlan JR, De Wet JMJ, The Botanical Review 1975 41 4 361 390
77. Evolution and genetic differentiation among relatives of Arabidopsis thaliana. Koch MA, Matschinger M, Proceedings of the National Academy of Sciences of the United States of America 2007 104 15 6272 6277 (Pubitemid 47186084)
78. Other tetraploid species and conspecific diploids as sources of genetic variation for an autotetraploid. Stift M, Bregman R, Oostermeijer JGB, van Tienderen PH, American Journal of Botany 2010 97 11 1858 1866
79. Using principal component analysis to compare genetic diversity across polyploidy levels within plant complexes: an example from British Restharrows (Ononis spinosa and Ononis repens). Kloda JM, Dean PDG, Maddren C, MacDonald DW, Mayes S, Heredity 2008 100 253 260 (Pubitemid 351282122)
80. Speciation through homoploid hybridization between allotetraploids in peonies (Paeonia). Ferguson D, Sang T, Proceedings of the National Academy of Sciences of the United States of America 2001 98 7 3915 3919 (Pubitemid 32249872)
81. Genetic variation in Arabidopsis suecica and its parental species A. arenosa and A. thaliana. Lind-Halldén C, Halldén C, Säll T, Hereditas 2002 136 45 50 (Pubitemid 34925020)
82. Phylogeographic implications for the North American boreal-arctic Arabidopsis lyrata complex. Schmickl R, Jørgensen MH, Brysting AK, Koch MA, Plant Ecology & Diversity 2008 1 2 245 254
83. Multilocus analysis of genetic divergence between outcrossing Arabidopsis species: evidence of genome-wide admixture. Wang W-K, Ho C-W, Hung K-H, Wang K-H, Huang C-C, Araki H, Hwang C-C, Hsu T-W, Osada N, Chiang T-Y, New Phytologist 2010 188 2 488 500
84. Chromosomal evolution in higher plants. Stebbins GL, London: Edward Arnold (Publishers) Ltd. 1971
85. Aneuploidy and genetic variation in the Arabidopsis thaliana triploid respons. Henry IM, Dilkes BP, Young K, Watson B, Wu H, Comai L, Genetics 2005 170 1979 1988 (Pubitemid 41362847)
86. Habitat differentiation, hybridization and gene flow patterns in mixed populations of diploid and autotetraploid Dactylorhiza maculata s.l. (Orchidaceae). Ståhlberg D, Evolutionary Ecology 2009 23 295 328
87. Morphological, cytogenetic, and molecular evidence for introgressive hybridisation in birch. Thársson T, Salmela E, Anamthawat-Jánsson K, The Journal of Heredity 2001 92 5 404 408