Arabidopsis hybrid speciation processes

Proceedings of the National Academy of Sciences of the United States of America

Volumn 108, Issue 34, 2011, Pages 14192-14197

  Schmickl, Roswitha ^a   Koch, Marcus A ^a  

^a UNIVERSITY OF HEIDELBERG   (Germany)

Author keywords

Brassicaceae; Central Europe; Evolution

Indexed keywords

ADAPTATION; ALLOPOLYPLOIDY; ARABIDOPSIS; ARABIDOPSIS ARENOSA; ARABIDOPSIS KAMCHATICA; ARABIDOPSIS LYRATA PETRAEA; ARABIDOPSIS SUECICA; ARTICLE; CYTOTYPE; DEGLACIATION; ECOLOGICAL NICHE; GENE FLOW; GENETIC VARIABILITY; GLACIATION; HYBRID; INTROGRESSION; MIGRATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGEOGRAPHY; PLEISTOCENE; PRIORITY JOURNAL; SPECIES DIFFERENTIATION;

ARABIDOPSIS; AUSTRIA; CYTOGENETIC ANALYSIS; DIPLOIDY; DNA, CHLOROPLAST; GENETIC SPECIATION; GENETICS, POPULATION; HAPLOTYPES; HYBRIDIZATION, GENETIC; INBREEDING; MICROSATELLITE REPEATS; MOLECULAR SEQUENCE DATA; PRINCIPAL COMPONENT ANALYSIS; TETRAPLOIDY;

ARABIDOPSIS; ARABIDOPSIS ARENOSA; ARABIDOPSIS LYRATA; ARABIDOPSIS SUECICA; ARABIDOPSIS THALIANA; BRASSICACEAE;

EID: 80052159306     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1104212108     Document Type: Article

References (44)

1. Kleidon A, Malhi Y, Cox PM (2010) Maximum entropy production in environmental and ecological systems. Philos Trans R Soc Lond B Biol Sci 365:1297-1302.
2. Coyne JA, Orr HA (2004) Allopatric and parapatric speciation. Speciation (Sinauer, Sunderland, MA), pp 83-124.
3. Barton NH, Hewitt GM (1989) Adaptation, speciation and hybrid zones. Nature 341: 497-503.
4. Mallet J (2007) Hybrid speciation. Nature 446:279-283.
5. Rieseberg LH, Willis JH (2007) Plant speciation. Science 317:910-914. (Pubitemid 47301311)
6. Abbott RJ, Lowe AJ (2004) Origins, establishment and evolution of new polyploid species: Senecio cambrensis and S. eboracensis in the British Isles. Biol J Linn Soc Lond 82:467-474. (Pubitemid 39123335)
7. Milne RI, Abbott RJ (2008) Reproductive isolation among two interfertile Rhododendron species: Low frequency of post-F1 hybrid genotypes in alpine hybrid zones. Mol Ecol 17:1108-1121. (Pubitemid 351197367)
8. Koch MA, Wernisch M, Schmickl R (2008) Arabidopsis thaliana's wild relatives: An updated overview on systematics, taxonomy and evolution. Taxon 57:933-943.
9. O'Kane SL, Schaal BA, Al-Shehbaz IA (1996) The origins of Arabidopsis suecica (Brassicaceae) as indicated by nuclear rDNA sequences. Syst Bot 21:559-566.
10. Jakobsson M, et al. (2006) A unique recent origin of the allotetraploid species Arabidopsis suecica: Evidence from nuclear DNA markers. Mol Biol Evol 23:1217-1231. (Pubitemid 43781596)
11. Schmickl R, Jørgensen MH, Brysting AK, Koch MA (2010) The evolutionary history of the Arabidopsis lyrata complex: A hybrid in the amphi-Beringian area closes a large distribution gap and builds up a genetic barrier. BMC Evol Biol 10:98.
12. Shimizu-Inatsugi R, et al. (2009) The allopolyploid Arabidopsis kamchatica originated from multiple individuals of Arabidopsis lyrata and Arabidopsis halleri. Mol Ecol 18: 4024-4048.
13. Wang W-K, et al. (2010) Multilocus analysis of genetic divergence between outcrossing Arabidopsis species: Evidence of genome-wide admixture. New Phytol 188: 488-500.
14. Castric V, Bechsgaard J, Schierup MH, Vekemans X (2008) Repeated adaptive introgression at a gene under multiallelic balancing selection. PLoS Genet 4: e1000168.
15. Mesicek J (1970) Chromosome counts in Cardaminopsis arenosa agg. (Cruciferae). Preslia 42:225-248.
16. Polatschek A (1966) Cytotaxonomische Beiträge zur Flora der Ostalpenländer. Österr. Bot Z 113:1-46.
17. Mable BK, Beland J, Di Berardo C (2004) Inheritance and dominance of self-incompatibility alleles in polyploid Arabidopsis lyrata. Heredity 93:476-486. (Pubitemid 39415594)
18. Koch MA, Matschinger M (2007) Evolution and genetic differentiation among relatives of Arabidopsis thaliana. Proc Natl Acad Sci USA 104:6272-6277. (Pubitemid 47186084)
19. Birks HJB, Willis KJ (2008) Alpines, trees, and refugia in Europe. Plant Ecol Div 1: 147-160.
20. Nei M (1986) Definition and estimation of fixation indices. Evolution 40:643-645.
21. Comai L, et al. (2000) Phenotypic instability and rapid gene silencing in newly formed Arabidopsis allotetraploids. Plant Cell 12:1551-1568.
22. Yatabe Y, Kane NC, Scotti-Saintagne C, Rieseberg LH (2007) Rampant gene exchange across a strong reproductive barrier between the annual sunflowers, Helianthus annuus and H. petiolaris. Genetics 175:1883-1893. (Pubitemid 46789970)
23. Brennan AC, Bridle JR, Wang A-L, Hiscock SJ, Abbott RJ (2009) Adaptation and selection in the Senecio (Asteraceae) hybrid zone on Mount Etna, Sicily. New Phytol 183: 702-717.
24. Ashton PA, Abbott RJ (1992) Multiple origins and genetic diversity in the newly arisen allopolyploid species, Senecio cambrensis Rosser (Compositae). Heredity 68:25-32. (Pubitemid 23399659)
25. Symonds VV, Soltis PS, Soltis DE (2010) Dynamics of polyploid formation in Tragopogon (Asteraceae): Recurrent formation, gene flow, and population structure. Evolution 64:1984-2003.
26. Soltis DE, et al. (2004) Recent and recurrent polyploidy in Tragopogon (Asteraceae): Cytogenetic, genomic and genetic comparisons. Biol J Linn Soc Lond 82:485-501. (Pubitemid 39123337)
27. Koch MA, Dobeš C, Mitchell-Olds T (2003) Multiple hybrid formation in natural populations: Concerted evolution of the internal transcribed spacer of nuclear ribosomal DNA (ITS) in North American Arabis divaricarpa (Brassicaceae). Mol Biol Evol 20: 338-350. (Pubitemid 36427168)
28. Franzke A, Mummenhoff K (1999) Recent hybrid speciation in Cardamine (Brassicaceae): Conversion of nuclear ribosomal ITS sequences in statu nascendi. Theor Appl Genet 98:831-834. (Pubitemid 29212086)
29. Bleeker W (2007) Interspecific hybridization in Rorippa (Brassicaceae): Patterns and processes. Syst Biodivers 5:311-319.
30. Urbanska KM, Landolt E (1999) Patterns and processes of man-influenced hybridization in Cardamine L. Plant Evolution in Man-Made Habitats, eds van Raamsdonk LWD, den Nijs JCM (Hugo de Vries Laboratory, Amsterdam), pp 29-47.
31. Pacheco P, Stuessy TF, Crawford DJ (1991) Natural interspecific hybridization in Gunnera (Gunneraceae) of the Juan Fernandez Islands, Chile. Pac Sci 45:389-399.
32. Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19:11-15.
33. Clauss MJ, Cobban H, Mitchell-Olds T (2002) Cross-species microsatellite markers for elucidating population genetic structure in Arabidopsis and Arabis (Brassicaeae). Mol Ecol 11:591-601. (Pubitemid 34234380)
34. Koch MA, et al. (2005) Evolution of the trnF(GAA) gene in Arabidopsis relatives and the Brassicaceae family: Monophyletic origin and subsequent diversification of a plastidic pseudogene. Mol Biol Evol 22:1032-1043. (Pubitemid 40471416)
35. Clement M, Posada D, Crandall KA (2000) TCS: A computer program to estimate gene genealogies. Mol Ecol 9:1657-1659.
36. Templeton AR, Crandall KA, Sing CF (1992) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics 132:619-633.
37. Schierup MH, Mable BK, Awadalla P, Charlesworth D (2001) Identification and characterization of a polymorphic receptor kinase gene linked to the self-incompatibility locus of Arabidopsis lyrata. Genetics 158:387-399. (Pubitemid 32428659)
38. Corander J, Waldmann P, Sillanpää MJ (2003) Bayesian analysis of genetic differentiation between populations. Genetics 163:367-374. (Pubitemid 36222679)
39. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155:945-959. (Pubitemid 30397141)
40. Falush D, Stephens M, Pritchard JK (2003) Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies. Genetics 164: 1567-1587. (Pubitemid 37102217)
41. Ehrich D, et al. (2007) Genetic consequences of Pleistocene range shifts: Contrast between the Arctic, the Alps and the East African mountains. Mol Ecol 16:2542-2559.
42. Markwith SH, Stewart DJ, Dyer JL (2006) TETRASAT: A program for the population analysis of allotetraploid microsatellite data. Mol Ecol Notes 6:586-589. (Pubitemid 44252547)
43. Markwith SH, Scanlon MJ (2007) Multiscale analysis of Hymenocallis coronaria (Amaryllidaceae) genetic diversity, genetic structure, and gene movement under the influence of unidirectional stream flow. Am J Bot 94:151-160. (Pubitemid 46955032)
44. Podani J (2001) Syntax SYNTAX 2000. Computer Programs for Data Analysis in Ecology and Systematics: User's Manual (Scientia Publishing, Budapest, Hungaria), pp 1-53.