Range shift and loss of genetic diversity under climate change in Caryocar brasiliense, a Neotropical tree species

Tree Genetics and Genomes

Volumn 7, Issue 6, 2011, Pages 1237-1247

  Collevatti, Rosane G ^a   Nabout, João Carlos ^b   Diniz Filho, Jose Alexandre F ^a  

^a FEDERAL UNIVERSITY OF GOIÁS   (Brazil)

^b UNIVERSIDADE ESTADUAL DE GOIÁS   (Brazil)

Author keywords

Cerrado; Climate change; Genetic diversity; Niche models

Indexed keywords

CARYOCAR BRASILIENSE;

EID: 81355138693     PISSN: 16142942     EISSN: 16142950     Source Type: Journal    
DOI: 10.1007/s11295-011-0409-z     Document Type: Article

References (78)

1. Ab'Sáber A (2003) Os dominios de natureza no Brasil. Potencialidades paisagísticas. Atelie Editorial, Brazil.
2. Ackerly DD (2003) Community assembly, niche conservatism, and adaptive evolution in changing environments. Int J Plant Sci 164: S165-S184.
3. Aguilar R, Quesada M, Ashworth L, Herrerias-Diego Y, Lobo J (2008) Genetic consequences of habitat fragmentation in plant populations: susceptible signals in plant traits and methodological approaches. Mol Ecol 17: 5177-5188.
4. Araújo MB, Guisan A (2006) Five (or so) challenges for especies distribution modelling. J Biogeogr 33: 1677-1688.
5. Araújo MB, New M (2007) Ensemble forecasting of species distributions. Trends Ecol Evol 22: 42-47.
6. Araújo MB, Pearson RG (2005) Equilibrium of species' distributions with climate. Ecography 28: 693-695.
7. Beaumont LJ, Pitman AJ, Poulsen M, Hughes L (2007) Where will species go? Incorporating new advances in climate modeling into projections of species distributions. Glob Change Biol 13: 1368-1385.
8. Behling H (2003) Late glacial and Holocene vegetation, climate and fire history inferred from Lagoa Nova in the southeastern Brazilian lowland. Veg Hist Archaeobot 12: 263-270.
9. Behling H, Hooghiemstra H (2000) Neotropical savanna environments in space and time: Late Quaternary. In: Markgraf V (ed) Interhemispheric climate linkages. Academic, Oxford, pp 307-323.
10. Bradshaw AD (1991) Genostasis and the limits to evolution. Philos T Roy Soc B 333: 289-305.
11. Burt BB (2001) Evolutionary stasis, constraint and other terminology describing evolutionary patterns. Biol J Linn Soc 72: 509-517.
12. Bush MA, Hooghiemstra H (2005) Tropical biotic responses to climate change. In: Lovejoy TE, Hannah L (eds) Climate change and biodiversity. Yale University Press, New Haven, pp 125-156.
13. Caicedo AL, Stinchcombe JR, Olsen KM, Schmitt J, Purugganan MD (2004) Epistatic interaction between Arabidopsis FRI and FLC flowering time genes generates a latitudinal cline in life history traits. P Natl Acad Sci USA 101: 15670-15675.
14. Clark JS, Fastie C, Hurtt G, Jackson ST, Johnson C, King GA, Lewis M, Pacala S, Prentice C, Schupp EW, Webb T III, Wyckoff P (1998) Reid's paradox of rapid plant migration. BioScience 48: 13-24.
15. Collevatti RG, Brondani RVP, Grattapaglia D (1999) Development and characterization of microsatellite markers for genetic analysis of a Brazilian endangered tree species Caryocar brasiliense. Heredity 83: 748-756.
16. Collevatti RG, Grattapaglia D, Hay JD (2001) Population genetic structure of the endangered tropical tree species Caryocar brasiliense, based on variability at microsatellite loci. Mol Ecol 10: 349-356.
17. Collevatti RG, Grattapaglia D, Hay JD (2003) Evidences for multiple maternal lineages of Caryocar brasiliense populations in the Brazilian Cerrado based on the analysis of chloroplast DNA sequences and microsatellite haplotype variation. Mol Ecol 12: 105-115.
18. Collevatti RG, Estolano R, Garcia SF, Hay JD (2010) Short-distance pollen dispersal and high self-pollination in a bat-pollinated Neotropical tree. Tree Genetics & Genomes 6: 555-564.
19. Colwell RK, Rangel TF (2009) Hutchinson's duality: the once and future niche. Proc Natl Acad Sci USA 106: 19651-19658.
20. Comes HP, Kadereit JW (1998) The effects of Quaternary climatic changes on plant distribution and evolution. Trends Plant Sci 3: 432-438.
21. Cornuet JM, Luikart G (1997) Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144: 2001-2014.
22. Davis MB, Shaw RG (2001) Range shifts and adaptive responses to Quaternary climate change. Science 292: 673-679.
23. DeMarco P, Diniz-Filho JAF, Bini LM (2008) Spatial analysis improves species distribution modeling during range expansion. Biol Lett 4: 577-580.
24. Diniz-Filho JAF, Bini LM (2008) Macroecology, global change and the shadow of forgotten ancestors. Global Ecol Biogeogr 17: 11-17.
25. Diniz-Filho JAF, Nabout JC, Bini LM, Soares TN, Telles MPC, DeMarco P, Collevatti RG (2009a) Niche modeling and landscape genetics of Caryocar brasiliense ("Pequi" tree: Caryocariaceae) in Brazilian Cerrado: an integrative approach for evaluating central-peripheral population patterns. Tree Gen Genom 5: 617-627.
26. Diniz-Filho JAF, Bini LM, Rangel TF, Loyola RD, Hof C, Nogués-Bravo D, Araújo MB (2009b) Partitioning and mapping uncertainties in ensembles of forecasts of species turnover under climate change. Ecography 32: 897-906.
27. Diniz-Filho JAF, Nabout JC, Bini LM, Loyola RD, Rangel TF, Nogues-Bravo D, Araújo MB (2010) Ensemble forecasting shifts in climatic suitable areas for Tropidacris cristata (Orthoptera: Acridoidea: Romaleidae). Insect Conservation and Diversity 3: 213-221.
28. Elith J, Graham CH (2009) Do they? How do they? Why do they differ? On finding reasons for differing performances of species distribution models. Ecography 32: 66-77.
29. Elith J, Graham CH, Anderson RP, Dudik M, Ferrier S, Guisan A, Hijmans RJ, Huettmann F, Leathwick JR, Lehmann A, Li J, Lohmann LG, Loiselle BA, Manion G, Moritz C, Nakamura M, Nakazawa Y, Overton JM, Peterson AT, Phillips SJ, Richardson K, Scachetti-Pereira R, Schapire RE, Soberon J, Williams S, Wisz MS, Zimmermann NE (2006) Novel methods improve prediction of species' distributions from occurrence data. Ecography 29: 129-151.
30. Ewers RM, Didham RK (2006) Confounding factors in the detection of species responses to habitat fragmentation. Biol Rev 81: 117-142.
31. Excoffier L, Ray N (2008) Surfing during population expansions promotes genetic revolutions and structuration. T Ecol Evol 23: 347-351.
32. Gienapp P, Teplitsky C, Alho JS, Mills JA, Merilä J (2008) Climate change and evolution: disentangling environmental and genetic responses. Mol Ecol 17: 167-178.
33. Gribel R, Hay JD (1993) Pollination ecology of Caryocar brasiliense (Caryocaraceae) in Central Brazil cerrado vegetation. J Trop Ecol 9: 199-211.
34. Hawkins BA, Diniz-Filho JAF, Bini LM, De Marco P, Blackburn TM (2007) Red herrings revisited: spatial autocorrelation and parameter estimation in geographical ecology. Ecography 30: 375-384.
35. Hewitt GM (1996) Some genetic consequences of ice ages, and their role in divergence and speciation. Biol J Linn Soc 58: 247-276.
36. Hewitt GM (2000) The genetic legacy of the Quaternary ice ages. Nature 405: 907-913.
37. Hoffmann AA, Willi Y (2008) Detecting genetic responses to environmental change. Nature 9: 421-432.
38. Jump AS, Peñuelas J (2005) Running to stand still: adaptation and the response of plants to rapid climate change. Ecol Lett 8: 1010-1020.
39. Jump AS, Hunt JM, Martínez-Izquierdo JA, Peñuelas J (2006) Natural selection and climate change: temperature-linked spatial and temporal trends in gene frequency in Fagus sylvatica. Mol Ecol 15: 3469-3480.
40. Jump AS, Mátyás C, Puñuelas J (2009) The altitude-for-latitude disparity in the range retractions of woody species. Trends Ecol Evol 24: 694-701.
41. Kerr JT, Kharouba HM, Currie DJ (2007) The macroecological contribution to global change solutions. Science 316: 1581-1584.
42. Lande R (1988) Genetics and demography in biological conservation. Science 241: 1455-1460.
43. Lenoir J, Gégout JC, Marquet PA, Ruffray P, Brisse H (2008) A significant upward shift in plant species optimum elevation during the 20th century. Science 320: 1768-1771.
44. Lobo JM, Jimenez-Valverde A, Real R (2008) AUC: a misleading measure of the performance of predictive distribution models. Global Ecol Biogeogr 17: 145-151.
45. Losos JB (2008) Phylogenetic niche conservatism, phylogenetic signal and the relationship between phylogenetic relatedness and ecological similarity among species. Ecology Lett 11: 995-1007.
46. Luikart G, Allendorf FW, Cornuet JM, Sherwin WB (1998) Distortion of allele frequency distributions provides a test for recent population bottlenecks. J Hered 89: 238-247.
47. Maruyama T, Fuerst PA (1985) Population bottlenecks and non equilibrium models in population genetics. II. Number of alleles in a small population that was formed by a recent bottleneck. Genetics 111: 675-689.
48. Mátyás C (2010) Forecasts needed for retreating forests. Nature 464: 1271.
49. McInerny GJ, Turner JRG, Wong HY, Travis JMJ, Benton TG (2009) How range shifts induced by climate change affect neutral evolution. Proc Roy Soc Lond B 276: 1527-1534.
50. Nee S, May RM (1997) Extinction and the loss of evolutionary history. Science 278: 692-694.
51. Nei M (1978) Estimation of average heterozygosity and genetic distance from a small number of individual. Genetics 89: 583-590.
52. Nei M, Li WH (1976) The transient distribution of allele frequencies under mutation pressure. Genet Res 28: 205-214.
53. Parmesan C (2006) Ecological and evolutionary responses to recent climate change. Annu Rev Ecol Evol Syst 37: 637-669.
54. Parmesan C, Yohe G (2003) A globally coherent fingerprint of climate change impacts across natural systems. Nature 421: 37-42.
55. Pearman PB, Guisan A, Broennimann O (2008) Niche dynamics in space and time. Trends Ecol Evol 23: 149-158.
56. Pearman PB, D'Amen M, Graham CH, Thuiller W, Zimmermann NE (2010) Within-taxon niche structure: niche conservatism, divergence and predicted effects of a dominant species on the distribution of tundra plants. Ecography 33: 990-1003.
57. Peterson AT, Soberon J, Sanchez-Cordero V (1999) Conservatism of ecological niches in evolutionary time. Science 285: 1265-1267.
58. Peterson AT, Papes M, Eaton M (2007) Transferability and model evaluation in ecological niche modeling: a comparison of GARP and MAXENT. Ecography 30: 550-560.
59. Peterson AT, Papes M, Soberón J (2008) Rethinking receiver operating characteristic analysis: applications in ecological niche modeling. Ecol Model 213: 63-72.
60. Phillips SJ, Dudík M (2008) Modeling of species distributions with Maxent: new extensions and a comprehensive evaluation. Ecography 31: 161-175.
61. Phillips SJ, Anderson RP, Schapire RE (2006) Maximum entropy modeling of species geographic distributions. Ecol Model 190: 231-259.
62. Purvis A, Agapow PM, Gittleman JL, Mace GM (2000) Nonrandom extinction and the loss of evolutionary history. Science 288: 328-330.
63. Reed DH, Frankham F (2003) Correlation between fitness and genetic diversity. Conserv Biol 17: 230-237.
64. Reusch TBH, Wood TE (2007) Molecular ecology of global change. Mol Ecol 16: 3973-3992.
65. Ritland K (1996) A marker-based method for inferences about quantitative inheritance in natural populations. Evolution 50: 1062-1073.
66. Salazar LF, Nobre CA, Oyama MD (2007) Climate change consequences on the distribution in tropical South America. Geophys Res Lett 34: 1-6.
67. Salgado-Labouriau ML, Barberi M, Ferraz-Vicentini KR, Parizzi MG (1998) A dry climatic event during the Late Quaternary of tropical Brazil. Rev Paleobot Palyno 99: 115-129.
68. Savolainen O, Bokma F, García-Gil MR, Komulainen P, Repo T (2004) Genetic variation in cessation of growth and frost hardiness and consequences for adaptation of Pinus sylvestris to climatic changes. Forest Ecol Manag 197: 79-89.
69. Sechrest W, Brooks TM, Fonseca GAB, Konstant WR, Mittermeier RA, Purvis A, Rylands AB, Gittleman JL (2003) Hotspots and the conservation of evolutionary history. Proceedings of the National Academy of Sciences 99: 2067-2071.
70. Soberon J (2007) Grinnellian and Eltonian niches and geographic distributions of species. Ecol Lett 10: 1115-1123.
71. Umina PA, Weeks AR, Kearney MR, McKechnie SW, Hoffmann AA (2005) A rapid shift in a classic clinal pattern in Drosophila reflecting climate change. Science 308: 691-693.
72. van Dijk H, Hautekeete N (2007) Long day plants and the response to global warming: rapid evolutionary change in day length sensitivity is possible in wild beet. J Evolution Biol 20: 349-357.
73. 2 a selective agent on model C3 annuals? Oecologia 123: 330.
74. 2. Glob Change Biol 10: 1389-1401.
75. Wiens JJ, Graham CH (2005) Niche conservatism: integrating evolution, ecology, and conservation biology. Ann Rev Ecol Evol Syst 36: 519-539.
76. Wiens JJ, Ackerly DD, Allen AP, Anacker BL, Buckley LB, Cornell HV, Damschen EI, Davies R, Grytnes TJJA, Harrison SP, Hawkins BA, Holt R, McCain CM, Stephens PR (2010) Niche conservatism as an emerging principle in ecology and conservation biology. Ecol Lett 13: 1310-1324.
77. Wright S (1951) The genetic structure of populations. Ann Eugen 15: 323-354.
78. Zimmermann NE, Edwards TC Jr, Graham CH, Pearman PB, Svenning JC (2010) New trends in species distribution modeling. Ecography 33: 985-989.