Niche modelling and landscape genetics of Caryocar brasiliense ("Pequi" tree: Caryocaraceae) in Brazilian Cerrado: An integrative approach for evaluating central-peripheral population patterns

Tree Genetics and Genomes

Volumn 5, Issue 4, 2009, Pages 617-627

  Diniz Filho, José Alexandre F ^a   Nabout, João Carlos ^a   Bini, Luis Mauricio ^a   Soares, Thannya N ^a   de Campus Telles, Mariana Pires ^a   de Marco Jr , Paulo ^a   Collevatti, Rosane G ^a  

^a FEDERAL UNIVERSITY OF GOIÁS   (Brazil)

Author keywords

Genetic diversity; Human impacts; Inbreeding; Landscape genetics; Niche modelling; Population structure

Indexed keywords

CARYOCAR BRASILIENSE; CARYOCARACEAE;

EID: 70349504413     PISSN: 16142942     EISSN: 16142950     Source Type: Journal    
DOI: 10.1007/s11295-009-0214-0     Document Type: Article

References (65)

1. Alleaume-Benharira M, Pen IR, Ronce O (2006) Geographical patterns of adaptation within a species' range: interactions between drift and gene flow. J Evol Biol 19:203-215
2. Anderson RP, Martinez-Meyer E (2004) Modeling species' geographic distributions for preliminary conservation assessments: an implementation with the spiny pocket mice (Heteromys) of Ecuador. Biol Conserv 116:167-179
3. Araújo MB, Pearson RG (2005) Equilibrium of species' distributions with climate. Ecography 28:693-695
4. Araújo MB, Guisan A (2006) Five (or so) challenges for species distribution modelling. J Biogeogr 33:1677-1688
5. Araújo MB, New M (2007) Ensemble forecasting of species distributions. Trends Ecol Evol 22:42-47
6. Avise JC (2004) Molecular markers, natural history and evolution. Sinauer Associates, Sunderland
7. Brown JH (1984) On the relationship between abundance and distribution of species. Am Nat 124:255-279
8. Caetano S, Prado D, Pennington RR, Oliveira-Filho A, Spichiger R, Naciri Y (2008) The history of seasonally dry tropical forests in eastern South America: inferences from the genetic structure of the tree Astronium urundeuva (Anacardiaceae). Mol Ecol 17:3147-3159
9. Collevatti RG, Brondani RPV, Grattapaglia D (1999) Development and characterization of microsatellite markers for genetic analysis of a Brazilian endangered species Caryocar brasiliense. Heredity 83:748-756
10. Collevatti RG, Grattapaglia D, Hay JD (2001) Population genetic structure of the endangered tropical tree species Caryocar brasiliense, based on variability at microsatellite loci. Mol Ecol 10:349-356
11. Collevatti RG, Grattapaglia D, Hay JD (2003) Evidences for multiple maternal lineage origin of Caryocar brasiliense populations in Brazilian Cerrado based on the analysis chloroplast DNA sequences and microsatellites haplotypes. Mol Ecol 12:105-115
12. Diniz-Filho JAF, Telles MPC (2002) Spatial autocorrelation analysis and the identification of operational units for conservation in continuous populations. Conserv Biol 16:924-935
13. Diniz-Filho JAF, Sant'ana CER, Bini LM (1998) An eigenvector method for estimating phylogenetic inertia. Evolution 52:1247-1262
14. Diniz-Filho JAF, Fuchs S, Arias MC (1999) Phylogeographic autocorrelation of phenotypic evolution in honey bees (Apis mellifera). Heredity 83:671-680
15. Diniz-Filho JAF, Bini LM, Hawkins BA (2003) Spatial autocorrelation and red herrings in geographical ecology. Global Ecol Biogeogr 12:53-64
16. Diniz-Filho JAF, Bini LM, Pinto MP, Rangel TFLVB, Carvalho P, Bastos RP (2006) Anuran species richness, complementarity and conservation conflicts in Brazilian Cerrado. Acta Oecol 29:9-15
17. Diniz-Filho JAF, Telles MPC, Bonatto SL et al (2008a) Mapping the evolutionary twilight zone: molecular markers, populations and geography. J Biogeogr 35:753-763
18. Diniz-Filho JAF, Rangel TFLVB, Bini LM (2008b) Model selection and information theory in geographical ecology. Global Ecol Biogeogr 17:479-488
19. Eckert CG, Samis KE, Lougheed SC (2008) Genetic variation across species' geographical ranges: the central-marginal hypothesis and beyond. Mol Ecol 17:1170-1188
20. Elith J, Graham CH, Anderson RP et al (2006) Novel methods improve prediction of species' distributions from occurrence data. Ecography 29:129-151
21. Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:479-491
22. Farber O, Kadmon R (2003) Assessment of alternative approaches for bioclimatic modeling with special emphasis on the Mahalanobis distance. Ecol Model 160:115-130
23. Gaston KJ (2003) The structure and dynamics of geographic ranges. Oxford University Press, Oxford
24. Gaston KJ, Blackburn TM (2000) Pattern and process in macroecology. Blackwell, London
25. Ginzburg LR, Golenberg EM (1985) Lectures in theoretical population biology. Prentice-Hall, Englewood Cliffs
26. Hawkins BA, Diniz-Filho JAF, Bini LM, De Marco P, Blackburn TM (2007) Red herrings revisited: spatial autocorrelation and parameter estimation in geographical ecology. Ecography 30:375-384
27. Hijmans RJ, Guarino L, Bussink C, Barrantes I, Rojas E (2005) DIVA-GIS, Version 5.2. http://www.diva-gis.org (last accessed 14 July 2008)
28. Hoffman AA, Blows MW (1994) Species borders: ecological and evolutionary perspectives. Trends Ecol Evol 9:223-227
29. Holderegger R, Wagner HH (2006) A brief guide to landscape genetics. Landsc Ecol 21:793-796
30. Holt RD, Keit TH (2005) Species' borders: a unifying theme in ecology. Oikos 18:3-6
31. Howes BJ, Lougheed SC (2008) Genetic diversity across the range of a temperate lizard. J Biogeogr 35:1269-1278
32. Jakob SS, Ihlow A, Blattner FR (2007) Combined ecological niche modelling and molecular phylogeography revealed the evolutionary history of Hordeum marinum (Poaceae)-niche differentiation, loss of genetic diversity and speciation in Mediterranean Quaternary refugia. Mol Ecol 16:1713-1727
33. Kidd DM, Ritchie MG (2006) Phylogeographic information systems: putting the geography into phylogeography. J Biogeogr 33:1851-1865
34. Kirkpatrick M, Barton NH (1997) Evolution of a species' range. Am Nat 150:1-23
35. Klink CA, Moreira AG (2002) Past and current human occupation, and land use. In: Oliveira PS, Marquis RJ (eds) The Cerrados of Brazil. Columbia University Press, New York, pp 69-88
36. Klink CA, Machado RB (2005) Conservation of the Brazilian Cerrado. Conserv Biol 10:710-713
37. Knowles LL, Carstens BC, Keat ML (2007) Coupling genetic and ecological-niche models to examine how past population distributions contribute to divergence. Curr Biol 17:940-946
38. Ledru MP (2002) Late Quaternary history and evolution of the cerrados as revealed by palynological records. In: Oliveira PS, Marquis RJ (eds) The Cerrados of Brazil. Columbia University Press, New York, pp 35-50
39. Legendre P, Legendre L (1998) Numerical ecology. Elsevier, Amsterdam
40. Lenormand T (2002) Gene flow and the limits to natural selection. Trends Ecol Evol 17:183-189
41. Lobo JM, Jimenez-Valverde A, Real R (2008) AUC: a misleading measure of the performance of predictive distribution models. Global Ecol Biogeogr 17:145-151
42. Lönn M, Prentice HC (2002) Gene diversity and demographic turnover in central and peripheral populations of the perennial herb, Gypsophila fastigiata. Oikos 99:489-498
43. Luoto M, Poyry J, Heikkinen RK, Saarinen K (2005) Uncertainty of bioclimate envelope models based on the geographical distribution of species. Global Ecol Biogeogr 14:575-584
44. Manel S, Schwartz MK, Luikart G, Taberlet P (2003) Landscape genetics: combining landscape ecology and population genetics. Trends Ecol Evol 18:189-197
45. Manly BFJ (1985) The statistics of natural selection. Chapman & Hall, London
46. Maurer BA (1994) Geographical population analysis: tools for the analysis of biodiversity. Blackwell Scientific, Oxford
47. Oliveira-Filho AT, Ratter JA (2002) Vegetation physiognomies and woddy flora of the cerrado Biome. In: Oliveira PS, Marquis RJ (eds) The Cerrados of Brazil. Columbia University Press, New York, pp 91-120
48. Peterson AT (2001) Predicting species' geographical distribution based on ecological niche modelling. Condor 103:599-605
49. Phillips S, Dudík M (2008) Modeling of species distributions with Maxent: new extensions and a comprehensive evaluation. Ecography 190:231-259
50. Phillips SJ, Anderson RP, Schapire RE (2006) Maximum entropy modeling of species geographic distributions. Ecol Model. doi:10.1016/j.ecolmodel.2005.03.026
51. Rangel TFLVB, Diniz-Filho JAF, Bini LM (2006) Towards an integrated computational tool for spatial analysis in macroecology and biogeography. Global Ecol Biogeogr 15:321-327
52. Ratter JA, Bridgewater S, Ribeiro JF (2003) Analysis of the floristic compositionof the Brasilian Cerrado vegetation. III: comparison of the woody vegetation of 376 areas. Edinburgh J Bot 60:57-109
53. Sagarin RD, Gaines SD (2002) The 'abundant centre' distributions: to what extent is it a biogeographical rule? Ecol Lett 5:137-147
54. Sagarin RD, Gaines SD, Gaylord B (2006) Moving beyond assumptions to understand abundance distributions across the range of species. Trends Ecol Evol 21:524-530
55. Sanderson EW, Jaiteh M, Levy MA, Redford KH, Wannebo AV, Woolmer G (2002) The human footprint and the last of the wild. Bioscience 52:891-904
56. Sano EE, Rosa R, Brito JLS, Ferreira LG (2008) Mapeamento semidetalhado do uso da terra do Bioma Cerrado. Pesq Agropec Bras 43:153-156
57. Segurado P, Araújo MB (2004) A evaluation of methods for modelling species distributions. J Biogeogr 31:1555-1568
58. Soares TN, Chaves LJ, Telles MPC, Diniz-Filho JAF, Resende LV (2008) Landscape conservation genetics of Dipteryx alata ("baru" tree: Fabaceae) from Cerrado region of central Brazil. Genetica 132:9-19
59. Sokal RR, Rohlf FJ (1995) Biometry, 3rd edn. Freeman, San Francisco
60. Soulé M (1973) The epistasis cycle: a theory of marginal populations. Annu Rev Ecol Syst 4:165-187
61. Stockwell DRB, Peterson AT (2002) Effects of sample size on accuracy of species distribution models.Ecol Model 148:1-13
62. Telles MPC, Diniz-Filho JAF, Bastos RP, Soares TN, Guimarães LD, Lima LP (2007) Landscape genetics of Physalaemus cuvieri in Brazilian Cerrado: correspondence between population structure and patterns of human occupation and habitat loss. Biol Conserv 139:37-46
63. Toledo MB, Bush MA (2007) A mid-holocene environmental change in Amazonian savannas. J Biogeogr 34:1313-1326
64. Tsoar A, Allouche O, Steinitz O, Rotem D, Kadmon R (2007) A comparative evaluation of presence-only methods for modelling species distributions. Divers Distrib 13:397-405
65. Walter BMT, Guarino ESG (2006) Comparação do método de parcelas com o "levantamento rápido" para amostragem da vegetação arbórea do Cerrado sentido restrito. Acta Bot Braz 20:285-297